3CWTA

Crystal structure of an alka host/guest complex 2'-fluoro-2'-deoxyinosine:adenine base pair
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
282
structure length
282
Chain Sequence
MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA-3-methyladenine glycosylase 2
publication title Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA.
pubmed doi rcsb
source organism Escherichia coli
total genus 88
structure length 282
sequence length 282
chains with identical sequence B, C, D
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 2008-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF06029 AlkA_N AlkA N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 3cwtA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 3cwtA03
3.30.310.20 Alpha Beta 2-Layer Sandwich TATA-Binding Protein DNA-3-methyladenine glycosylase AlkA, N-terminal domain 3cwtA01
3FHFA 1M3HA 1M3QA 1P59A 4OFEA 1EBMA 1VRLA 3S6IA 1KG6A 3CVTA 4B23A 2JHJA 3F10A 4OFAA 1KG3A 4B24A 1KEAA 1KG5A 1KQJA 3F0ZA 4PIIA 4EW0A 2NOLA 4E9HA 4AIAA 2NOIA 3CWTA 3KTUA 1KO9A 1YQMA 4UNFA 3N5NX 1MUNA 4EA4A 4YPRA 2ABKA 3OGDA 5CHZA 2NOHA 1N3AA 4B22A 1XQPA 3IH7A 1XG7A 1KG4A 3OH9A 4EVVA 2OFIA 3D4VA 1LWWA 1XQOA 1P7MA 3I0XA 4E9GA 1ORPA 1N39A 1PU7A 4OFHA 3OH6A 1LMZA 4YOQA 1PU8A 2H56A 5KN8A 3CWSA 3CWAA 4AI4A 5DPKA 1YQRA 1FN7A 2JG6A 3IHOA 3N0UA 3I0WA 3CVSA 1PU6A 3CW7A 3CWUA 2JHNA 1MUDA 2OFKA 1NKUA 1PVSA 1HU0A 2YG8A 4EW4A 5AN4A 3FHGA 1DIZA 1WEGA 4B21A 1RRSA 1N3CA 4HSBA 4EJYA 3FSPA 4E9FA 1MUYA 4UOBA 1KG2A 2I5WA 1LWYA 1NGNA 1YQLA 1WEIA 1ORNA 1MPGA 4EA5A 2NOBA 2YG9A 4EJZA 1YQKA 1RRQA 2NOZA 4YPHA 3G0QA 5KN9A 2XHIA 2NOFA 4E9EA 1KG7A 4AI5A 4DK9A 1LWVA 2NOEA 1WEFA 3KNTA
chains in the Genus database with same CATH superfamily
4EAIA 1M3HA 2QRDA 1EBMA 3OLPA 5HSHA 4D7QA 1QTPA 3OYKA 4E7HA 4B24A 1PCMX 1KEAA 1KQJA 4EW0A 4AIAA 3RSMA 2FKMX 3L2UA 1UT4A 4Q11A 1C47A 1YTFA 3OYLA 5KL0A 3IH7A 4C7PA 1VOKA 1XG7A 1KG4A 4EVVA 2OFIA 3DPUA 1NGMA 1ORPA 3UW2A 2D0AA 2QREA 5JN5A 4AI4A 3CWAA 1WJWA 2JG6A 3IHOA 2MZ8A 3I0WA 3CVSA 1PU6A 3OYAA 4EAJA 3CW7A 2QR1A 2FUVA 2OFKA 3OYEA 4BDZA 1NKUA 3RPJA 5BMNA 1QN4A 1DIZA 3N89A 1TBAB 1P5DX 5IYBP 1WEGA 2JPSA 1RRSA 1K2YX 4IL8A 2HKPA 1YQLA 2IV9A 4TPSA 2HZSA 1MP9A 1QN3A 3HS9A 1WEIA 1ORNA 1Q9UA 5IYDP 2YG9A 2QLVA 2V8QA 2NVMA 2NOZA 3G0QA 5KN9A 3ULXA 2NOFA 1JFIC 1E42A 5F9CA 4QG5A 1LWVA 1WEFA 3KNTA 1D3UA 1R4XA 1B9KA 2NLVA 4E7JA 2JHJA 3OS0A 3VN5A 3NNQA 2D0CA 3OY9A 2W03A 1TGHA 2F7LA 5FRNA 1QN7A 3OYBA 3OYFA 2H4LX 2OOXA 4ROEB 5EPCA 1EUVA 4UNFA 3N5NX 1UL7A 5IYCP 3TDHA 4YPRA 2ABKA 2D0BA 2V92A 3OYMA 3OGDA 3KRMA 4WZSD 1N3AA 1NVPA 1RM1A 1QNCA 2YA3A 3OH9A 1P7MA 3I0XA 1LMZA 4EALA 4I8OA 4E7LA 1PU8A 3ENCA 2V9JA 1FN7A 1YQRA 4E7KA 3N0UA 1KY7A 4WXAA 1V5SA 3SNSA 3FHGA 4B21A 1QN6A 4HSBA 4E9FA 2I5WA 1K35A 1MPGA 4EA5A 4ZTFA 3OCIA 4EJZA 1YQKA 1U84A 4CFFA 3L2WA 1RRQA 4YPHA 2FGTA 1WQAA 3OYNA 2QRCA 3FHFA 2Z0FA 2HL8A 1P59A 5BMPA 1UT7A 1LXTA 4MRQA 4BDYA 1KG3A 1KG5A 3OYDA 4PIIA 2LAEA 4B0AA 3PDKA 2DKCA 3CWTA 2Y8QA 4PY5A 3KTUA 1KO9A 1QNBA 1MUNA 1AISA 5JMVD 3R2XC 2V75A 3OYHA 1QN9A 2NOHA 1KFIA 3ENOC 3H1ZA 4EAGA 1QN5A 3OYIA 1C9BB 1XQOA 3L2VA 4E9GA 1N39A 1PU7A 3D7QA 3OS2A 1VTOA 2H56A 2HZMA 3L2RA 5DPKA 1TBPA 1C4GA 3S3OA 4DULA 3OSMA 2G30A 4E7IA 1XSZA 4IKFA 2IV8A 3CWUA 1KYUA 2JHNA 1MUDA 3TE5A 1PVSA 1HU0A 3OYGA 3ASMA 2Y8LA 4EJYA 3BKQX 3FSPA 3EAYA 4UOBA 4BE1A 3VW4A 1KG2A 1NGNA 4ROCB 1W80A 5FRMA 3HS8A 4BACA 4WX8A 3T4NA 1VKLA 2XHIA 3I3WA 4ZTJA 4DK9A 2NOEA 1J3MA 3OYCA 1YTBA 1M3QA 4OFEA 4BE0A 3DPTA 1VRLA 3S6IA 2JPIA 1KG6A 1KYFA 3CVTA 2OOYA 1CDWA 4EAKA 4B23A 1NH2A 3F10A 2H5AX 3OC3C 4OFAA 1JDYA 1TUOA 2PWWA 3F0ZA 2NOLA 2R5XA 4E9HA 3OYJA 2NOIA 1YQMA 2ZFDB 2JOIA 4EA4A 1T6AA 3C04A 2EHBD 5CHZA 4BE2A 1QN8A 2YH5A 4B22A 1XQPA 3D4VA 1LWWA 4BJUA 4OFHA 3OH6A 2DKDA 4YOQA 2Z8UA 1KFQA 1P5GX 2FKFA 5KN8A 2NWVA 3CWSA 1VTLE 2HL9A 1PCZA 3OSTA 3NA5A 3S3NA 1QNAA 2VJ0A 2YG8A 1QTSA 4EW4A 5AN4A 3LCNA 1N3CA 2MJ7A 4HJHA 1MUYA 4D7RA 3OS1A 2W04A 1LWYA 5FROA 1PZDA 2O3OA 2NOBA 1KY6A 3L2QA 1VOLB 4RODB 1QNEA 1M5Q1 4E9EA 3PMGA 1KG7A 3EIKA 3S3MA 4AI5A 4NZGA 1KYDA 3OSEA 1PCJX 2DKAA
chains in the Genus database with same CATH topology
3FHFA 1M3HA 1M3QA 1P59A 4OFEA 1EBMA 1VRLA 3S6IA 1KG6A 3CVTA 4B23A 2JHJA 3F10A 4OFAA 1KG3A 4B24A 1KEAA 1KG5A 1KQJA 3F0ZA 4PIIA 4EW0A 2NOLA 4E9HA 4AIAA 2NOIA 3CWTA 3KTUA 1KO9A 1YQMA 4UNFA 3N5NX 1MUNA 4EA4A 4YPRA 2ABKA 3OGDA 5CHZA 2NOHA 1N3AA 4B22A 1XQPA 3IH7A 1XG7A 1KG4A 3OH9A 4EVVA 2OFIA 3D4VA 1LWWA 1XQOA 1P7MA 3I0XA 4E9GA 1ORPA 1N39A 1PU7A 4OFHA 3OH6A 1LMZA 4YOQA 1PU8A 2H56A 5KN8A 3CWSA 3CWAA 4AI4A 5DPKA 1YQRA 1FN7A 2JG6A 3IHOA 3N0UA 3I0WA 3CVSA 1PU6A 3CW7A 3CWUA 2JHNA 1MUDA 2OFKA 1NKUA 1PVSA 1HU0A 2YG8A 4EW4A 5AN4A 3FHGA 1DIZA 1WEGA 4B21A 1RRSA 1N3CA 4HSBA 4EJYA 3FSPA 4E9FA 1MUYA 4UOBA 1KG2A 2I5WA 1LWYA 1NGNA 1YQLA 1WEIA 1ORNA 1MPGA 4EA5A 2NOBA 2YG9A 4EJZA 1YQKA 1RRQA 2NOZA 4YPHA 3G0QA 5KN9A 2XHIA 2NOFA 4E9EA 1KG7A 4AI5A 4DK9A 1LWVA 2NOEA 1WEFA 3KNTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FHF A;  1M3H A;  1M3Q A;  1P59 A;  4OFE A;  1EBM A;  1VRL A;  3S6I A;  1KG6 A;  3CVT A;  4B23 A;  2JHJ A;  3F10 A;  4OFA A;  1KG3 A;  4B24 A;  1KEA A;  1KG5 A;  1KQJ A;  3F0Z A;  4PII A;  4EW0 A;  2NOL A;  4E9H A;  4AIA A;  2NOI A;  3CWT A;  3KTU A;  1KO9 A;  1YQM A;  4UNF A;  3N5N X;  1MUN A;  4EA4 A;  4YPR A;  2ABK A;  3OGD A;  5CHZ A;  2NOH A;  1N3A A;  4B22 A;  1XQP A;  3IH7 A;  1XG7 A;  1KG4 A;  3OH9 A;  4EVV A;  2OFI A;  3D4V A;  1LWW A;  1XQO A;  1P7M A;  3I0X A;  4E9G A;  1ORP A;  1N39 A;  1PU7 A;  4OFH A;  3OH6 A;  1LMZ A;  4YOQ A;  1PU8 A;  2H56 A;  5KN8 A;  3CWS A;  3CWA A;  4AI4 A;  5DPK A;  1YQR A;  1FN7 A;  2JG6 A;  3IHO A;  3N0U A;  3I0W A;  3CVS A;  1PU6 A;  3CW7 A;  3CWU A;  2JHN A;  1MUD A;  2OFK A;  1NKU A;  1PVS A;  1HU0 A;  2YG8 A;  4EW4 A;  5AN4 A;  3FHG A;  1DIZ A;  1WEG A;  4B21 A;  1RRS A;  1N3C A;  4HSB A;  4EJY A;  3FSP A;  4E9F A;  1MUY A;  4UOB A;  1KG2 A;  2I5W A;  1LWY A;  1NGN A;  1YQL A;  1WEI A;  1ORN A;  1MPG A;  4EA5 A;  2NOB A;  2YG9 A;  4EJZ A;  1YQK A;  1RRQ A;  2NOZ A;  4YPH A;  3G0Q A;  5KN9 A;  2XHI A;  2NOF A;  4E9E A;  1KG7 A;  4AI5 A;  4DK9 A;  1LWV A;  2NOE A;  1WEF A;  3KNT A; 
#chains in the Genus database with same CATH topology
 4EAI A;  1M3H A;  2QRD A;  1EBM A;  3OLP A;  5HSH A;  4D7Q A;  1QTP A;  3OYK A;  4E7H A;  4B24 A;  1PCM X;  1KEA A;  1KQJ A;  4EW0 A;  4AIA A;  3RSM A;  2FKM X;  3L2U A;  1UT4 A;  4Q11 A;  1C47 A;  1YTF A;  3OYL A;  5KL0 A;  3IH7 A;  4C7P A;  1VOK A;  1XG7 A;  1KG4 A;  4EVV A;  2OFI A;  3DPU A;  1NGM A;  1ORP A;  3UW2 A;  2D0A A;  2QRE A;  5JN5 A;  4AI4 A;  3CWA A;  1WJW A;  2JG6 A;  3IHO A;  2MZ8 A;  3I0W A;  3CVS A;  1PU6 A;  3OYA A;  4EAJ A;  3CW7 A;  2QR1 A;  2FUV A;  2OFK A;  3OYE A;  4BDZ A;  1NKU A;  3RPJ A;  5BMN A;  1QN4 A;  1DIZ A;  3N89 A;  1TBA B;  1P5D X;  5IYB P;  1WEG A;  2JPS A;  1RRS A;  1K2Y X;  4IL8 A;  2HKP A;  1YQL A;  2IV9 A;  4TPS A;  2HZS A;  1MP9 A;  1QN3 A;  3HS9 A;  1WEI A;  1ORN A;  1Q9U A;  5IYD P;  2YG9 A;  2QLV A;  2V8Q A;  2NVM A;  2NOZ A;  3G0Q A;  5KN9 A;  3ULX A;  2NOF A;  1JFI C;  1E42 A;  5F9C A;  4QG5 A;  1LWV A;  1WEF A;  3KNT A;  1D3U A;  1R4X A;  1B9K A;  2NLV A;  4E7J A;  2JHJ A;  3OS0 A;  3VN5 A;  3NNQ A;  2D0C A;  3OY9 A;  2W03 A;  1TGH A;  2F7L A;  5FRN A;  1QN7 A;  3OYB A;  3OYF A;  2H4L X;  2OOX A;  4ROE B;  5EPC A;  1EUV A;  4UNF A;  3N5N X;  1UL7 A;  5IYC P;  3TDH A;  4YPR A;  2ABK A;  2D0B A;  2V92 A;  3OYM A;  3OGD A;  3KRM A;  4WZS D;  1N3A A;  1NVP A;  1RM1 A;  1QNC A;  2YA3 A;  3OH9 A;  1P7M A;  3I0X A;  1LMZ A;  4EAL A;  4I8O A;  4E7L A;  1PU8 A;  3ENC A;  2V9J A;  1FN7 A;  1YQR A;  4E7K A;  3N0U A;  1KY7 A;  4WXA A;  1V5S A;  3SNS A;  3FHG A;  4B21 A;  1QN6 A;  4HSB A;  4E9F A;  2I5W A;  1K35 A;  1MPG A;  4EA5 A;  4ZTF A;  3OCI A;  4EJZ A;  1YQK A;  1U84 A;  4CFF A;  3L2W A;  1RRQ A;  4YPH A;  2FGT A;  1WQA A;  3OYN A;  2QRC A;  3FHF A;  2Z0F A;  2HL8 A;  1P59 A;  5BMP A;  1UT7 A;  1LXT A;  4MRQ A;  4BDY A;  1KG3 A;  1KG5 A;  3OYD A;  4PII A;  2LAE A;  4B0A A;  3PDK A;  2DKC A;  3CWT A;  2Y8Q A;  4PY5 A;  3KTU A;  1KO9 A;  1QNB A;  1MUN A;  1AIS A;  5JMV D;  3R2X C;  2V75 A;  3OYH A;  1QN9 A;  2NOH A;  1KFI A;  3ENO C;  3H1Z A;  4EAG A;  1QN5 A;  3OYI A;  1C9B B;  1XQO A;  3L2V A;  4E9G A;  1N39 A;  1PU7 A;  3D7Q A;  3OS2 A;  1VTO A;  2H56 A;  2HZM A;  3L2R A;  5DPK A;  1TBP A;  1C4G A;  3S3O A;  4DUL A;  3OSM A;  2G30 A;  4E7I A;  1XSZ A;  4IKF A;  2IV8 A;  3CWU A;  1KYU A;  2JHN A;  1MUD A;  3TE5 A;  1PVS A;  1HU0 A;  3OYG A;  3ASM A;  2Y8L A;  4EJY A;  3BKQ X;  3FSP A;  3EAY A;  4UOB A;  4BE1 A;  3VW4 A;  1KG2 A;  1NGN A;  4ROC B;  1W80 A;  5FRM A;  3HS8 A;  4BAC A;  4WX8 A;  3T4N A;  1VKL A;  2XHI A;  3I3W A;  4ZTJ A;  4DK9 A;  2NOE A;  1J3M A;  3OYC A;  1YTB A;  1M3Q A;  4OFE A;  4BE0 A;  3DPT A;  1VRL A;  3S6I A;  2JPI A;  1KG6 A;  1KYF A;  3CVT A;  2OOY A;  1CDW A;  4EAK A;  4B23 A;  1NH2 A;  3F10 A;  2H5A X;  3OC3 C;  4OFA A;  1JDY A;  1TUO A;  2PWW A;  3F0Z A;  2NOL A;  2R5X A;  4E9H A;  3OYJ A;  2NOI A;  1YQM A;  2ZFD B;  2JOI A;  4EA4 A;  1T6A A;  3C04 A;  2EHB D;  5CHZ A;  4BE2 A;  1QN8 A;  2YH5 A;  4B22 A;  1XQP A;  3D4V A;  1LWW A;  4BJU A;  4OFH A;  3OH6 A;  2DKD A;  4YOQ A;  2Z8U A;  1KFQ A;  1P5G X;  2FKF A;  5KN8 A;  2NWV A;  3CWS A;  1VTL E;  2HL9 A;  1PCZ A;  3OST A;  3NA5 A;  3S3N A;  1QNA A;  2VJ0 A;  2YG8 A;  1QTS A;  4EW4 A;  5AN4 A;  3LCN A;  1N3C A;  2MJ7 A;  4HJH A;  1MUY A;  4D7R A;  3OS1 A;  2W04 A;  1LWY A;  5FRO A;  1PZD A;  2O3O A;  2NOB A;  1KY6 A;  3L2Q A;  1VOL B;  4ROD B;  1QNE A;  1M5Q 1;  4E9E A;  3PMG A;  1KG7 A;  3EIK A;  3S3M A;  4AI5 A;  4NZG A;  1KYD A;  3OSE A;  1PCJ X;  2DKA A; 
#chains in the Genus database with same CATH homology
 3FHF A;  1M3H A;  1M3Q A;  1P59 A;  4OFE A;  1EBM A;  1VRL A;  3S6I A;  1KG6 A;  3CVT A;  4B23 A;  2JHJ A;  3F10 A;  4OFA A;  1KG3 A;  4B24 A;  1KEA A;  1KG5 A;  1KQJ A;  3F0Z A;  4PII A;  4EW0 A;  2NOL A;  4E9H A;  4AIA A;  2NOI A;  3CWT A;  3KTU A;  1KO9 A;  1YQM A;  4UNF A;  3N5N X;  1MUN A;  4EA4 A;  4YPR A;  2ABK A;  3OGD A;  5CHZ A;  2NOH A;  1N3A A;  4B22 A;  1XQP A;  3IH7 A;  1XG7 A;  1KG4 A;  3OH9 A;  4EVV A;  2OFI A;  3D4V A;  1LWW A;  1XQO A;  1P7M A;  3I0X A;  4E9G A;  1ORP A;  1N39 A;  1PU7 A;  4OFH A;  3OH6 A;  1LMZ A;  4YOQ A;  1PU8 A;  2H56 A;  5KN8 A;  3CWS A;  3CWA A;  4AI4 A;  5DPK A;  1YQR A;  1FN7 A;  2JG6 A;  3IHO A;  3N0U A;  3I0W A;  3CVS A;  1PU6 A;  3CW7 A;  3CWU A;  2JHN A;  1MUD A;  2OFK A;  1NKU A;  1PVS A;  1HU0 A;  2YG8 A;  4EW4 A;  5AN4 A;  3FHG A;  1DIZ A;  1WEG A;  4B21 A;  1RRS A;  1N3C A;  4HSB A;  4EJY A;  3FSP A;  4E9F A;  1MUY A;  4UOB A;  1KG2 A;  2I5W A;  1LWY A;  1NGN A;  1YQL A;  1WEI A;  1ORN A;  1MPG A;  4EA5 A;  2NOB A;  2YG9 A;  4EJZ A;  1YQK A;  1RRQ A;  2NOZ A;  4YPH A;  3G0Q A;  5KN9 A;  2XHI A;  2NOF A;  4E9E A;  1KG7 A;  4AI5 A;  4DK9 A;  1LWV A;  2NOE A;  1WEF A;  3KNT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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