3CD6X

Co-cystal of large ribosomal subunit mutant g2616a with cc-puromycin
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
82
structure length
82
Chain Sequence
ERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 18
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01198 Ribosomal_L31e Ribosomal protein L31e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.440.10 Alpha Beta Roll Ribosomal Protein L31e; Chain: W; Ribosomal Protein L31e; Chain: W; 3cd6X00
2OTLX 1M90Y 1VQ8X 3I56X 3G71X 3CMEX 3CPWW 1YJNX 1VQOX 1KD1Y 2OTJX 3CCQX 3CCMX 1M1KY 1VQPX 1VQ4X 1N8RY 1Q81Y 3CC4X 1K73Y 1VQ9X 1Q7YY 1VQMX 1NJIY 1KC8Y 1VQLX 3CMAX 3CCSX 1YI2X 1YJWX 3CCEX 1KQSW 3CCRX 3I55X 3OW2W 3G4SX 1S72X 1YIJX 3CC7X 1W2BW 1QVGW 1VQ7X 1QVFW 1YHQX 1K9MY 3CCJX 1VQ5X 1VQNX 3CCUX 2QEXX 1JJ2W 1K8AY 3CXCW 2QA4X 1VQ6X 1YITX 3G6EX 1Q82Y 1VQKX 3CD6X 3CCLX 3CCVX 1Q86Y 3CC2X 1YJ9X
chains in the Genus database with same CATH superfamily
2OTLX 1M90Y 1VQ8X 3I56X 3G71X 3CMEX 3CPWW 1YJNX 1VQOX 1KD1Y 2OTJX 3CCQX 3CCMX 1M1KY 1VQPX 1VQ4X 1N8RY 1Q81Y 3CC4X 1K73Y 1VQ9X 1Q7YY 1VQMX 1NJIY 1KC8Y 1VQLX 3CMAX 3CCSX 1YI2X 1YJWX 3CCEX 1KQSW 3CCRX 3I55X 3OW2W 3G4SX 1S72X 1YIJX 3CC7X 1W2BW 1QVGW 1VQ7X 1QVFW 1YHQX 1K9MY 3CCJX 1VQ5X 1VQNX 3CCUX 2QEXX 1JJ2W 1K8AY 3CXCW 2QA4X 1VQ6X 1YITX 3G6EX 1Q82Y 1VQKX 3CD6X 3CCLX 3CCVX 1Q86Y 3CC2X 1YJ9X
chains in the Genus database with same CATH topology
2OTLX 1M90Y 1VQ8X 3I56X 3G71X 3CMEX 3CPWW 1YJNX 1VQOX 1KD1Y 2OTJX 3CCQX 3CCMX 1M1KY 1VQPX 1VQ4X 1N8RY 1Q81Y 3CC4X 1K73Y 1VQ9X 1Q7YY 1VQMX 1NJIY 1KC8Y 1VQLX 3CMAX 3CCSX 1YI2X 1YJWX 3CCEX 1KQSW 3CCRX 3I55X 3OW2W 3G4SX 1S72X 1YIJX 3CC7X 1W2BW 1QVGW 1VQ7X 1QVFW 1YHQX 1K9MY 3CCJX 1VQ5X 1VQNX 3CCUX 2QEXX 1JJ2W 1K8AY 3CXCW 2QA4X 1VQ6X 1YITX 3G6EX 1Q82Y 1VQKX 3CD6X 3CCLX 3CCVX 1Q86Y 3CC2X 1YJ9X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OTL X;  1M90 Y;  1VQ8 X;  3I56 X;  3G71 X;  3CME X;  3CPW W;  1YJN X;  1VQO X;  1KD1 Y;  2OTJ X;  3CCQ X;  3CCM X;  1M1K Y;  1VQP X;  1VQ4 X;  1N8R Y;  1Q81 Y;  3CC4 X;  1K73 Y;  1VQ9 X;  1Q7Y Y;  1VQM X;  1NJI Y;  1KC8 Y;  1VQL X;  3CMA X;  3CCS X;  1YI2 X;  1YJW X;  3CCE X;  1KQS W;  3CCR X;  3I55 X;  3OW2 W;  3G4S X;  1S72 X;  1YIJ X;  3CC7 X;  1W2B W;  1QVG W;  1VQ7 X;  1QVF W;  1YHQ X;  1K9M Y;  3CCJ X;  1VQ5 X;  1VQN X;  3CCU X;  2QEX X;  1JJ2 W;  1K8A Y;  3CXC W;  2QA4 X;  1VQ6 X;  1YIT X;  3G6E X;  1Q82 Y;  1VQK X;  3CD6 X;  3CCL X;  3CCV X;  1Q86 Y;  3CC2 X;  1YJ9 X; 
#chains in the Genus database with same CATH topology
 2OTL X;  1M90 Y;  1VQ8 X;  3I56 X;  3G71 X;  3CME X;  3CPW W;  1YJN X;  1VQO X;  1KD1 Y;  2OTJ X;  3CCQ X;  3CCM X;  1M1K Y;  1VQP X;  1VQ4 X;  1N8R Y;  1Q81 Y;  3CC4 X;  1K73 Y;  1VQ9 X;  1Q7Y Y;  1VQM X;  1NJI Y;  1KC8 Y;  1VQL X;  3CMA X;  3CCS X;  1YI2 X;  1YJW X;  3CCE X;  1KQS W;  3CCR X;  3I55 X;  3OW2 W;  3G4S X;  1S72 X;  1YIJ X;  3CC7 X;  1W2B W;  1QVG W;  1VQ7 X;  1QVF W;  1YHQ X;  1K9M Y;  3CCJ X;  1VQ5 X;  1VQN X;  3CCU X;  2QEX X;  1JJ2 W;  1K8A Y;  3CXC W;  2QA4 X;  1VQ6 X;  1YIT X;  3G6E X;  1Q82 Y;  1VQK X;  3CD6 X;  3CCL X;  3CCV X;  1Q86 Y;  3CC2 X;  1YJ9 X; 
#chains in the Genus database with same CATH homology
 2OTL X;  1M90 Y;  1VQ8 X;  3I56 X;  3G71 X;  3CME X;  3CPW W;  1YJN X;  1VQO X;  1KD1 Y;  2OTJ X;  3CCQ X;  3CCM X;  1M1K Y;  1VQP X;  1VQ4 X;  1N8R Y;  1Q81 Y;  3CC4 X;  1K73 Y;  1VQ9 X;  1Q7Y Y;  1VQM X;  1NJI Y;  1KC8 Y;  1VQL X;  3CMA X;  3CCS X;  1YI2 X;  1YJW X;  3CCE X;  1KQS W;  3CCR X;  3I55 X;  3OW2 W;  3G4S X;  1S72 X;  1YIJ X;  3CC7 X;  1W2B W;  1QVG W;  1VQ7 X;  1QVF W;  1YHQ X;  1K9M Y;  3CCJ X;  1VQ5 X;  1VQN X;  3CCU X;  2QEX X;  1JJ2 W;  1K8A Y;  3CXC W;  2QA4 X;  1VQ6 X;  1YIT X;  3G6E X;  1Q82 Y;  1VQK X;  3CD6 X;  3CCL X;  3CCV X;  1Q86 Y;  3CC2 X;  1YJ9 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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