3CC4M

Co-crystal structure of anisomycin bound to the 50s ribosomal subunit
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
194
structure length
194
Chain Sequence
ARSAYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 57
structure length 194
sequence length 194
ec nomenclature
pdb deposition date 2008-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00827 Ribosomal_L15e Ribosomal L15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1120.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e 3cc4M00
1KC8N 1YHQM 1YIJM 1YJWM 2QA4M 1VQ4M 1VQ5M 1VQ9M 1YJNM 2QEXM 3CMAM 1K9MN 1M1KN 1VQ8M 1S72M 3CD6M 3CCRM 3CMEM 3CCLM 3I56M 1YITM 1KQSL 3CCSM 1QVFL 3CCUM 3CCJM 3CCMM 1Q81N 1VQMM 1Q7YN 1VQLM 3CCQM 1KD1N 1VQKM 1W2BL 2OTLM 3CXCL 3CC7M 1M90N 3CCEM 3I55M 1K73N 1K8AN 3CCVM 1VQPM 1VQ7M 1N8RN 3G71M 1YI2M 3OW2L 3CPWL 1JJ2L 1Q82N 1VQNM 3CC4M 1NJIN 3G4SM 1YJ9M 2OTJM 3CC2M 1VQ6M 1Q86N 1VQOM 3G6EM 1QVGL
chains in the Genus database with same CATH superfamily
1KC8N 1YHQM 1YIJM 1YJWM 2QA4M 1VQ4M 1VQ5M 1VQ9M 1YJNM 2QEXM 3CMAM 1K9MN 1M1KN 1VQ8M 1S72M 3CD6M 3CCRM 3CMEM 3CCLM 3I56M 1YITM 1KQSL 3CCSM 1QVFL 3CCUM 3CCJM 3CCMM 1Q81N 1VQMM 1Q7YN 1VQLM 3CCQM 1KD1N 1VQKM 1W2BL 2OTLM 3CXCL 3CC7M 1M90N 3CCEM 3I55M 1K73N 1K8AN 3CCVM 1VQPM 1VQ7M 1N8RN 3G71M 1YI2M 3OW2L 3CPWL 1JJ2L 1Q82N 1VQNM 3CC4M 1NJIN 3G4SM 1YJ9M 2OTJM 3CC2M 1VQ6M 1Q86N 1VQOM 3G6EM 1QVGL
chains in the Genus database with same CATH topology
1KC8N 1YHQM 1YIJM 1YJWM 2QA4M 1VQ4M 1VQ5M 1VQ9M 1YJNM 2QEXM 3CMAM 1K9MN 1M1KN 1VQ8M 1S72M 3CD6M 3CCRM 3CMEM 3CCLM 3I56M 1YITM 1KQSL 3CCSM 1QVFL 3CCUM 3CCJM 3CCMM 1Q81N 1VQMM 1Q7YN 1VQLM 3CCQM 1KD1N 1VQKM 1W2BL 2OTLM 3CXCL 3CC7M 1M90N 3CCEM 3I55M 1K73N 1K8AN 3CCVM 1VQPM 1VQ7M 1N8RN 3G71M 1YI2M 3OW2L 3CPWL 1JJ2L 1Q82N 1VQNM 3CC4M 1NJIN 3G4SM 1YJ9M 2OTJM 3CC2M 1VQ6M 1Q86N 1VQOM 3G6EM 1QVGL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KC8 N;  1YHQ M;  1YIJ M;  1YJW M;  2QA4 M;  1VQ4 M;  1VQ5 M;  1VQ9 M;  1YJN M;  2QEX M;  3CMA M;  1K9M N;  1M1K N;  1VQ8 M;  1S72 M;  3CD6 M;  3CCR M;  3CME M;  3CCL M;  3I56 M;  1YIT M;  1KQS L;  3CCS M;  1QVF L;  3CCU M;  3CCJ M;  3CCM M;  1Q81 N;  1VQM M;  1Q7Y N;  1VQL M;  3CCQ M;  1KD1 N;  1VQK M;  1W2B L;  2OTL M;  3CXC L;  3CC7 M;  1M90 N;  3CCE M;  3I55 M;  1K73 N;  1K8A N;  3CCV M;  1VQP M;  1VQ7 M;  1N8R N;  3G71 M;  1YI2 M;  3OW2 L;  3CPW L;  1JJ2 L;  1Q82 N;  1VQN M;  3CC4 M;  1NJI N;  3G4S M;  1YJ9 M;  2OTJ M;  3CC2 M;  1VQ6 M;  1Q86 N;  1VQO M;  3G6E M;  1QVG L; 
#chains in the Genus database with same CATH topology
 1KC8 N;  1YHQ M;  1YIJ M;  1YJW M;  2QA4 M;  1VQ4 M;  1VQ5 M;  1VQ9 M;  1YJN M;  2QEX M;  3CMA M;  1K9M N;  1M1K N;  1VQ8 M;  1S72 M;  3CD6 M;  3CCR M;  3CME M;  3CCL M;  3I56 M;  1YIT M;  1KQS L;  3CCS M;  1QVF L;  3CCU M;  3CCJ M;  3CCM M;  1Q81 N;  1VQM M;  1Q7Y N;  1VQL M;  3CCQ M;  1KD1 N;  1VQK M;  1W2B L;  2OTL M;  3CXC L;  3CC7 M;  1M90 N;  3CCE M;  3I55 M;  1K73 N;  1K8A N;  3CCV M;  1VQP M;  1VQ7 M;  1N8R N;  3G71 M;  1YI2 M;  3OW2 L;  3CPW L;  1JJ2 L;  1Q82 N;  1VQN M;  3CC4 M;  1NJI N;  3G4S M;  1YJ9 M;  2OTJ M;  3CC2 M;  1VQ6 M;  1Q86 N;  1VQO M;  3G6E M;  1QVG L; 
#chains in the Genus database with same CATH homology
 1KC8 N;  1YHQ M;  1YIJ M;  1YJW M;  2QA4 M;  1VQ4 M;  1VQ5 M;  1VQ9 M;  1YJN M;  2QEX M;  3CMA M;  1K9M N;  1M1K N;  1VQ8 M;  1S72 M;  3CD6 M;  3CCR M;  3CME M;  3CCL M;  3I56 M;  1YIT M;  1KQS L;  3CCS M;  1QVF L;  3CCU M;  3CCJ M;  3CCM M;  1Q81 N;  1VQM M;  1Q7Y N;  1VQL M;  3CCQ M;  1KD1 N;  1VQK M;  1W2B L;  2OTL M;  3CXC L;  3CC7 M;  1M90 N;  3CCE M;  3I55 M;  1K73 N;  1K8A N;  3CCV M;  1VQP M;  1VQ7 M;  1N8R N;  3G71 M;  1YI2 M;  3OW2 L;  3CPW L;  1JJ2 L;  1Q82 N;  1VQN M;  3CC4 M;  1NJI N;  3G4S M;  1YJ9 M;  2OTJ M;  3CC2 M;  1VQ6 M;  1Q86 N;  1VQO M;  3G6E M;  1QVG L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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