3CD6U

Co-cystal of large ribosomal subunit mutant g2616a with cc-puromycin
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 11
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 3cd6U00
3CCRU 3G4SU 3OW2T 1W2BT 3CCMU 1QVFT 1VQ9U 1K73V 1K8AV 1VQPU 1YI2U 1N8RV 1KD1V 3CCVU 3G6EU 1VQ4U 1VQ7U 3CCJU 3CCEU 1QVGT 1KC8V 1YITU 1S72U 1M1KV 2OTLU 2QEXU 3I56U 1VQNU 3CCLU 1Q86V 1VQ6U 3CCSU 1JJ2T 3I55U 1VQ8U 5AN9G 3CMAU 1Q7YV 3CCQU 1K9MV 1VQLU 1YHQU 1Q81V 3CD6U 3CPWT 2OTJU 1YJ9U 1M90V 1Q82V 1VQKU 1VQMU 3CCUU 1KQST 3CMEU 2QA4U 1VQOU 3CC7U 3G71U 1YJNU 1NJIV 1YIJU 3CC4U 1VQ5U 1YJWU 3CXCT 3CC2U
chains in the Genus database with same CATH superfamily
1VQPU 1YI2U 1N8RV 1KC8V 1M1KV 2QEZA 5AN9G 3CCQU 1YHQU 1Q81V 3CPWT 1M90V 3CMEU 3AO0A 3CC4U 1VQ5U 3CXCT 3ABOA 3ANYA 3OW2T 1W2BT 1VQ9U 3ABQA 3CCVU 1VQ4U 2QEXU 3I56U 3CCSU 1VQ8U 5MLCY 1VQKU 1VQMU 3CCUU 1KQST 3G71U 1YJNU 1NJIV 1YIJU 3G4SU 5H1SY 1K73V 3CCEU 3CCLU 1JJ2T 3I55U 1Q7YV 3CMAU 1YJ9U 1VQOU 1JJDA 3CCRU 1QVFT 3CCMU 3ABSA 3J7ZX 1K8AV 1KD1V 3G6EU 1VQ7U 3CCJU 1QVGT 1YITU 1S72U 2OTLU 1VQNU 1Q86V 4UY8X 1VQ6U 1VQLU 3CD6U 1K9MV 5DM6U 2OTJU 3ABRA 1Q82V 2QA4U 3CC7U 2JZ6A 1YJWU 3CC2U
chains in the Genus database with same CATH topology
3CCRU 3G4SU 3OW2T 1W2BT 3CCMU 1QVFT 1VQ9U 1K73V 1K8AV 1VQPU 1YI2U 1N8RV 1KD1V 3CCVU 3G6EU 1VQ4U 1VQ7U 3CCJU 3CCEU 1QVGT 1KC8V 1YITU 1S72U 1M1KV 2OTLU 2QEXU 3I56U 1VQNU 3CCLU 1Q86V 1VQ6U 3CCSU 1JJ2T 3I55U 1VQ8U 5AN9G 3CMAU 1Q7YV 3CCQU 1K9MV 1VQLU 1YHQU 1Q81V 3CD6U 3CPWT 2OTJU 1YJ9U 1M90V 1Q82V 1VQKU 1VQMU 3CCUU 1KQST 3CMEU 2QA4U 1VQOU 3CC7U 3G71U 1YJNU 1NJIV 1YIJU 3CC4U 3CC2U 1VQ5U 1YJWU 3CXCT 1JJDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCR U;  3G4S U;  3OW2 T;  1W2B T;  3CCM U;  1QVF T;  1VQ9 U;  1K73 V;  1K8A V;  1VQP U;  1YI2 U;  1N8R V;  1KD1 V;  3CCV U;  3G6E U;  1VQ4 U;  1VQ7 U;  3CCJ U;  3CCE U;  1QVG T;  1KC8 V;  1YIT U;  1S72 U;  1M1K V;  2OTL U;  2QEX U;  3I56 U;  1VQN U;  3CCL U;  1Q86 V;  1VQ6 U;  3CCS U;  1JJ2 T;  3I55 U;  1VQ8 U;  5AN9 G;  3CMA U;  1Q7Y V;  3CCQ U;  1K9M V;  1VQL U;  1YHQ U;  1Q81 V;  3CD6 U;  3CPW T;  2OTJ U;  1YJ9 U;  1M90 V;  1Q82 V;  1VQK U;  1VQM U;  3CCU U;  1KQS T;  3CME U;  2QA4 U;  1VQO U;  3CC7 U;  3G71 U;  1YJN U;  1NJI V;  1YIJ U;  3CC4 U;  1VQ5 U;  1YJW U;  3CXC T;  3CC2 U; 
#chains in the Genus database with same CATH topology
 1VQP U;  1YI2 U;  1N8R V;  1KC8 V;  1M1K V;  2QEZ A;  5AN9 G;  3CCQ U;  1YHQ U;  1Q81 V;  3CPW T;  1M90 V;  3CME U;  3AO0 A;  3CC4 U;  1VQ5 U;  3CXC T;  3ABO A;  3ANY A;  3OW2 T;  1W2B T;  1VQ9 U;  3ABQ A;  3CCV U;  1VQ4 U;  2QEX U;  3I56 U;  3CCS U;  1VQ8 U;  5MLC Y;  1VQK U;  1VQM U;  3CCU U;  1KQS T;  3G71 U;  1YJN U;  1NJI V;  1YIJ U;  3G4S U;  5H1S Y;  1K73 V;  3CCE U;  3CCL U;  1JJ2 T;  3I55 U;  1Q7Y V;  3CMA U;  1YJ9 U;  1VQO U;  1JJD A;  3CCR U;  1QVF T;  3CCM U;  3ABS A;  3J7Z X;  1K8A V;  1KD1 V;  3G6E U;  1VQ7 U;  3CCJ U;  1QVG T;  1YIT U;  1S72 U;  2OTL U;  1VQN U;  1Q86 V;  4UY8 X;  1VQ6 U;  1VQL U;  3CD6 U;  1K9M V;  5DM6 U;  2OTJ U;  3ABR A;  1Q82 V;  2QA4 U;  3CC7 U;  2JZ6 A;  1YJW U;  3CC2 U; 
#chains in the Genus database with same CATH homology
 3CCR U;  3G4S U;  3OW2 T;  1W2B T;  3CCM U;  1QVF T;  1VQ9 U;  1K73 V;  1K8A V;  1VQP U;  1YI2 U;  1N8R V;  1KD1 V;  3CCV U;  3G6E U;  1VQ4 U;  1VQ7 U;  3CCJ U;  3CCE U;  1QVG T;  1KC8 V;  1YIT U;  1S72 U;  1M1K V;  2OTL U;  2QEX U;  3I56 U;  1VQN U;  3CCL U;  1Q86 V;  1VQ6 U;  3CCS U;  1JJ2 T;  3I55 U;  1VQ8 U;  5AN9 G;  3CMA U;  1Q7Y V;  3CCQ U;  1K9M V;  1VQL U;  1YHQ U;  1Q81 V;  3CD6 U;  3CPW T;  2OTJ U;  1YJ9 U;  1M90 V;  1Q82 V;  1VQK U;  1VQM U;  3CCU U;  1KQS T;  3CME U;  2QA4 U;  1VQO U;  3CC7 U;  3G71 U;  1YJN U;  1NJI V;  1YIJ U;  3CC4 U;  3CC2 U;  1VQ5 U;  1YJW U;  3CXC T;  1JJD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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