3BPBA

Crystal structure of the dimethylarginine dimethylaminohydrolase h162g adduct with s-methyl-l-thiocitrulline
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
254
structure length
254
Chain Sequence
MFKHIIARTPARSLVDGLTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRCAIITRPGAESRRGETEIIEETVQRFYPGKVERIEAPGTVEAGDIMMVGDHFYIGESARTNAEGARQMIAILEKHGLSGSVVRLEKVLGLKTGLAYLEHNNLLAAGEFVSKPEFQDFNIIEIPEEESYAANCIWVNERVIMPAGYPRTREKIARLGYRVIEVDTSEYRKIDGGVSCMSLRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords dimethylarginine dimethylaminohydrolase
publication title Promiscuous partitioning of a covalent intermediate common in the pentein superfamily.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 83
structure length 254
sequence length 254
chains with identical sequence B
ec nomenclature ec 3.5.3.18: Dimethylargininase.
pdb deposition date 2007-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02274 Amidinotransf Amidinotransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 3bpbA00
4YTGA 2JDWA 3H7CX 3H7KA 4E4JA 1G61A 2CI5A 4N2MA 1WD8A 3I4AA 4N2FA 1RXXA 2CI1A 3HVMA 2DEXX 2C6ZA 3APMA 3P8PA 2CI4A 1S9RA 2JERA 2CI7A 1WDAA 5AK8A 2DEWX 5AK7A 4BOFA 2CMUA 4N2AA 3P8EA 1XKNA 4N22A 4N25A 1JDWA 1WD9A 1JDXA 2JAIA 2EWOA 3B1UA 1G62A 1VKPA 3BPBA 1BWDA 4N2KA 4YTBA 2DEYX 4N2DA 4N2BA 6JDWA 4N2LA 5M3QA 3APNA 5AN9I 4N28A 4N2HA 2AAFA 8JDWA 2ACIA 4YT9A 9JDWA 4N2IA 4N26A 2JAJA 3JDWA 4N24A 4DKTA 4X8CA 1H70A 5JDWA 2JDXA 2DW5A 1LXYA 2Q3UA 4N2NA 4N2GA 4X8GA 2CI3A 4JDWA 2ABRA 5HP5A 2A9GA 3I2EA 4N20A 7JDWA 1ZBRA 2CI6A 3B1TA 3RHYA 4N2EA 4N2CA
chains in the Genus database with same CATH superfamily
4YTGA 2JDWA 3H7CX 3H7KA 1YNFA 4E4JA 1G61A 2CI5A 4N2MA 1WD8A 3I4AA 4N2FA 1RXXA 2CI1A 3HVMA 2DEXX 2C6ZA 3APMA 3P8PA 2CI4A 1S9RA 2JERA 2CI7A 1WDAA 1YNHA 5AK8A 2DEWX 5AK7A 4BOFA 2CMUA 4N2AA 3P8EA 1XKNA 4N22A 4N25A 1JDWA 1WD9A 1JDXA 2JAIA 2EWOA 3B1UA 1G62A 1VKPA 3BPBA 1BWDA 4N2KA 4YTBA 2DEYX 4N2DA 4N2BA 6JDWA 4N2LA 5M3QA 3APNA 5AN9I 4N28A 4N2HA 2AAFA 8JDWA 2ACIA 4YT9A 9JDWA 4N2IA 4N26A 2JAJA 3JDWA 4N24A 4DKTA 4X8CA 1H70A 5JDWA 2JDXA 2DW5A 1LXYA 2Q3UA 4N2NA 4N2GA 4X8GA 2CI3A 4JDWA 2ABRA 5HP5A 2A9GA 3I2EA 4N20A 1YNIA 7JDWA 1ZBRA 2CI6A 3B1TA 3RHYA 4N2EA 4N2CA
chains in the Genus database with same CATH topology
4YTGA 2JDWA 3H7CX 3H7KA 4E4JA 1G61A 2CI5A 4N2MA 1WD8A 3I4AA 4N2FA 1RXXA 2CI1A 3HVMA 2DEXX 2C6ZA 3APMA 3P8PA 2CI4A 1S9RA 2JERA 2CI7A 1WDAA 5AK8A 2DEWX 5AK7A 4BOFA 2CMUA 4N2AA 3P8EA 1XKNA 4N22A 4N25A 1JDWA 1WD9A 1JDXA 2JAIA 2EWOA 3B1UA 1G62A 1VKPA 3BPBA 1BWDA 4N2KA 4YTBA 2DEYX 4N2DA 4N2BA 6JDWA 4N2LA 5M3QA 3APNA 5AN9I 4N28A 4N2HA 2AAFA 8JDWA 2ACIA 4YT9A 9JDWA 4N2IA 4N26A 2JAJA 3JDWA 4N24A 4DKTA 4X8CA 1H70A 5JDWA 2JDXA 2DW5A 1LXYA 2Q3UA 4N2NA 4N2GA 4X8GA 2CI3A 4JDWA 2ABRA 5HP5A 2A9GA 3I2EA 4N20A 7JDWA 1ZBRA 2CI6A 3B1TA 3RHYA 4N2EA 4N2CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YTG A;  2JDW A;  3H7C X;  3H7K A;  4E4J A;  1G61 A;  2CI5 A;  4N2M A;  1WD8 A;  3I4A A;  4N2F A;  1RXX A;  2CI1 A;  3HVM A;  2DEX X;  2C6Z A;  3APM A;  3P8P A;  2CI4 A;  1S9R A;  2JER A;  2CI7 A;  1WDA A;  5AK8 A;  2DEW X;  5AK7 A;  4BOF A;  2CMU A;  4N2A A;  3P8E A;  1XKN A;  4N22 A;  4N25 A;  1JDW A;  1WD9 A;  1JDX A;  2JAI A;  2EWO A;  3B1U A;  1G62 A;  1VKP A;  3BPB A;  1BWD A;  4N2K A;  4YTB A;  2DEY X;  4N2D A;  4N2B A;  6JDW A;  4N2L A;  5M3Q A;  3APN A;  5AN9 I;  4N28 A;  4N2H A;  2AAF A;  8JDW A;  2ACI A;  4YT9 A;  9JDW A;  4N2I A;  4N26 A;  2JAJ A;  3JDW A;  4N24 A;  4DKT A;  4X8C A;  1H70 A;  5JDW A;  2JDX A;  2DW5 A;  1LXY A;  2Q3U A;  4N2N A;  4N2G A;  4X8G A;  2CI3 A;  4JDW A;  2ABR A;  5HP5 A;  2A9G A;  3I2E A;  4N20 A;  7JDW A;  1ZBR A;  2CI6 A;  3B1T A;  3RHY A;  4N2E A;  4N2C A; 
#chains in the Genus database with same CATH topology
 4YTG A;  2JDW A;  3H7C X;  3H7K A;  1YNF A;  4E4J A;  1G61 A;  2CI5 A;  4N2M A;  1WD8 A;  3I4A A;  4N2F A;  1RXX A;  2CI1 A;  3HVM A;  2DEX X;  2C6Z A;  3APM A;  3P8P A;  2CI4 A;  1S9R A;  2JER A;  2CI7 A;  1WDA A;  1YNH A;  5AK8 A;  2DEW X;  5AK7 A;  4BOF A;  2CMU A;  4N2A A;  3P8E A;  1XKN A;  4N22 A;  4N25 A;  1JDW A;  1WD9 A;  1JDX A;  2JAI A;  2EWO A;  3B1U A;  1G62 A;  1VKP A;  3BPB A;  1BWD A;  4N2K A;  4YTB A;  2DEY X;  4N2D A;  4N2B A;  6JDW A;  4N2L A;  5M3Q A;  3APN A;  5AN9 I;  4N28 A;  4N2H A;  2AAF A;  8JDW A;  2ACI A;  4YT9 A;  9JDW A;  4N2I A;  4N26 A;  2JAJ A;  3JDW A;  4N24 A;  4DKT A;  4X8C A;  1H70 A;  5JDW A;  2JDX A;  2DW5 A;  1LXY A;  2Q3U A;  4N2N A;  4N2G A;  4X8G A;  2CI3 A;  4JDW A;  2ABR A;  5HP5 A;  2A9G A;  3I2E A;  4N20 A;  1YNI A;  7JDW A;  1ZBR A;  2CI6 A;  3B1T A;  3RHY A;  4N2E A;  4N2C A; 
#chains in the Genus database with same CATH homology
 4YTG A;  2JDW A;  3H7C X;  3H7K A;  4E4J A;  1G61 A;  2CI5 A;  4N2M A;  1WD8 A;  3I4A A;  4N2F A;  1RXX A;  2CI1 A;  3HVM A;  2DEX X;  2C6Z A;  3APM A;  3P8P A;  2CI4 A;  1S9R A;  2JER A;  2CI7 A;  1WDA A;  5AK8 A;  2DEW X;  5AK7 A;  4BOF A;  2CMU A;  4N2A A;  3P8E A;  1XKN A;  4N22 A;  4N25 A;  1JDW A;  1WD9 A;  1JDX A;  2JAI A;  2EWO A;  3B1U A;  1G62 A;  1VKP A;  3BPB A;  1BWD A;  4N2K A;  4YTB A;  2DEY X;  4N2D A;  4N2B A;  6JDW A;  4N2L A;  5M3Q A;  3APN A;  5AN9 I;  4N28 A;  4N2H A;  2AAF A;  8JDW A;  2ACI A;  4YT9 A;  9JDW A;  4N2I A;  4N26 A;  2JAJ A;  3JDW A;  4N24 A;  4DKT A;  4X8C A;  1H70 A;  5JDW A;  2JDX A;  2DW5 A;  1LXY A;  2Q3U A;  4N2N A;  4N2G A;  4X8G A;  2CI3 A;  4JDW A;  2ABR A;  5HP5 A;  2A9G A;  3I2E A;  4N20 A;  7JDW A;  1ZBR A;  2CI6 A;  3B1T A;  3RHY A;  4N2E A;  4N2C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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