3BMZA

Violacein biosynthetic enzyme vioe
Total Genus 47
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
185
structure length
185
Chain Sequence
EPPLLPARWSSAYVSYWSPMLPDDQLTSGYCWFDYERDICRIDGLFNPWSERDTGYRLWMSEVGNAASGRTWKQKVAYGRERTALGEQLCERPLDDETGPFAELFLPRDVLRRLGARHIGRRVVLGREADGWRYQRPGKGPSTLYLDAASGTPLRMVTGDEASRASLRDFPNVSEAEIPDAVFAA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Biosynthetic protein
molecule keywords Putative uncharacterized protein
publication title The Violacein Biosynthetic Enzyme VioE Shares a Fold with Lipoprotein Transporter Proteins
pubmed doi rcsb
source organism Chromobacterium violaceum
total genus 47
structure length 185
sequence length 185
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18234 VioE Violacein biosynthetic enzyme VioE
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.50.20.30 Mainly Beta Clam outer membrane lipoprotein receptor (LolB), chain A outer membrane lipoprotein receptor (LolB), chain A 3bmzA00
2ZF3A 2ZF4A 3BMZA
chains in the Genus database with same CATH superfamily
2ZPCA 2V43A 4ZRAA 2V42A 3WJTA 4EG9A 4MXTA 3WJUA 3BK5A 3M4WA 1IWNA 1IWMA 3MHAA 2YZYA 2ZF4A 4EGDA 1UA8A 3BMZA 2P4BA 4Z48A 2W7QA 4KI3A 2ZF3A 2BYOA 3MH8A 3WJVA 2ZPDA 3KSNA 3BUUA 4QA8A 3MH9A 1IWLA
chains in the Genus database with same CATH topology
3MHAA 4ZRAA 2ZF4A 4QA8A 4EG9A 4EGDA 2ZF3A 3BMZA 3MH9A 2BYOA 3MH8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZF3 A;  2ZF4 A;  3BMZ A; 
#chains in the Genus database with same CATH topology
 2ZPC A;  2V43 A;  4ZRA A;  2V42 A;  3WJT A;  4EG9 A;  4MXT A;  3WJU A;  3BK5 A;  3M4W A;  1IWN A;  1IWM A;  3MHA A;  2YZY A;  2ZF4 A;  4EGD A;  1UA8 A;  3BMZ A;  2P4B A;  4Z48 A;  2W7Q A;  4KI3 A;  2ZF3 A;  2BYO A;  3MH8 A;  3WJV A;  2ZPD A;  3KSN A;  3BUU A;  4QA8 A;  3MH9 A;  1IWL A; 
#chains in the Genus database with same CATH homology
 3MHA A;  4ZRA A;  2ZF4 A;  4QA8 A;  4EG9 A;  4EGD A;  2ZF3 A;  3BMZ A;  3MH9 A;  2BYO A;  3MH8 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...