3BK5A

Crystal structure of putative outer membrane lipoprotein-sorting protein domain from vibrio parahaemolyticus
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
236
structure length
235
Chain Sequence
NAEKGLEIAQERKARDEGWGDSIATMEMILKNAQESSTRLMRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGADDQWLYLPALKRVKRISSRNKSGPFMGSEFAYEDLSSFEIEKYRFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLDKAHYRPLKVEFYDRKGALLKTLTFANYKQYLDKYWRAHTMAMTNHQTGKSTELNTSDLRFQTGLEENDFNKNVLKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords putative outer membrane lipoprotein-sorting protein
publication title The crystal structure of putative outer membrane lipoprotein-sorting protein domain from Vibrio parahaemolyticus.
rcsb
source organism Vibrio parahaemolyticus rimd 2210633
total genus 57
structure length 235
sequence length 236
ec nomenclature
pdb deposition date 2007-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17131 LolA_like Outer membrane lipoprotein-sorting protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.50.20.10 Mainly Beta Clam outer membrane lipoprotein receptor (LolB), chain A Lipoprotein localisation LolA/LolB/LppX 3bk5A00
1UA8A 2V42A 2ZPCA 3WJTA 1IWNA 4MXTA 3BUUA 4Z48A 3BK5A 3KSNA 3WJVA 1IWLA 1IWMA 2P4BA 2YZYA 2V43A 3WJUA 2ZPDA 2W7QA 4KI3A 3M4WA
chains in the Genus database with same CATH superfamily
3BMZA 1UA8A 3MH8A 2V42A 2ZPCA 3MH9A 3WJTA 4EGDA 2BYOA 1IWNA 4MXTA 3BUUA 4EG9A 2ZF3A 4Z48A 3BK5A 3KSNA 3WJVA 1IWLA 2ZF4A 1IWMA 2P4BA 2YZYA 4ZRAA 3MHAA 2V43A 3WJUA 4QA8A 2ZPDA 2W7QA 4KI3A 3M4WA
chains in the Genus database with same CATH topology
1UA8A 2V42A 2ZPCA 3WJTA 1IWNA 4MXTA 3BUUA 4Z48A 3BK5A 3KSNA 3WJVA 1IWLA 1IWMA 2P4BA 2YZYA 2V43A 3WJUA 2ZPDA 2W7QA 4KI3A 3M4WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UA8 A;  2V42 A;  2ZPC A;  3WJT A;  1IWN A;  4MXT A;  3BUU A;  4Z48 A;  3BK5 A;  3KSN A;  3WJV A;  1IWL A;  1IWM A;  2P4B A;  2YZY A;  2V43 A;  3WJU A;  2ZPD A;  2W7Q A;  4KI3 A;  3M4W A; 
#chains in the Genus database with same CATH topology
 3BMZ A;  1UA8 A;  3MH8 A;  2V42 A;  2ZPC A;  3MH9 A;  3WJT A;  4EGD A;  2BYO A;  1IWN A;  4MXT A;  3BUU A;  4EG9 A;  2ZF3 A;  4Z48 A;  3BK5 A;  3KSN A;  3WJV A;  1IWL A;  2ZF4 A;  1IWM A;  2P4B A;  2YZY A;  4ZRA A;  3MHA A;  2V43 A;  3WJU A;  4QA8 A;  2ZPD A;  2W7Q A;  4KI3 A;  3M4W A; 
#chains in the Genus database with same CATH homology
 1UA8 A;  2V42 A;  2ZPC A;  3WJT A;  1IWN A;  4MXT A;  3BUU A;  4Z48 A;  3BK5 A;  3KSN A;  3WJV A;  1IWL A;  1IWM A;  2P4B A;  2YZY A;  2V43 A;  3WJU A;  2ZPD A;  2W7Q A;  4KI3 A;  3M4W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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