3CB6A

Crystal structure of the s. pombe peptidase homology domain of fact complex subunit spt16 (form b)
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
441
structure length
441
Chain Sequence
GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLIDTIQITRSDPIVFTDSPKAQGDISYFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The FACT Spt16 "peptidase" domain is a histone H3-H4 binding module
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transcription
molecule keywords FACT complex subunit spt16
total genus 159
structure length 441
sequence length 441
ec nomenclature
pdb deposition date 2008-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF14826 FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 3cb6A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3cb6A02
2B3KA 1KQ0A 4U73A 4OOKA 4IF7A 1C23A 2GU6A 4U6CA 1C21A 4S00A 3D27A 4ZNGA 2P99A 4FLJA 2IW2A 4IKTA 4A6WA 4JUQA 3CB6A 4R60A 4IU6A 2GG9A 4U71A 4ZWOA 2V6CA 2V3ZA 3CB5A 2BN7A 4RGZ1 4FKCA 1B59A 2Q95A 1PV9A 5CDEA 1C22A 1XGMA 4IKSA 3RVAA 1YJ3A 1R58A 3BIQA 1YW9A 2V3YA 4S2RP 2GGCA 1WL6A 1BOAA 2BWWA 2BWTA 4PNCA 1QXZA 2ADUA 1KP0A 4U69A 1M35A 2BHCA 1WBQA 1XGNA 5CLSA 3PKEA 4U6JA 4ZWPA 2HOWA 3IU8A 2GG5A 3IG4A 1QZYA 4U6EA 4B28A 4IKUA 2ZSGA 3FM3A 1C24A 3PKDA 3PKBA 4IKRA 3MATA 3L24A 2EVOA 1JAWA 5FCHA 4IDYA 4Z7MA 5JFRA 5JI6A 4FLIA 1YVMA 5CDLA 3I7MA 1QXWA 1R5HA 2GU7A 3CTZA 1W7VA 4MATA 3TB5A 2BWUA 2Q8KA 1B6AA 2V3XA 2OKNA 5E5BA 4ZWUA 2GA2A 3BITA 4S2TP 4FUKA 2B3LA 4U76A 2BWYA 2BHBA 3IU7A 2DFIA 3FMQA 3MR1A 1W2MA 2MATA 4U6ZA 1C27A 3IL0A 3BIPA 2BWXA 2Q93A 1XGSA 2Q92A 5D6EA 2GGBA 3PN9A 2P98A 2GG7A 1WL9A 1CHMA 4FO8A 4EGEA 4S01A 2OAZA 3Q6DA 4U1BA 2BHDA 3PEBA 1YW7A 3MX6A 2GU5A 1XGOA 2NQ6A 4IPAA 2B3HA 2GZ5A 3PKAA 1WN1A 2GG3A 1WLRA 4RZYA 2GG0A 4FO7A 3QOCA 5CDVA 2Q96A 5JHUA 2GTXA 2P9AA 1Y1NA 2BH3A 3OOOA 2EVCA 5CIKA 4FLLA 1O0XA 4FLKA 3IU9A 4HXXA 3S6BA 2EA4A 3O5VA 4A6VA 3OVKA 1R5GA 2GG2A 4KM3A 2GG8A 5E2CA 2BWVA 4U75A 2BB7A 2EVMA 2BWSA 2NQ7A 2EA2A 5CNXA 1N51A 1XNZA 3TAVA 1A16A 1WY2A 3PKCA 5D6FA 1WKMA 1KQ9A 2Q94A 1YW8A 4QR8A 1MATA 2BHAA 5CE6A 1BN5A 2G6PA 2GU4A 4U70A 1QXYA 3RORA 4U6WA 4RZZA 4IECA 5FCFA 3FMRA 3L7GA 4PV4A
chains in the Genus database with same CATH superfamily
2B3KA 1KQ0A 4U73A 4OOKA 4IF7A 1C23A 2GU6A 4U6CA 1C21A 4S00A 3D27A 4ZNGA 2P99A 4FLJA 2IW2A 4IKTA 4A6WA 4JUQA 3CB6A 4R60A 4IU6A 2GG9A 4U71A 4ZWOA 2V6CA 2V3ZA 3CB5A 2BN7A 4RGZ1 4FKCA 1B59A 2Q95A 1PV9A 5CDEA 1C22A 1XGMA 4IKSA 3RVAA 1YJ3A 1R58A 3BIQA 1YW9A 2V3YA 4S2RP 2GGCA 1WL6A 1BOAA 2BWWA 2BWTA 4PNCA 1QXZA 2ADUA 1KP0A 4U69A 1M35A 2BHCA 1WBQA 1XGNA 5CLSA 3PKEA 4U6JA 4ZWPA 2HOWA 3IU8A 2GG5A 3IG4A 1QZYA 4U6EA 4B28A 4IKUA 2ZSGA 3FM3A 1C24A 3PKDA 3PKBA 4IKRA 3MATA 3L24A 2EVOA 1JAWA 5FCHA 4IDYA 4Z7MA 5JFRA 5JI6A 4FLIA 1YVMA 5CDLA 3I7MA 1QXWA 1R5HA 2GU7A 3CTZA 1W7VA 4MATA 3TB5A 2BWUA 2Q8KA 1B6AA 2V3XA 2OKNA 5E5BA 4ZWUA 2GA2A 3BITA 4S2TP 4FUKA 2B3LA 4U76A 2BWYA 2BHBA 3IU7A 2DFIA 3FMQA 3MR1A 1W2MA 2MATA 4U6ZA 1C27A 3IL0A 3BIPA 2BWXA 2Q93A 1XGSA 2Q92A 5D6EA 2GGBA 3PN9A 2P98A 2GG7A 1WL9A 1CHMA 4FO8A 4EGEA 4S01A 2OAZA 3Q6DA 4U1BA 2BHDA 3PEBA 1YW7A 3MX6A 2GU5A 1XGOA 2NQ6A 4IPAA 2B3HA 2GZ5A 3PKAA 1WN1A 2GG3A 1WLRA 4RZYA 2GG0A 4FO7A 3QOCA 5CDVA 2Q96A 5JHUA 2GTXA 2P9AA 1Y1NA 2BH3A 3OOOA 2EVCA 5CIKA 4FLLA 1O0XA 4FLKA 3IU9A 4HXXA 3S6BA 2EA4A 3O5VA 4A6VA 3OVKA 1R5GA 2GG2A 4KM3A 2GG8A 5E2CA 2BWVA 4U75A 2BB7A 2EVMA 2BWSA 2NQ7A 2EA2A 5CNXA 1N51A 1XNZA 3TAVA 1A16A 1WY2A 3PKCA 5D6FA 1WKMA 1KQ9A 2Q94A 1YW8A 4QR8A 1MATA 2BHAA 5CE6A 1BN5A 2G6PA 2GU4A 4U70A 1QXYA 3RORA 4U6WA 4RZZA 4IECA 5FCFA 3FMRA 3L7GA 4PV4A
chains in the Genus database with same CATH topology
2B3KA 1KQ0A 4U73A 4OOKA 4IF7A 1C23A 2GU6A 4U6CA 1C21A 4S00A 3D27A 4ZNGA 2P99A 4FLJA 2IW2A 4IKTA 4A6WA 4JUQA 3CB6A 4R60A 4IU6A 2GG9A 4U71A 4ZWOA 2V6CA 2V3ZA 3CB5A 2BN7A 4RGZ1 4FKCA 1B59A 2Q95A 1PV9A 5CDEA 1C22A 1XGMA 4IKSA 3RVAA 1YJ3A 1R58A 3BIQA 1YW9A 2V3YA 4S2RP 2GGCA 1WL6A 1BOAA 2BWWA 2BWTA 4PNCA 1QXZA 2ADUA 1KP0A 4U69A 1M35A 2BHCA 1WBQA 1XGNA 5CLSA 3PKEA 4U6JA 4ZWPA 2HOWA 3IU8A 2GG5A 3IG4A 1QZYA 4U6EA 4B28A 4IKUA 2ZSGA 3FM3A 1C24A 3PKDA 3PKBA 4IKRA 3MATA 3L24A 2EVOA 1JAWA 5FCHA 4IDYA 4Z7MA 5JFRA 5JI6A 4FLIA 1YVMA 5CDLA 3I7MA 1QXWA 1R5HA 2GU7A 3CTZA 1W7VA 4MATA 3TB5A 2BWUA 2Q8KA 1B6AA 2V3XA 2OKNA 5E5BA 4ZWUA 2GA2A 3BITA 4S2TP 4FUKA 2B3LA 4U76A 2BWYA 2BHBA 3IU7A 2DFIA 3FMQA 3MR1A 1W2MA 2MATA 4U6ZA 1C27A 3IL0A 3BIPA 2BWXA 2Q93A 1XGSA 2Q92A 5D6EA 2GGBA 3PN9A 2P98A 2GG7A 1WL9A 1CHMA 4FO8A 4EGEA 4S01A 2OAZA 3Q6DA 4U1BA 2BHDA 3PEBA 1YW7A 3MX6A 2GU5A 1XGOA 2NQ6A 4IPAA 2B3HA 2GZ5A 3PKAA 1WN1A 2GG3A 1WLRA 4RZYA 2GG0A 4FO7A 3QOCA 5CDVA 2Q96A 5JHUA 2GTXA 2P9AA 1Y1NA 2BH3A 3OOOA 2EVCA 5CIKA 4FLLA 1O0XA 4FLKA 3IU9A 4HXXA 3S6BA 2EA4A 3O5VA 4A6VA 3OVKA 1R5GA 2GG2A 4KM3A 2GG8A 5E2CA 2BWVA 4U75A 2BB7A 2EVMA 2BWSA 2NQ7A 2EA2A 5CNXA 1N51A 1XNZA 3TAVA 1A16A 1WY2A 3PKCA 5D6FA 1WKMA 1KQ9A 2Q94A 1YW8A 4QR8A 1MATA 2BHAA 5CE6A 1BN5A 2G6PA 2GU4A 4U70A 1QXYA 3RORA 4U6WA 4RZZA 4IECA 5FCFA 3FMRA 3L7GA 4PV4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B3K A;  1KQ0 A;  4U73 A;  4OOK A;  4IF7 A;  1C23 A;  2GU6 A;  4U6C A;  1C21 A;  4S00 A;  3D27 A;  4ZNG A;  2P99 A;  4FLJ A;  2IW2 A;  4IKT A;  4A6W A;  4JUQ A;  3CB6 A;  4R60 A;  4IU6 A;  2GG9 A;  4U71 A;  4ZWO A;  2V6C A;  2V3Z A;  3CB5 A;  2BN7 A;  4RGZ 1;  4FKC A;  1B59 A;  2Q95 A;  1PV9 A;  5CDE A;  1C22 A;  1XGM A;  4IKS A;  3RVA A;  1YJ3 A;  1R58 A;  3BIQ A;  1YW9 A;  2V3Y A;  4S2R P;  2GGC A;  1WL6 A;  1BOA A;  2BWW A;  2BWT A;  4PNC A;  1QXZ A;  2ADU A;  1KP0 A;  4U69 A;  1M35 A;  2BHC A;  1WBQ A;  1XGN A;  5CLS A;  3PKE A;  4U6J A;  4ZWP A;  2HOW A;  3IU8 A;  2GG5 A;  3IG4 A;  1QZY A;  4U6E A;  4B28 A;  4IKU A;  2ZSG A;  3FM3 A;  1C24 A;  3PKD A;  3PKB A;  4IKR A;  3MAT A;  3L24 A;  2EVO A;  1JAW A;  5FCH A;  4IDY A;  4Z7M A;  5JFR A;  5JI6 A;  4FLI A;  1YVM A;  5CDL A;  3I7M A;  1QXW A;  1R5H A;  2GU7 A;  3CTZ A;  1W7V A;  4MAT A;  3TB5 A;  2BWU A;  2Q8K A;  1B6A A;  2V3X A;  2OKN A;  5E5B A;  4ZWU A;  2GA2 A;  3BIT A;  4S2T P;  4FUK A;  2B3L A;  4U76 A;  2BWY A;  2BHB A;  3IU7 A;  2DFI A;  3FMQ A;  3MR1 A;  1W2M A;  2MAT A;  4U6Z A;  1C27 A;  3IL0 A;  3BIP A;  2BWX A;  2Q93 A;  1XGS A;  2Q92 A;  5D6E A;  2GGB A;  3PN9 A;  2P98 A;  2GG7 A;  1WL9 A;  1CHM A;  4FO8 A;  4EGE A;  4S01 A;  2OAZ A;  3Q6D A;  4U1B A;  2BHD A;  3PEB A;  1YW7 A;  3MX6 A;  2GU5 A;  1XGO A;  2NQ6 A;  4IPA A;  2B3H A;  2GZ5 A;  3PKA A;  1WN1 A;  2GG3 A;  1WLR A;  4RZY A;  2GG0 A;  4FO7 A;  3QOC A;  5CDV A;  2Q96 A;  5JHU A;  2GTX A;  2P9A A;  1Y1N A;  2BH3 A;  3OOO A;  2EVC A;  5CIK A;  4FLL A;  1O0X A;  4FLK A;  3IU9 A;  4HXX A;  3S6B A;  2EA4 A;  3O5V A;  4A6V A;  3OVK A;  1R5G A;  2GG2 A;  4KM3 A;  2GG8 A;  5E2C A;  2BWV A;  4U75 A;  2BB7 A;  2EVM A;  2BWS A;  2NQ7 A;  2EA2 A;  5CNX A;  1N51 A;  1XNZ A;  3TAV A;  1A16 A;  1WY2 A;  3PKC A;  5D6F A;  1WKM A;  1KQ9 A;  2Q94 A;  1YW8 A;  4QR8 A;  1MAT A;  2BHA A;  5CE6 A;  1BN5 A;  2G6P A;  2GU4 A;  4U70 A;  1QXY A;  3ROR A;  4U6W A;  4RZZ A;  4IEC A;  5FCF A;  3FMR A;  3L7G A;  4PV4 A; 
#chains in the Genus database with same CATH topology
 2B3K A;  1KQ0 A;  4U73 A;  4OOK A;  4IF7 A;  1C23 A;  2GU6 A;  4U6C A;  1C21 A;  4S00 A;  3D27 A;  4ZNG A;  2P99 A;  4FLJ A;  2IW2 A;  4IKT A;  4A6W A;  4JUQ A;  3CB6 A;  4R60 A;  4IU6 A;  2GG9 A;  4U71 A;  4ZWO A;  2V6C A;  2V3Z A;  3CB5 A;  2BN7 A;  4RGZ 1;  4FKC A;  1B59 A;  2Q95 A;  1PV9 A;  5CDE A;  1C22 A;  1XGM A;  4IKS A;  3RVA A;  1YJ3 A;  1R58 A;  3BIQ A;  1YW9 A;  2V3Y A;  4S2R P;  2GGC A;  1WL6 A;  1BOA A;  2BWW A;  2BWT A;  4PNC A;  1QXZ A;  2ADU A;  1KP0 A;  4U69 A;  1M35 A;  2BHC A;  1WBQ A;  1XGN A;  5CLS A;  3PKE A;  4U6J A;  4ZWP A;  2HOW A;  3IU8 A;  2GG5 A;  3IG4 A;  1QZY A;  4U6E A;  4B28 A;  4IKU A;  2ZSG A;  3FM3 A;  1C24 A;  3PKD A;  3PKB A;  4IKR A;  3MAT A;  3L24 A;  2EVO A;  1JAW A;  5FCH A;  4IDY A;  4Z7M A;  5JFR A;  5JI6 A;  4FLI A;  1YVM A;  5CDL A;  3I7M A;  1QXW A;  1R5H A;  2GU7 A;  3CTZ A;  1W7V A;  4MAT A;  3TB5 A;  2BWU A;  2Q8K A;  1B6A A;  2V3X A;  2OKN A;  5E5B A;  4ZWU A;  2GA2 A;  3BIT A;  4S2T P;  4FUK A;  2B3L A;  4U76 A;  2BWY A;  2BHB A;  3IU7 A;  2DFI A;  3FMQ A;  3MR1 A;  1W2M A;  2MAT A;  4U6Z A;  1C27 A;  3IL0 A;  3BIP A;  2BWX A;  2Q93 A;  1XGS A;  2Q92 A;  5D6E A;  2GGB A;  3PN9 A;  2P98 A;  2GG7 A;  1WL9 A;  1CHM A;  4FO8 A;  4EGE A;  4S01 A;  2OAZ A;  3Q6D A;  4U1B A;  2BHD A;  3PEB A;  1YW7 A;  3MX6 A;  2GU5 A;  1XGO A;  2NQ6 A;  4IPA A;  2B3H A;  2GZ5 A;  3PKA A;  1WN1 A;  2GG3 A;  1WLR A;  4RZY A;  2GG0 A;  4FO7 A;  3QOC A;  5CDV A;  2Q96 A;  5JHU A;  2GTX A;  2P9A A;  1Y1N A;  2BH3 A;  3OOO A;  2EVC A;  5CIK A;  4FLL A;  1O0X A;  4FLK A;  3IU9 A;  4HXX A;  3S6B A;  2EA4 A;  3O5V A;  4A6V A;  3OVK A;  1R5G A;  2GG2 A;  4KM3 A;  2GG8 A;  5E2C A;  2BWV A;  4U75 A;  2BB7 A;  2EVM A;  2BWS A;  2NQ7 A;  2EA2 A;  5CNX A;  1N51 A;  1XNZ A;  3TAV A;  1A16 A;  1WY2 A;  3PKC A;  5D6F A;  1WKM A;  1KQ9 A;  2Q94 A;  1YW8 A;  4QR8 A;  1MAT A;  2BHA A;  5CE6 A;  1BN5 A;  2G6P A;  2GU4 A;  4U70 A;  1QXY A;  3ROR A;  4U6W A;  4RZZ A;  4IEC A;  5FCF A;  3FMR A;  3L7G A;  4PV4 A; 
#chains in the Genus database with same CATH homology
 2B3K A;  1KQ0 A;  4U73 A;  4OOK A;  4IF7 A;  1C23 A;  2GU6 A;  4U6C A;  1C21 A;  4S00 A;  3D27 A;  4ZNG A;  2P99 A;  4FLJ A;  2IW2 A;  4IKT A;  4A6W A;  4JUQ A;  3CB6 A;  4R60 A;  4IU6 A;  2GG9 A;  4U71 A;  4ZWO A;  2V6C A;  2V3Z A;  3CB5 A;  2BN7 A;  4RGZ 1;  4FKC A;  1B59 A;  2Q95 A;  1PV9 A;  5CDE A;  1C22 A;  1XGM A;  4IKS A;  3RVA A;  1YJ3 A;  1R58 A;  3BIQ A;  1YW9 A;  2V3Y A;  4S2R P;  2GGC A;  1WL6 A;  1BOA A;  2BWW A;  2BWT A;  4PNC A;  1QXZ A;  2ADU A;  1KP0 A;  4U69 A;  1M35 A;  2BHC A;  1WBQ A;  1XGN A;  5CLS A;  3PKE A;  4U6J A;  4ZWP A;  2HOW A;  3IU8 A;  2GG5 A;  3IG4 A;  1QZY A;  4U6E A;  4B28 A;  4IKU A;  2ZSG A;  3FM3 A;  1C24 A;  3PKD A;  3PKB A;  4IKR A;  3MAT A;  3L24 A;  2EVO A;  1JAW A;  5FCH A;  4IDY A;  4Z7M A;  5JFR A;  5JI6 A;  4FLI A;  1YVM A;  5CDL A;  3I7M A;  1QXW A;  1R5H A;  2GU7 A;  3CTZ A;  1W7V A;  4MAT A;  3TB5 A;  2BWU A;  2Q8K A;  1B6A A;  2V3X A;  2OKN A;  5E5B A;  4ZWU A;  2GA2 A;  3BIT A;  4S2T P;  4FUK A;  2B3L A;  4U76 A;  2BWY A;  2BHB A;  3IU7 A;  2DFI A;  3FMQ A;  3MR1 A;  1W2M A;  2MAT A;  4U6Z A;  1C27 A;  3IL0 A;  3BIP A;  2BWX A;  2Q93 A;  1XGS A;  2Q92 A;  5D6E A;  2GGB A;  3PN9 A;  2P98 A;  2GG7 A;  1WL9 A;  1CHM A;  4FO8 A;  4EGE A;  4S01 A;  2OAZ A;  3Q6D A;  4U1B A;  2BHD A;  3PEB A;  1YW7 A;  3MX6 A;  2GU5 A;  1XGO A;  2NQ6 A;  4IPA A;  2B3H A;  2GZ5 A;  3PKA A;  1WN1 A;  2GG3 A;  1WLR A;  4RZY A;  2GG0 A;  4FO7 A;  3QOC A;  5CDV A;  2Q96 A;  5JHU A;  2GTX A;  2P9A A;  1Y1N A;  2BH3 A;  3OOO A;  2EVC A;  5CIK A;  4FLL A;  1O0X A;  4FLK A;  3IU9 A;  4HXX A;  3S6B A;  2EA4 A;  3O5V A;  4A6V A;  3OVK A;  1R5G A;  2GG2 A;  4KM3 A;  2GG8 A;  5E2C A;  2BWV A;  4U75 A;  2BB7 A;  2EVM A;  2BWS A;  2NQ7 A;  2EA2 A;  5CNX A;  1N51 A;  1XNZ A;  3TAV A;  1A16 A;  1WY2 A;  3PKC A;  5D6F A;  1WKM A;  1KQ9 A;  2Q94 A;  1YW8 A;  4QR8 A;  1MAT A;  2BHA A;  5CE6 A;  1BN5 A;  2G6P A;  2GU4 A;  4U70 A;  1QXY A;  3ROR A;  4U6W A;  4RZZ A;  4IEC A;  5FCF A;  3FMR A;  3L7G A;  4PV4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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