3BOGC

Snow flea antifreeze protein quasi-racemate
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
77
structure length
37
Chain Sequence
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords 6.5 kDa glycine-rich antifreeze protein
publication title X-ray structure of snow flea antifreeze protein determined by racemic crystallization of synthetic protein enantiomers
pubmed doi rcsb
total genus 2
structure length 37
sequence length 77
chains with identical sequence D
ec nomenclature
pdb deposition date 2007-12-17
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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