3AL0A

Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state.
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
472
structure length
472
Chain Sequence
LDFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKGKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNSPYNENGMFPLPEVKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase/rna
molecule keywords Glutamyl-tRNA(Gln) amidotransferase subunit A
publication title Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions.
pubmed doi rcsb
source organism Thermotoga maritima
total genus 115
structure length 472
sequence length 472
ec nomenclature ec 6.3.5.7: Glutaminyl-tRNA synthase (glutamine-hydrolyzing).
pdb deposition date 2010-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 3al0A00
3QKVA 4HBPA 1OCMA 1O9OA 2DF4A 1M22A 2DQNA 3K83A 3A2PA 3H0RA 1OBKA 3K84A 3A2QA 2WJ2A 3LJ6A 4J5PA 4WJ3A 1O9QA 3H0LA 1OBJA 2GI3A 2VYAA 3LJ7A 3QJ9A 1O9NA 2G5HA 3A1KA 3A1IA 4ISTA 4DO3A 4CP8A 5AC3A 2DC0A 5EWQA 1O9PA 1OBIA 4YJIA 3IP4A 1MT5A 4GYRA 3PR0A 3KFUE 3AL0A 4YJ6A 3OJ8A 3K7FA 4GYSA 2F2AA 4N0HA 3PPMA 3QK5A 1OCKA 3QJ8A 1OBLA 2WAPA 4N0IA 3H0MA 4ISSA 1OCLA 1OCHA 2WJ1A 2G5IA 1M21A
chains in the Genus database with same CATH superfamily
3QKVA 4HBPA 1OCMA 1O9OA 2DF4A 1M22A 2DQNA 3K83A 3A2PA 3H0RA 1OBKA 3K84A 3A2QA 2WJ2A 3LJ6A 4J5PA 4WJ3A 1O9QA 3H0LA 1OBJA 2GI3A 2VYAA 3LJ7A 3QJ9A 1O9NA 2G5HA 3A1KA 3A1IA 4ISTA 4DO3A 4CP8A 5AC3A 2DC0A 5EWQA 1O9PA 1OBIA 4YJIA 3IP4A 1MT5A 4GYRA 3PR0A 3KFUE 3AL0A 4YJ6A 3OJ8A 3K7FA 4GYSA 2F2AA 4N0HA 3PPMA 3QK5A 1OCKA 3QJ8A 1OBLA 2WAPA 4N0IA 3H0MA 4ISSA 1OCLA 1OCHA 2WJ1A 2G5IA 1M21A
chains in the Genus database with same CATH topology
3QKVA 4HBPA 1OCMA 1O9OA 2DF4A 1M22A 2DQNA 3K83A 3A2PA 3H0RA 1OBKA 3K84A 3A2QA 2WJ2A 3LJ6A 4J5PA 4WJ3A 1O9QA 3H0LA 1OBJA 2GI3A 2VYAA 3LJ7A 3QJ9A 1O9NA 2G5HA 3A1KA 3A1IA 4ISTA 4DO3A 4CP8A 5AC3A 2DC0A 5EWQA 1O9PA 1OBIA 4YJIA 3IP4A 1MT5A 4GYRA 3PR0A 3KFUE 3AL0A 4YJ6A 3OJ8A 3K7FA 4GYSA 2F2AA 4N0HA 3PPMA 3QK5A 1OCKA 3QJ8A 1OBLA 2WAPA 4N0IA 3H0MA 4ISSA 1OCLA 1OCHA 2WJ1A 2G5IA 1M21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QKV A;  4HBP A;  1OCM A;  1O9O A;  2DF4 A;  1M22 A;  2DQN A;  3K83 A;  3A2P A;  3H0R A;  1OBK A;  3K84 A;  3A2Q A;  2WJ2 A;  3LJ6 A;  4J5P A;  4WJ3 A;  1O9Q A;  3H0L A;  1OBJ A;  2GI3 A;  2VYA A;  3LJ7 A;  3QJ9 A;  1O9N A;  2G5H A;  3A1K A;  3A1I A;  4IST A;  4DO3 A;  4CP8 A;  5AC3 A;  2DC0 A;  5EWQ A;  1O9P A;  1OBI A;  4YJI A;  3IP4 A;  1MT5 A;  4GYR A;  3PR0 A;  3KFU E;  3AL0 A;  4YJ6 A;  3OJ8 A;  3K7F A;  4GYS A;  2F2A A;  4N0H A;  3PPM A;  3QK5 A;  1OCK A;  3QJ8 A;  1OBL A;  2WAP A;  4N0I A;  3H0M A;  4ISS A;  1OCL A;  1OCH A;  2WJ1 A;  2G5I A;  1M21 A; 
#chains in the Genus database with same CATH topology
 3QKV A;  4HBP A;  1OCM A;  1O9O A;  2DF4 A;  1M22 A;  2DQN A;  3K83 A;  3A2P A;  3H0R A;  1OBK A;  3K84 A;  3A2Q A;  2WJ2 A;  3LJ6 A;  4J5P A;  4WJ3 A;  1O9Q A;  3H0L A;  1OBJ A;  2GI3 A;  2VYA A;  3LJ7 A;  3QJ9 A;  1O9N A;  2G5H A;  3A1K A;  3A1I A;  4IST A;  4DO3 A;  4CP8 A;  5AC3 A;  2DC0 A;  5EWQ A;  1O9P A;  1OBI A;  4YJI A;  3IP4 A;  1MT5 A;  4GYR A;  3PR0 A;  3KFU E;  3AL0 A;  4YJ6 A;  3OJ8 A;  3K7F A;  4GYS A;  2F2A A;  4N0H A;  3PPM A;  3QK5 A;  1OCK A;  3QJ8 A;  1OBL A;  2WAP A;  4N0I A;  3H0M A;  4ISS A;  1OCL A;  1OCH A;  2WJ1 A;  2G5I A;  1M21 A; 
#chains in the Genus database with same CATH homology
 3QKV A;  4HBP A;  1OCM A;  1O9O A;  2DF4 A;  1M22 A;  2DQN A;  3K83 A;  3A2P A;  3H0R A;  1OBK A;  3K84 A;  3A2Q A;  2WJ2 A;  3LJ6 A;  4J5P A;  4WJ3 A;  1O9Q A;  3H0L A;  1OBJ A;  2GI3 A;  2VYA A;  3LJ7 A;  3QJ9 A;  1O9N A;  2G5H A;  3A1K A;  3A1I A;  4IST A;  4DO3 A;  4CP8 A;  5AC3 A;  2DC0 A;  5EWQ A;  1O9P A;  1OBI A;  4YJI A;  3IP4 A;  1MT5 A;  4GYR A;  3PR0 A;  3KFU E;  3AL0 A;  4YJ6 A;  3OJ8 A;  3K7F A;  4GYS A;  2F2A A;  4N0H A;  3PPM A;  3QK5 A;  1OCK A;  3QJ8 A;  1OBL A;  2WAP A;  4N0I A;  3H0M A;  4ISS A;  1OCL A;  1OCH A;  2WJ1 A;  2G5I A;  1M21 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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