3CB5A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form a)
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
444
structure length
444
Chain Sequence
GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFFGED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transcription
molecule keywords FACT complex subunit spt16
total genus 150
structure length 444
sequence length 444
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb5A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb5A02
1WL9A 3OVKA 1YW7A 1O0XA 2GGBA 2GG7A 4IKRA 1W2MA 2BWTA 1KQ9A 2GTXA 2DFIA 4MATA 4U6WA 3FMRA 3PEBA 2EVOA 3IL0A 5JI6A 4JUQA 1B59A 1C23A 2BWWA 4IPAA 5D6FA 3TB5A 2BHBA 4KM3A 1C24A 2GA2A 2ADUA 1QXWA 1XGMA 3BIQA 2BHAA 1YJ3A 3IU8A 2BWXA 1YVMA 4FO8A 4FLLA 1XGNA 1PV9A 4RGZ1 2BWUA 3TAVA 2GZ5A 1QXYA 4R60A 4FKCA 3CTZA 3L7GA 1M35A 1WY2A 1YW9A 4FUKA 4A6WA 4ZWPA 4RZYA 5CIKA 4U73A 2GU6A 2P9AA 4IU6A 4IKSA 3PKCA 2V6CA 2EA2A 3S6BA 1MATA 1QXZA 1R5HA 3IU9A 2B3LA 3D27A 1CHMA 2B3HA 3O5VA 2V3XA 5FCHA 2Q92A 2ZSGA 3FM3A 2IW2A 1QZYA 4RZZA 3PKBA 4IDYA 4IKTA 5JHUA 4EGEA 2EVMA 1JAWA 4OOKA 2OKNA 2Q94A 4U6ZA 4U6EA 1C21A 4ZWOA 2P99A 2GG8A 5E5BA 3BITA 2Q93A 1B6AA 1KQ0A 3PKAA 2Q8KA 4HXXA 3QOCA 3CB5A 3PKDA 3IG4A 2GG2A 3RORA 4QR8A 2Q95A 4PNCA 2BWYA 4ZNGA 1W7VA 4IKUA 1XGSA 2BB7A 2NQ6A 3FMQA 2Q96A 2G6PA 1C22A 2GU5A 3Q6DA 2BHCA 3PN9A 1WN1A 2BHDA 2BN7A 4U6JA 4S01A 5E2CA 5CE6A 4S2RP 4B28A 2GG5A 3MX6A 4IF7A 5CDLA 2GG9A 2BWVA 1A16A 1R5GA 1XNZA 3OOOA 2B3KA 1R58A 4FO7A 2GU4A 3BIPA 2GG3A 4U69A 5CLSA 2V3YA 2EA4A 2MATA 3CB6A 3I7MA 4PV4A 5CDVA 4FLJA 4U6CA 4IECA 4ZWUA 2P98A 1WBQA 2OAZA 4U71A 4U76A 2EVCA 4Z7MA 2GG0A 2HOWA 2GU7A 2NQ7A 2GGCA 4S2TP 1KP0A 4A6VA 4U75A 3MR1A 4FLIA 4FLKA 5FCFA 4S00A 3L24A 1C27A 3MATA 1WKMA 3PKEA 3IU7A 5D6EA 2V3ZA 5CNXA 1XGOA 1YW8A 4U70A 4U1BA 2BH3A 3RVAA 5JFRA 1N51A 5CDEA 1BN5A 1WL6A 1Y1NA 2BWSA 1WLRA 1BOAA
chains in the Genus database with same CATH superfamily
1WL9A 3OVKA 1YW7A 1O0XA 2GGBA 2GG7A 4IKRA 1W2MA 2BWTA 1KQ9A 2GTXA 2DFIA 4MATA 4U6WA 3FMRA 3PEBA 2EVOA 3IL0A 5JI6A 4JUQA 1B59A 1C23A 2BWWA 4IPAA 5D6FA 3TB5A 2BHBA 4KM3A 1C24A 2GA2A 2ADUA 1QXWA 1XGMA 3BIQA 2BHAA 1YJ3A 3IU8A 2BWXA 1YVMA 4FO8A 4FLLA 1XGNA 1PV9A 4RGZ1 2BWUA 3TAVA 2GZ5A 1QXYA 4R60A 4FKCA 3CTZA 3L7GA 1M35A 1WY2A 1YW9A 4FUKA 4A6WA 4ZWPA 4RZYA 5CIKA 4U73A 2GU6A 2P9AA 4IU6A 4IKSA 3PKCA 2V6CA 2EA2A 3S6BA 1MATA 1QXZA 1R5HA 3IU9A 2B3LA 3D27A 1CHMA 2B3HA 3O5VA 2V3XA 5FCHA 2Q92A 2ZSGA 3FM3A 2IW2A 1QZYA 4RZZA 3PKBA 4IDYA 4IKTA 5JHUA 4EGEA 2EVMA 1JAWA 4OOKA 2OKNA 2Q94A 4U6ZA 4U6EA 1C21A 4ZWOA 2P99A 2GG8A 5E5BA 3BITA 2Q93A 1B6AA 1KQ0A 3PKAA 2Q8KA 4HXXA 3QOCA 3CB5A 3PKDA 3IG4A 2GG2A 3RORA 4QR8A 2Q95A 4PNCA 2BWYA 4ZNGA 1W7VA 4IKUA 1XGSA 2BB7A 2NQ6A 3FMQA 2Q96A 2G6PA 1C22A 2GU5A 3Q6DA 2BHCA 3PN9A 1WN1A 2BHDA 2BN7A 4U6JA 4S01A 5E2CA 5CE6A 4S2RP 4B28A 2GG5A 3MX6A 4IF7A 5CDLA 2GG9A 2BWVA 1A16A 1R5GA 1XNZA 3OOOA 2B3KA 1R58A 4FO7A 2GU4A 3BIPA 2GG3A 4U69A 5CLSA 2V3YA 2EA4A 2MATA 3CB6A 3I7MA 4PV4A 5CDVA 4FLJA 4U6CA 4IECA 4ZWUA 2P98A 1WBQA 2OAZA 4U71A 4U76A 2EVCA 4Z7MA 2GG0A 2HOWA 2GU7A 2NQ7A 2GGCA 4S2TP 1KP0A 4A6VA 4U75A 3MR1A 4FLIA 4FLKA 5FCFA 4S00A 3L24A 1C27A 3MATA 1WKMA 3PKEA 3IU7A 5D6EA 2V3ZA 5CNXA 1XGOA 1YW8A 4U70A 4U1BA 2BH3A 3RVAA 5JFRA 1N51A 5CDEA 1BN5A 1WL6A 1Y1NA 2BWSA 1WLRA 1BOAA
chains in the Genus database with same CATH topology
1WL9A 3OVKA 1YW7A 1O0XA 2GGBA 2GG7A 4IKRA 1W2MA 2BWTA 1KQ9A 2GTXA 2DFIA 4MATA 4U6WA 3FMRA 3PEBA 2EVOA 3IL0A 5JI6A 4JUQA 1B59A 1C23A 2BWWA 4IPAA 5D6FA 3TB5A 2BHBA 4KM3A 1C24A 2GA2A 2ADUA 1QXWA 1XGMA 3BIQA 2BHAA 1YJ3A 3IU8A 2BWXA 1YVMA 4FO8A 4FLLA 1XGNA 1PV9A 4RGZ1 2BWUA 3TAVA 2GZ5A 1QXYA 4R60A 4FKCA 3CTZA 3L7GA 1M35A 1WY2A 1YW9A 4FUKA 4A6WA 4ZWPA 4RZYA 5CIKA 4U73A 2GU6A 2P9AA 4IU6A 4IKSA 3PKCA 2V6CA 2EA2A 3S6BA 1MATA 1QXZA 1R5HA 3IU9A 2B3LA 3D27A 1CHMA 2B3HA 3O5VA 2V3XA 5FCHA 2Q92A 2ZSGA 3FM3A 2IW2A 1QZYA 4RZZA 3PKBA 4IDYA 4IKTA 5JHUA 4EGEA 2EVMA 1JAWA 4OOKA 2OKNA 2Q94A 4U6ZA 4U6EA 1C21A 4ZWOA 2P99A 2GG8A 5E5BA 3BITA 2Q93A 1B6AA 1KQ0A 3PKAA 2Q8KA 4HXXA 3QOCA 3CB5A 3PKDA 3IG4A 2GG2A 3RORA 4QR8A 2Q95A 4PNCA 2BWYA 4ZNGA 1W7VA 4IKUA 1XGSA 2BB7A 2NQ6A 3FMQA 2Q96A 2G6PA 1C22A 2GU5A 3Q6DA 2BHCA 3PN9A 1WN1A 2BHDA 2BN7A 4U6JA 4S01A 5E2CA 5CE6A 4S2RP 4B28A 2GG5A 3MX6A 4IF7A 5CDLA 2GG9A 2BWVA 1A16A 1R5GA 1XNZA 3OOOA 2B3KA 1R58A 4FO7A 2GU4A 3BIPA 2GG3A 4U69A 5CLSA 2V3YA 2EA4A 2MATA 3CB6A 3I7MA 4PV4A 5CDVA 4FLJA 4U6CA 4IECA 4ZWUA 2P98A 1WBQA 2OAZA 4U71A 4U76A 2EVCA 4Z7MA 2GG0A 2HOWA 2GU7A 2NQ7A 2GGCA 4S2TP 1KP0A 4A6VA 4U75A 3MR1A 4FLIA 4FLKA 5FCFA 4S00A 3L24A 1C27A 3MATA 1WKMA 3PKEA 3IU7A 5D6EA 2V3ZA 5CNXA 1XGOA 1YW8A 4U70A 4U1BA 2BH3A 3RVAA 5JFRA 1N51A 5CDEA 1BN5A 1WL6A 1Y1NA 2BWSA 1WLRA 1BOAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WL9 A;  3OVK A;  1YW7 A;  1O0X A;  2GGB A;  2GG7 A;  4IKR A;  1W2M A;  2BWT A;  1KQ9 A;  2GTX A;  2DFI A;  4MAT A;  4U6W A;  3FMR A;  3PEB A;  2EVO A;  3IL0 A;  5JI6 A;  4JUQ A;  1B59 A;  1C23 A;  2BWW A;  4IPA A;  5D6F A;  3TB5 A;  2BHB A;  4KM3 A;  1C24 A;  2GA2 A;  2ADU A;  1QXW A;  1XGM A;  3BIQ A;  2BHA A;  1YJ3 A;  3IU8 A;  2BWX A;  1YVM A;  4FO8 A;  4FLL A;  1XGN A;  1PV9 A;  4RGZ 1;  2BWU A;  3TAV A;  2GZ5 A;  1QXY A;  4R60 A;  4FKC A;  3CTZ A;  3L7G A;  1M35 A;  1WY2 A;  1YW9 A;  4FUK A;  4A6W A;  4ZWP A;  4RZY A;  5CIK A;  4U73 A;  2GU6 A;  2P9A A;  4IU6 A;  4IKS A;  3PKC A;  2V6C A;  2EA2 A;  3S6B A;  1MAT A;  1QXZ A;  1R5H A;  3IU9 A;  2B3L A;  3D27 A;  1CHM A;  2B3H A;  3O5V A;  2V3X A;  5FCH A;  2Q92 A;  2ZSG A;  3FM3 A;  2IW2 A;  1QZY A;  4RZZ A;  3PKB A;  4IDY A;  4IKT A;  5JHU A;  4EGE A;  2EVM A;  1JAW A;  4OOK A;  2OKN A;  2Q94 A;  4U6Z A;  4U6E A;  1C21 A;  4ZWO A;  2P99 A;  2GG8 A;  5E5B A;  3BIT A;  2Q93 A;  1B6A A;  1KQ0 A;  3PKA A;  2Q8K A;  4HXX A;  3QOC A;  3CB5 A;  3PKD A;  3IG4 A;  2GG2 A;  3ROR A;  4QR8 A;  2Q95 A;  4PNC A;  2BWY A;  4ZNG A;  1W7V A;  4IKU A;  1XGS A;  2BB7 A;  2NQ6 A;  3FMQ A;  2Q96 A;  2G6P A;  1C22 A;  2GU5 A;  3Q6D A;  2BHC A;  3PN9 A;  1WN1 A;  2BHD A;  2BN7 A;  4U6J A;  4S01 A;  5E2C A;  5CE6 A;  4S2R P;  4B28 A;  2GG5 A;  3MX6 A;  4IF7 A;  5CDL A;  2GG9 A;  2BWV A;  1A16 A;  1R5G A;  1XNZ A;  3OOO A;  2B3K A;  1R58 A;  4FO7 A;  2GU4 A;  3BIP A;  2GG3 A;  4U69 A;  5CLS A;  2V3Y A;  2EA4 A;  2MAT A;  3CB6 A;  3I7M A;  4PV4 A;  5CDV A;  4FLJ A;  4U6C A;  4IEC A;  4ZWU A;  2P98 A;  1WBQ A;  2OAZ A;  4U71 A;  4U76 A;  2EVC A;  4Z7M A;  2GG0 A;  2HOW A;  2GU7 A;  2NQ7 A;  2GGC A;  4S2T P;  1KP0 A;  4A6V A;  4U75 A;  3MR1 A;  4FLI A;  4FLK A;  5FCF A;  4S00 A;  3L24 A;  1C27 A;  3MAT A;  1WKM A;  3PKE A;  3IU7 A;  5D6E A;  2V3Z A;  5CNX A;  1XGO A;  1YW8 A;  4U70 A;  4U1B A;  2BH3 A;  3RVA A;  5JFR A;  1N51 A;  5CDE A;  1BN5 A;  1WL6 A;  1Y1N A;  2BWS A;  1WLR A;  1BOA A; 
#chains in the Genus database with same CATH topology
 1WL9 A;  3OVK A;  1YW7 A;  1O0X A;  2GGB A;  2GG7 A;  4IKR A;  1W2M A;  2BWT A;  1KQ9 A;  2GTX A;  2DFI A;  4MAT A;  4U6W A;  3FMR A;  3PEB A;  2EVO A;  3IL0 A;  5JI6 A;  4JUQ A;  1B59 A;  1C23 A;  2BWW A;  4IPA A;  5D6F A;  3TB5 A;  2BHB A;  4KM3 A;  1C24 A;  2GA2 A;  2ADU A;  1QXW A;  1XGM A;  3BIQ A;  2BHA A;  1YJ3 A;  3IU8 A;  2BWX A;  1YVM A;  4FO8 A;  4FLL A;  1XGN A;  1PV9 A;  4RGZ 1;  2BWU A;  3TAV A;  2GZ5 A;  1QXY A;  4R60 A;  4FKC A;  3CTZ A;  3L7G A;  1M35 A;  1WY2 A;  1YW9 A;  4FUK A;  4A6W A;  4ZWP A;  4RZY A;  5CIK A;  4U73 A;  2GU6 A;  2P9A A;  4IU6 A;  4IKS A;  3PKC A;  2V6C A;  2EA2 A;  3S6B A;  1MAT A;  1QXZ A;  1R5H A;  3IU9 A;  2B3L A;  3D27 A;  1CHM A;  2B3H A;  3O5V A;  2V3X A;  5FCH A;  2Q92 A;  2ZSG A;  3FM3 A;  2IW2 A;  1QZY A;  4RZZ A;  3PKB A;  4IDY A;  4IKT A;  5JHU A;  4EGE A;  2EVM A;  1JAW A;  4OOK A;  2OKN A;  2Q94 A;  4U6Z A;  4U6E A;  1C21 A;  4ZWO A;  2P99 A;  2GG8 A;  5E5B A;  3BIT A;  2Q93 A;  1B6A A;  1KQ0 A;  3PKA A;  2Q8K A;  4HXX A;  3QOC A;  3CB5 A;  3PKD A;  3IG4 A;  2GG2 A;  3ROR A;  4QR8 A;  2Q95 A;  4PNC A;  2BWY A;  4ZNG A;  1W7V A;  4IKU A;  1XGS A;  2BB7 A;  2NQ6 A;  3FMQ A;  2Q96 A;  2G6P A;  1C22 A;  2GU5 A;  3Q6D A;  2BHC A;  3PN9 A;  1WN1 A;  2BHD A;  2BN7 A;  4U6J A;  4S01 A;  5E2C A;  5CE6 A;  4S2R P;  4B28 A;  2GG5 A;  3MX6 A;  4IF7 A;  5CDL A;  2GG9 A;  2BWV A;  1A16 A;  1R5G A;  1XNZ A;  3OOO A;  2B3K A;  1R58 A;  4FO7 A;  2GU4 A;  3BIP A;  2GG3 A;  4U69 A;  5CLS A;  2V3Y A;  2EA4 A;  2MAT A;  3CB6 A;  3I7M A;  4PV4 A;  5CDV A;  4FLJ A;  4U6C A;  4IEC A;  4ZWU A;  2P98 A;  1WBQ A;  2OAZ A;  4U71 A;  4U76 A;  2EVC A;  4Z7M A;  2GG0 A;  2HOW A;  2GU7 A;  2NQ7 A;  2GGC A;  4S2T P;  1KP0 A;  4A6V A;  4U75 A;  3MR1 A;  4FLI A;  4FLK A;  5FCF A;  4S00 A;  3L24 A;  1C27 A;  3MAT A;  1WKM A;  3PKE A;  3IU7 A;  5D6E A;  2V3Z A;  5CNX A;  1XGO A;  1YW8 A;  4U70 A;  4U1B A;  2BH3 A;  3RVA A;  5JFR A;  1N51 A;  5CDE A;  1BN5 A;  1WL6 A;  1Y1N A;  2BWS A;  1WLR A;  1BOA A; 
#chains in the Genus database with same CATH homology
 1WL9 A;  3OVK A;  1YW7 A;  1O0X A;  2GGB A;  2GG7 A;  4IKR A;  1W2M A;  2BWT A;  1KQ9 A;  2GTX A;  2DFI A;  4MAT A;  4U6W A;  3FMR A;  3PEB A;  2EVO A;  3IL0 A;  5JI6 A;  4JUQ A;  1B59 A;  1C23 A;  2BWW A;  4IPA A;  5D6F A;  3TB5 A;  2BHB A;  4KM3 A;  1C24 A;  2GA2 A;  2ADU A;  1QXW A;  1XGM A;  3BIQ A;  2BHA A;  1YJ3 A;  3IU8 A;  2BWX A;  1YVM A;  4FO8 A;  4FLL A;  1XGN A;  1PV9 A;  4RGZ 1;  2BWU A;  3TAV A;  2GZ5 A;  1QXY A;  4R60 A;  4FKC A;  3CTZ A;  3L7G A;  1M35 A;  1WY2 A;  1YW9 A;  4FUK A;  4A6W A;  4ZWP A;  4RZY A;  5CIK A;  4U73 A;  2GU6 A;  2P9A A;  4IU6 A;  4IKS A;  3PKC A;  2V6C A;  2EA2 A;  3S6B A;  1MAT A;  1QXZ A;  1R5H A;  3IU9 A;  2B3L A;  3D27 A;  1CHM A;  2B3H A;  3O5V A;  2V3X A;  5FCH A;  2Q92 A;  2ZSG A;  3FM3 A;  2IW2 A;  1QZY A;  4RZZ A;  3PKB A;  4IDY A;  4IKT A;  5JHU A;  4EGE A;  2EVM A;  1JAW A;  4OOK A;  2OKN A;  2Q94 A;  4U6Z A;  4U6E A;  1C21 A;  4ZWO A;  2P99 A;  2GG8 A;  5E5B A;  3BIT A;  2Q93 A;  1B6A A;  1KQ0 A;  3PKA A;  2Q8K A;  4HXX A;  3QOC A;  3CB5 A;  3PKD A;  3IG4 A;  2GG2 A;  3ROR A;  4QR8 A;  2Q95 A;  4PNC A;  2BWY A;  4ZNG A;  1W7V A;  4IKU A;  1XGS A;  2BB7 A;  2NQ6 A;  3FMQ A;  2Q96 A;  2G6P A;  1C22 A;  2GU5 A;  3Q6D A;  2BHC A;  3PN9 A;  1WN1 A;  2BHD A;  2BN7 A;  4U6J A;  4S01 A;  5E2C A;  5CE6 A;  4S2R P;  4B28 A;  2GG5 A;  3MX6 A;  4IF7 A;  5CDL A;  2GG9 A;  2BWV A;  1A16 A;  1R5G A;  1XNZ A;  3OOO A;  2B3K A;  1R58 A;  4FO7 A;  2GU4 A;  3BIP A;  2GG3 A;  4U69 A;  5CLS A;  2V3Y A;  2EA4 A;  2MAT A;  3CB6 A;  3I7M A;  4PV4 A;  5CDV A;  4FLJ A;  4U6C A;  4IEC A;  4ZWU A;  2P98 A;  1WBQ A;  2OAZ A;  4U71 A;  4U76 A;  2EVC A;  4Z7M A;  2GG0 A;  2HOW A;  2GU7 A;  2NQ7 A;  2GGC A;  4S2T P;  1KP0 A;  4A6V A;  4U75 A;  3MR1 A;  4FLI A;  4FLK A;  5FCF A;  4S00 A;  3L24 A;  1C27 A;  3MAT A;  1WKM A;  3PKE A;  3IU7 A;  5D6E A;  2V3Z A;  5CNX A;  1XGO A;  1YW8 A;  4U70 A;  4U1B A;  2BH3 A;  3RVA A;  5JFR A;  1N51 A;  5CDE A;  1BN5 A;  1WL6 A;  1Y1N A;  2BWS A;  1WLR A;  1BOA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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