3BT1U

Structure of urokinase receptor, urokinase and vitronectin complex
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
275
structure length
273
Chain Sequence
LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Urokinase-type plasminogen activator
publication title Crystal structures of two human vitronectin, urokinase and urokinase receptor complexes
pubmed doi rcsb
source organism Homo sapiens
total genus 64
structure length 273
sequence length 275
ec nomenclature
pdb deposition date 2007-12-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3bt1U01
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3bt1U03
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3bt1U02
1BTEA 1ONJA 1KL8A 1V6PA 1M9ZA 1RL5A 1TGXA 1G6MA 4XJJA 1DRSA 1MR6A 1NTXA 2NBTA 2H64B 1NTNA 4OM5A 5DU1A 1YWHA 1TXBA 4RUDA 4DO8A 2ERAA 3KFDI 1IDLA 1IDGA 2H7ZB 2MFAA 2J8BA 2X8BB 2H62C 1KBTA 2MJ4A 4BDTB 1CODA 1CXNA 2PJYB 2CRSA 1KBAA 1ES7B 3FEVA 2N99A 1HC9A 5IMYC 1S4YA 2K3GA 2VLWA 1FRAA 3ERAA 2L03A 5DZ5A 5EBXA 1NORA 1PLOA 2QJ9C 4OM4A 1LXHA 3QB4B 2QC1A 3LAQU 3HH7A 1FASA 4UY2C 1QKEA 1CXOA 1F8UB 1KXIA 1KS6A 1H0JA 1W6BA 2CDXA 1KBSA 1HOYA 1VB0A 1FSSB 2I9BE 1HAAA 1NXBA 1I02A 4QTIU 1LJZA 1KFHA 1NEAA 2ABXA 2CRTA 2JQPA 2OFSA 1L4WA 2MHYA 3PLCA 1JE9A 2GOOC 2H64C 1F94A 3NEQA 4IYEA 1LSIA 3BT1U 2JVEA 1ABTA 2PJYC 1ERAA 1TFSA 2MJ0A 2MUOA 4HQPF 1LXGA 1JGKA 1NYSA 2H62D 2H7ZA 1KC4A 1CDRA 1IK8A 1HAJA 5IMTD 2BTXA 1HC9B 1REWC 1CREA 1IJCA 3NH7A 1MAHF 1B41B 2LCRA 4FAOE 2UX2A 5DO6A 2H5FA 4AEAA 1COEA 3EBXA 1UG4A 2H8UA 3BT2U 1QKDA 2QJBC 1CTXA 6EBXA 2LA1A 4ZQYA 1CDSA 2FD6U 1IKCA 3VTSA 2UWRA 1QM7A 3U74U 2GOOB 1CCQA 3NDSA 1RGJA 2MJYA 1IQ9A 2HLRA 2BHIA 4BIKB 1CDQA 2CCXA 2HLQA 1TXAA 1KTZB 1NYUA 1CVOA 1CHVS 3EVSC 1IDIA 3U73U 1FFJA 1FSCA 4LFTA 4FAOC 1IDHA 2QJAC 1CB9A 4EY8B 1ERGA 1JBDA 1XT3A 1ZADA 1FF4A 1LX5B 2CTXA 1KU6B 2L5SA 4P7UA 1BXPA 1CRFA 1CDTA 2MUPA 3KFDE
chains in the Genus database with same CATH superfamily
1BTEA 1ONJA 1KL8A 1V6PA 1M9ZA 1RL5A 1TGXA 1G6MA 4XJJA 1DRSA 1MR6A 1NTXA 2NBTA 2H64B 1NTNA 4OM5A 5DU1A 1YWHA 1TXBA 4RUDA 4DO8A 2ERAA 3KFDI 1IDLA 1IDGA 2H7ZB 2MFAA 2J8BA 2X8BB 2H62C 1KBTA 2MJ4A 4BDTB 1CODA 1CXNA 4KSNA 2PJYB 2CRSA 1KBAA 1ES7B 3FEVA 2N99A 1HC9A 5IMYC 1S4YA 2K3GA 2VLWA 1FRAA 3ERAA 2L03A 5DZ5A 5EBXA 1NORA 1PLOA 2QJ9C 4OM4A 1LXHA 3QB4B 2QC1A 3LAQU 3HH7A 1FASA 4UY2C 1QKEA 1CXOA 1F8UB 1KXIA 1KS6A 1H0JA 1W6BA 2CDXA 1KBSA 1HOYA 1VB0A 1FSSB 2I9BE 1HAAA 1NXBA 1I02A 4QTIU 1LJZA 1KFHA 1NEAA 2ABXA 2CRTA 2JQPA 2OFSA 1L4WA 2MHYA 3PLCA 1JE9A 2GOOC 2H64C 1F94A 3NEQA 4IYEA 1LSIA 3BT1U 2JVEA 1ABTA 2PJYC 1ERAA 1TFSA 2MJ0A 2MUOA 4HQPF 1LXGA 1JGKA 1NYSA 2H62D 2H7ZA 1KC4A 1CDRA 1IK8A 1HAJA 5IMTD 2BTXA 1HC9B 1REWC 1CREA 1IJCA 3NH7A 1MAHF 1B41B 2LCRA 4FAOE 2UX2A 5DO6A 2H5FA 4AEAA 1COEA 3EBXA 1UG4A 2H8UA 3BT2U 1QKDA 2QJBC 1CTXA 6EBXA 2LA1A 4ZQYA 1CDSA 2FD6U 1IKCA 3VTSA 2UWRA 1QM7A 3U74U 2GOOB 1CCQA 3NDSA 1RGJA 2MJYA 1IQ9A 2HLRA 2BHIA 4BIKB 1CDQA 2CCXA 2HLQA 1TXAA 1KTZB 1NYUA 1CVOA 1CHVS 3EVSC 1IDIA 3U73U 1FFJA 1FSCA 4LFTA 4FAOC 1IDHA 2QJAC 1CB9A 4EY8B 1ERGA 1JBDA 1XT3A 1ZADA 1FF4A 1LX5B 2CTXA 1KU6B 2L5SA 4P7UA 1BXPA 1CRFA 1CDTA 2MUPA 3KFDE
chains in the Genus database with same CATH topology
1BTEA 1ONJA 1KL8A 1V6PA 1M9ZA 1RL5A 1TGXA 1G6MA 4XJJA 1DRSA 1MR6A 1NTXA 2NBTA 2H64B 1NTNA 4OM5A 5DU1A 1YWHA 1TXBA 4RUDA 4DO8A 2ERAA 3KFDI 1IDLA 1IDGA 2H7ZB 2MFAA 2J8BA 2X8BB 2H62C 1KBTA 2MJ4A 4BDTB 1CODA 1CXNA 4KSNA 2PJYB 2CRSA 1KBAA 1ES7B 3FEVA 2N99A 1HC9A 5IMYC 1S4YA 2K3GA 2VLWA 1FRAA 3ERAA 2L03A 5DZ5A 5EBXA 1NORA 1PLOA 2QJ9C 4OM4A 1LXHA 3QB4B 2QC1A 3LAQU 3HH7A 1FASA 4UY2C 1QKEA 1CXOA 1F8UB 1KXIA 1KS6A 1H0JA 1W6BA 2CDXA 1KBSA 1HOYA 1VB0A 1FSSB 2I9BE 1HAAA 1NXBA 1I02A 4QTIU 1LJZA 1KFHA 1NEAA 2ABXA 2CRTA 2JQPA 2OFSA 1L4WA 2MHYA 3PLCA 1JE9A 2GOOC 2H64C 1F94A 3NEQA 4IYEA 1LSIA 3BT1U 2JVEA 1ABTA 2PJYC 1ERAA 1TFSA 2MJ0A 2MUOA 4HQPF 1LXGA 1JGKA 1NYSA 2H62D 2H7ZA 1KC4A 1CDRA 1IK8A 1HAJA 5IMTD 2BTXA 1HC9B 1REWC 1CREA 1IJCA 3NH7A 1MAHF 1B41B 2LCRA 4FAOE 2UX2A 5DO6A 2H5FA 4AEAA 1COEA 3EBXA 1UG4A 2H8UA 3BT2U 1QKDA 2QJBC 1CTXA 6EBXA 2LA1A 4ZQYA 1CDSA 2FD6U 1IKCA 3VTSA 2UWRA 1QM7A 3U74U 2GOOB 1CCQA 3NDSA 1RGJA 2MJYA 1IQ9A 2HLRA 2BHIA 4BIKB 1CDQA 2CCXA 2HLQA 1TXAA 1KTZB 1NYUA 1CVOA 1CHVS 3EVSC 1IDIA 3U73U 1FFJA 1FSCA 4LFTA 4FAOC 1IDHA 2QJAC 1CB9A 4EY8B 1ERGA 1JBDA 1XT3A 1ZADA 1FF4A 1LX5B 2CTXA 1KU6B 2L5SA 4P7UA 1BXPA 1CRFA 1CDTA 2MUPA 3KFDE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BTE A;  1ONJ A;  1KL8 A;  1V6P A;  1M9Z A;  1RL5 A;  1TGX A;  1G6M A;  4XJJ A;  1DRS A;  1MR6 A;  1NTX A;  2NBT A;  2H64 B;  1NTN A;  4OM5 A;  5DU1 A;  1YWH A;  1TXB A;  4RUD A;  4DO8 A;  2ERA A;  3KFD I;  1IDL A;  1IDG A;  2H7Z B;  2MFA A;  2J8B A;  2X8B B;  2H62 C;  1KBT A;  2MJ4 A;  4BDT B;  1COD A;  1CXN A;  2PJY B;  2CRS A;  1KBA A;  1ES7 B;  3FEV A;  2N99 A;  1HC9 A;  5IMY C;  1S4Y A;  2K3G A;  2VLW A;  1FRA A;  3ERA A;  2L03 A;  5DZ5 A;  5EBX A;  1NOR A;  1PLO A;  2QJ9 C;  4OM4 A;  1LXH A;  3QB4 B;  2QC1 A;  3LAQ U;  3HH7 A;  1FAS A;  4UY2 C;  1QKE A;  1CXO A;  1F8U B;  1KXI A;  1KS6 A;  1H0J A;  1W6B A;  2CDX A;  1KBS A;  1HOY A;  1VB0 A;  1FSS B;  2I9B E;  1HAA A;  1NXB A;  1I02 A;  4QTI U;  1LJZ A;  1KFH A;  1NEA A;  2ABX A;  2CRT A;  2JQP A;  2OFS A;  1L4W A;  2MHY A;  3PLC A;  1JE9 A;  2GOO C;  2H64 C;  1F94 A;  3NEQ A;  4IYE A;  1LSI A;  3BT1 U;  2JVE A;  1ABT A;  2PJY C;  1ERA A;  1TFS A;  2MJ0 A;  2MUO A;  4HQP F;  1LXG A;  1JGK A;  1NYS A;  2H62 D;  2H7Z A;  1KC4 A;  1CDR A;  1IK8 A;  1HAJ A;  5IMT D;  2BTX A;  1HC9 B;  1REW C;  1CRE A;  1IJC A;  3NH7 A;  1MAH F;  1B41 B;  2LCR A;  4FAO E;  2UX2 A;  5DO6 A;  2H5F A;  4AEA A;  1COE A;  3EBX A;  1UG4 A;  2H8U A;  3BT2 U;  1QKD A;  2QJB C;  1CTX A;  6EBX A;  2LA1 A;  4ZQY A;  1CDS A;  2FD6 U;  1IKC A;  3VTS A;  2UWR A;  1QM7 A;  3U74 U;  2GOO B;  1CCQ A;  3NDS A;  1RGJ A;  2MJY A;  1IQ9 A;  2HLR A;  2BHI A;  4BIK B;  1CDQ A;  2CCX A;  2HLQ A;  1TXA A;  1KTZ B;  1NYU A;  1CVO A;  1CHV S;  3EVS C;  1IDI A;  3U73 U;  1FFJ A;  1FSC A;  4LFT A;  4FAO C;  1IDH A;  2QJA C;  1CB9 A;  4EY8 B;  1ERG A;  1JBD A;  1XT3 A;  1ZAD A;  1FF4 A;  1LX5 B;  2CTX A;  1KU6 B;  2L5S A;  4P7U A;  1BXP A;  1CRF A;  1CDT A;  2MUP A;  3KFD E; 
#chains in the Genus database with same CATH topology
 1BTE A;  1ONJ A;  1KL8 A;  1V6P A;  1M9Z A;  1RL5 A;  1TGX A;  1G6M A;  4XJJ A;  1DRS A;  1MR6 A;  1NTX A;  2NBT A;  2H64 B;  1NTN A;  4OM5 A;  5DU1 A;  1YWH A;  1TXB A;  4RUD A;  4DO8 A;  2ERA A;  3KFD I;  1IDL A;  1IDG A;  2H7Z B;  2MFA A;  2J8B A;  2X8B B;  2H62 C;  1KBT A;  2MJ4 A;  4BDT B;  1COD A;  1CXN A;  4KSN A;  2PJY B;  2CRS A;  1KBA A;  1ES7 B;  3FEV A;  2N99 A;  1HC9 A;  5IMY C;  1S4Y A;  2K3G A;  2VLW A;  1FRA A;  3ERA A;  2L03 A;  5DZ5 A;  5EBX A;  1NOR A;  1PLO A;  2QJ9 C;  4OM4 A;  1LXH A;  3QB4 B;  2QC1 A;  3LAQ U;  3HH7 A;  1FAS A;  4UY2 C;  1QKE A;  1CXO A;  1F8U B;  1KXI A;  1KS6 A;  1H0J A;  1W6B A;  2CDX A;  1KBS A;  1HOY A;  1VB0 A;  1FSS B;  2I9B E;  1HAA A;  1NXB A;  1I02 A;  4QTI U;  1LJZ A;  1KFH A;  1NEA A;  2ABX A;  2CRT A;  2JQP A;  2OFS A;  1L4W A;  2MHY A;  3PLC A;  1JE9 A;  2GOO C;  2H64 C;  1F94 A;  3NEQ A;  4IYE A;  1LSI A;  3BT1 U;  2JVE A;  1ABT A;  2PJY C;  1ERA A;  1TFS A;  2MJ0 A;  2MUO A;  4HQP F;  1LXG A;  1JGK A;  1NYS A;  2H62 D;  2H7Z A;  1KC4 A;  1CDR A;  1IK8 A;  1HAJ A;  5IMT D;  2BTX A;  1HC9 B;  1REW C;  1CRE A;  1IJC A;  3NH7 A;  1MAH F;  1B41 B;  2LCR A;  4FAO E;  2UX2 A;  5DO6 A;  2H5F A;  4AEA A;  1COE A;  3EBX A;  1UG4 A;  2H8U A;  3BT2 U;  1QKD A;  2QJB C;  1CTX A;  6EBX A;  2LA1 A;  4ZQY A;  1CDS A;  2FD6 U;  1IKC A;  3VTS A;  2UWR A;  1QM7 A;  3U74 U;  2GOO B;  1CCQ A;  3NDS A;  1RGJ A;  2MJY A;  1IQ9 A;  2HLR A;  2BHI A;  4BIK B;  1CDQ A;  2CCX A;  2HLQ A;  1TXA A;  1KTZ B;  1NYU A;  1CVO A;  1CHV S;  3EVS C;  1IDI A;  3U73 U;  1FFJ A;  1FSC A;  4LFT A;  4FAO C;  1IDH A;  2QJA C;  1CB9 A;  4EY8 B;  1ERG A;  1JBD A;  1XT3 A;  1ZAD A;  1FF4 A;  1LX5 B;  2CTX A;  1KU6 B;  2L5S A;  4P7U A;  1BXP A;  1CRF A;  1CDT A;  2MUP A;  3KFD E; 
#chains in the Genus database with same CATH homology
 1BTE A;  1ONJ A;  1KL8 A;  1V6P A;  1M9Z A;  1RL5 A;  1TGX A;  1G6M A;  4XJJ A;  1DRS A;  1MR6 A;  1NTX A;  2NBT A;  2H64 B;  1NTN A;  4OM5 A;  5DU1 A;  1YWH A;  1TXB A;  4RUD A;  4DO8 A;  2ERA A;  3KFD I;  1IDL A;  1IDG A;  2H7Z B;  2MFA A;  2J8B A;  2X8B B;  2H62 C;  1KBT A;  2MJ4 A;  4BDT B;  1COD A;  1CXN A;  4KSN A;  2PJY B;  2CRS A;  1KBA A;  1ES7 B;  3FEV A;  2N99 A;  1HC9 A;  5IMY C;  1S4Y A;  2K3G A;  2VLW A;  1FRA A;  3ERA A;  2L03 A;  5DZ5 A;  5EBX A;  1NOR A;  1PLO A;  2QJ9 C;  4OM4 A;  1LXH A;  3QB4 B;  2QC1 A;  3LAQ U;  3HH7 A;  1FAS A;  4UY2 C;  1QKE A;  1CXO A;  1F8U B;  1KXI A;  1KS6 A;  1H0J A;  1W6B A;  2CDX A;  1KBS A;  1HOY A;  1VB0 A;  1FSS B;  2I9B E;  1HAA A;  1NXB A;  1I02 A;  4QTI U;  1LJZ A;  1KFH A;  1NEA A;  2ABX A;  2CRT A;  2JQP A;  2OFS A;  1L4W A;  2MHY A;  3PLC A;  1JE9 A;  2GOO C;  2H64 C;  1F94 A;  3NEQ A;  4IYE A;  1LSI A;  3BT1 U;  2JVE A;  1ABT A;  2PJY C;  1ERA A;  1TFS A;  2MJ0 A;  2MUO A;  4HQP F;  1LXG A;  1JGK A;  1NYS A;  2H62 D;  2H7Z A;  1KC4 A;  1CDR A;  1IK8 A;  1HAJ A;  5IMT D;  2BTX A;  1HC9 B;  1REW C;  1CRE A;  1IJC A;  3NH7 A;  1MAH F;  1B41 B;  2LCR A;  4FAO E;  2UX2 A;  5DO6 A;  2H5F A;  4AEA A;  1COE A;  3EBX A;  1UG4 A;  2H8U A;  3BT2 U;  1QKD A;  2QJB C;  1CTX A;  6EBX A;  2LA1 A;  4ZQY A;  1CDS A;  2FD6 U;  1IKC A;  3VTS A;  2UWR A;  1QM7 A;  3U74 U;  2GOO B;  1CCQ A;  3NDS A;  1RGJ A;  2MJY A;  1IQ9 A;  2HLR A;  2BHI A;  4BIK B;  1CDQ A;  2CCX A;  2HLQ A;  1TXA A;  1KTZ B;  1NYU A;  1CVO A;  1CHV S;  3EVS C;  1IDI A;  3U73 U;  1FFJ A;  1FSC A;  4LFT A;  4FAO C;  1IDH A;  2QJA C;  1CB9 A;  4EY8 B;  1ERG A;  1JBD A;  1XT3 A;  1ZAD A;  1FF4 A;  1LX5 B;  2CTX A;  1KU6 B;  2L5S A;  4P7U A;  1BXP A;  1CRF A;  1CDT A;  2MUP A;  3KFD E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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