3D27A

E. coli methionine aminopeptidase with fe inhibitor w29
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
261
structure length
261
Chain Sequence
SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Methionine aminopeptidase
publication title Discovery of inhibitors of Escherichia coli methionine aminopeptidase with the Fe(II)-form selectivity and antibacterial activity.
pubmed doi rcsb
source organism Escherichia coli
total genus 83
structure length 261
sequence length 261
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3d27A00
2B3KA 2ZSGA 4U75A 2BWTA 5CDLA 1C21A 4IPAA 3D27A 1B6AA 2B3HA 5D6FA 1XGOA 2EA4A 3TB5A 4FKCA 4IECA 2BWYA 4FLJA 3BIPA 1WY2A 4IF7A 1W7VA 1WLRA 4ZNGA 1R5HA 2BHDA 1WBQA 1WKMA 4HXXA 5CE6A 3RORA 3CTZA 2P9AA 3PKAA 3CB6A 3L24A 4KM3A 5JI6A 4EGEA 1B59A 2ADUA 3IU8A 2GZ5A 4FO8A 2BB7A 4FLIA 2G6PA 4A6VA 1YW8A 4PNCA 1C23A 2GU7A 4S2RP 1BN5A 2V3YA 4MATA 4PV4A 3L7GA 3RVAA 2BWWA 1M35A 1CHMA 5CIKA 2GG7A 2BWXA 1QXYA 5D6EA 2GG5A 3TAVA 4IKRA 1O0XA 2GU5A 2BHBA 3Q6DA 4IKTA 4S01A 2EVMA 1QXZA 1YVMA 4A6WA 2OAZA 2GG0A 5CNXA 4U6JA 1QXWA 4IDYA 2V3XA 3S6BA 4FUKA 4FO7A 3FMQA 2IW2A 1XGNA 4U6EA 2B3LA 4Z7MA 2P98A 1YW9A 4IKSA 3IU7A 4QR8A 4OOKA 2V6CA 4RGZ1 5JHUA 2BHAA 3MX6A 3IG4A 2BWUA 2Q93A 4R60A 4RZZA 4U69A 2GU6A 3BITA 1YW7A 1N51A 1YJ3A 1MATA 4FLKA 1KQ9A 2BN7A 2BHCA 3PKBA 2GTXA 5CLSA 1KP0A 1Y1NA 3IU9A 1QZYA 2GU4A 3FMRA 2GG9A 2BH3A 3PKCA 2Q92A 4IU6A 2EVOA 4RZYA 4U6ZA 4IKUA 2DFIA 4U71A 1JAWA 4B28A 1A16A 4U76A 4ZWOA 3PKEA 3PKDA 4U73A 4ZWPA 4S00A 1R5GA 2Q96A 4JUQA 1C22A 4U6WA 1XNZA 2MATA 4U6CA 5FCFA 1XGSA 4U1BA 2Q94A 1KQ0A 3FM3A 1C24A 5JFRA 2GA2A 2GGBA 2Q95A 2GG3A 5CDVA 4FLLA 1BOAA 1XGMA 1WL6A 3MATA 4U70A 1WN1A 1C27A 2OKNA 2NQ7A 2BWSA 5FCHA 1R58A 2EA2A 5CDEA 4ZWUA 3CB5A 1W2MA 2BWVA 2P99A 2V3ZA 1PV9A 2GG8A 3BIQA 2Q8KA 2GG2A 2GGCA 2EVCA 3MR1A 2NQ6A 1WL9A 4S2TP 5E5BA 2HOWA
chains in the Genus database with same CATH superfamily
2B3KA 2ZSGA 4U75A 2BWTA 5CDLA 1C21A 4IPAA 3D27A 1B6AA 2B3HA 5D6FA 1XGOA 2EA4A 3TB5A 4FKCA 4IECA 2BWYA 4FLJA 3BIPA 1WY2A 4IF7A 1W7VA 1WLRA 4ZNGA 1R5HA 2BHDA 1WBQA 1WKMA 4HXXA 5CE6A 3RORA 3CTZA 2P9AA 3PKAA 3CB6A 3L24A 4KM3A 5JI6A 4EGEA 1B59A 2ADUA 3IU8A 2GZ5A 4FO8A 2BB7A 4FLIA 2G6PA 4A6VA 1YW8A 4PNCA 1C23A 2GU7A 4S2RP 1BN5A 2V3YA 4MATA 4PV4A 3L7GA 3RVAA 2BWWA 1M35A 1CHMA 5CIKA 2GG7A 2BWXA 1QXYA 5D6EA 2GG5A 3TAVA 4IKRA 1O0XA 2GU5A 2BHBA 3Q6DA 4IKTA 4S01A 2EVMA 1QXZA 1YVMA 4A6WA 2OAZA 2GG0A 5CNXA 4U6JA 1QXWA 4IDYA 2V3XA 3S6BA 4FUKA 4FO7A 3FMQA 2IW2A 1XGNA 4U6EA 2B3LA 4Z7MA 2P98A 1YW9A 4IKSA 3IU7A 4QR8A 4OOKA 2V6CA 4RGZ1 5JHUA 2BHAA 3MX6A 3IG4A 2BWUA 2Q93A 4R60A 4RZZA 4U69A 2GU6A 3BITA 1YW7A 1N51A 1YJ3A 1MATA 4FLKA 1KQ9A 2BN7A 2BHCA 3PKBA 2GTXA 5CLSA 1KP0A 1Y1NA 3IU9A 1QZYA 2GU4A 3FMRA 2GG9A 2BH3A 3PKCA 2Q92A 4IU6A 2EVOA 4RZYA 4U6ZA 4IKUA 2DFIA 4U71A 1JAWA 4B28A 1A16A 4U76A 4ZWOA 3PKEA 3PKDA 4U73A 4ZWPA 4S00A 1R5GA 2Q96A 4JUQA 1C22A 4U6WA 1XNZA 2MATA 4U6CA 5FCFA 1XGSA 4U1BA 2Q94A 1KQ0A 3FM3A 1C24A 5JFRA 2GA2A 2GGBA 2Q95A 2GG3A 5CDVA 4FLLA 1BOAA 1XGMA 1WL6A 3MATA 4U70A 1WN1A 1C27A 2OKNA 2NQ7A 2BWSA 5FCHA 1R58A 2EA2A 5CDEA 4ZWUA 3CB5A 1W2MA 2BWVA 2P99A 2V3ZA 1PV9A 2GG8A 3BIQA 2Q8KA 2GG2A 2GGCA 2EVCA 3MR1A 2NQ6A 1WL9A 4S2TP 5E5BA 2HOWA
chains in the Genus database with same CATH topology
2B3KA 2ZSGA 4U75A 2BWTA 5CDLA 1C21A 4IPAA 3D27A 1B6AA 2B3HA 5D6FA 1XGOA 2EA4A 3TB5A 4FKCA 4IECA 2BWYA 4FLJA 3BIPA 1WY2A 4IF7A 1W7VA 1WLRA 4ZNGA 1R5HA 2BHDA 1WBQA 1WKMA 4HXXA 5CE6A 3RORA 3CTZA 2P9AA 3PKAA 3CB6A 3L24A 4KM3A 5JI6A 4EGEA 1B59A 2ADUA 3IU8A 2GZ5A 4FO8A 2BB7A 4FLIA 2G6PA 4A6VA 1YW8A 4PNCA 1C23A 2GU7A 4S2RP 1BN5A 2V3YA 4MATA 4PV4A 3L7GA 3RVAA 2BWWA 1M35A 1CHMA 5CIKA 2GG7A 2BWXA 1QXYA 5D6EA 2GG5A 3TAVA 4IKRA 1O0XA 2GU5A 2BHBA 3Q6DA 4IKTA 4S01A 2EVMA 1QXZA 1YVMA 4A6WA 2OAZA 2GG0A 5CNXA 4U6JA 1QXWA 4IDYA 2V3XA 3S6BA 4FUKA 4FO7A 3FMQA 2IW2A 1XGNA 4U6EA 2B3LA 4Z7MA 2P98A 1YW9A 4IKSA 3IU7A 4QR8A 4OOKA 2V6CA 4RGZ1 5JHUA 2BHAA 3MX6A 3IG4A 2BWUA 2Q93A 4R60A 4RZZA 4U69A 2GU6A 3BITA 1YW7A 1N51A 1YJ3A 1MATA 4FLKA 1KQ9A 2BN7A 2BHCA 3PKBA 2GTXA 5CLSA 1KP0A 1Y1NA 3IU9A 1QZYA 2GU4A 3FMRA 2GG9A 2BH3A 3PKCA 2Q92A 4IU6A 2EVOA 4RZYA 4U6ZA 4IKUA 2DFIA 4U71A 1JAWA 4B28A 1A16A 4U76A 4ZWOA 3PKEA 3PKDA 4U73A 4ZWPA 4S00A 1R5GA 2Q96A 4JUQA 1C22A 4U6WA 1XNZA 2MATA 4U6CA 5FCFA 1XGSA 4U1BA 2Q94A 1KQ0A 3FM3A 1C24A 5JFRA 2GA2A 2GGBA 2Q95A 2GG3A 5CDVA 4FLLA 1BOAA 1XGMA 1WL6A 3MATA 4U70A 1WN1A 1C27A 2OKNA 2NQ7A 2BWSA 5FCHA 1R58A 2EA2A 5CDEA 4ZWUA 3CB5A 1W2MA 2BWVA 2P99A 2V3ZA 1PV9A 2GG8A 3BIQA 2Q8KA 2GG2A 2GGCA 2EVCA 3MR1A 2NQ6A 1WL9A 4S2TP 5E5BA 2HOWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B3K A;  2ZSG A;  4U75 A;  2BWT A;  5CDL A;  1C21 A;  4IPA A;  3D27 A;  1B6A A;  2B3H A;  5D6F A;  1XGO A;  2EA4 A;  3TB5 A;  4FKC A;  4IEC A;  2BWY A;  4FLJ A;  3BIP A;  1WY2 A;  4IF7 A;  1W7V A;  1WLR A;  4ZNG A;  1R5H A;  2BHD A;  1WBQ A;  1WKM A;  4HXX A;  5CE6 A;  3ROR A;  3CTZ A;  2P9A A;  3PKA A;  3CB6 A;  3L24 A;  4KM3 A;  5JI6 A;  4EGE A;  1B59 A;  2ADU A;  3IU8 A;  2GZ5 A;  4FO8 A;  2BB7 A;  4FLI A;  2G6P A;  4A6V A;  1YW8 A;  4PNC A;  1C23 A;  2GU7 A;  4S2R P;  1BN5 A;  2V3Y A;  4MAT A;  4PV4 A;  3L7G A;  3RVA A;  2BWW A;  1M35 A;  1CHM A;  5CIK A;  2GG7 A;  2BWX A;  1QXY A;  5D6E A;  2GG5 A;  3TAV A;  4IKR A;  1O0X A;  2GU5 A;  2BHB A;  3Q6D A;  4IKT A;  4S01 A;  2EVM A;  1QXZ A;  1YVM A;  4A6W A;  2OAZ A;  2GG0 A;  5CNX A;  4U6J A;  1QXW A;  4IDY A;  2V3X A;  3S6B A;  4FUK A;  4FO7 A;  3FMQ A;  2IW2 A;  1XGN A;  4U6E A;  2B3L A;  4Z7M A;  2P98 A;  1YW9 A;  4IKS A;  3IU7 A;  4QR8 A;  4OOK A;  2V6C A;  4RGZ 1;  5JHU A;  2BHA A;  3MX6 A;  3IG4 A;  2BWU A;  2Q93 A;  4R60 A;  4RZZ A;  4U69 A;  2GU6 A;  3BIT A;  1YW7 A;  1N51 A;  1YJ3 A;  1MAT A;  4FLK A;  1KQ9 A;  2BN7 A;  2BHC A;  3PKB A;  2GTX A;  5CLS A;  1KP0 A;  1Y1N A;  3IU9 A;  1QZY A;  2GU4 A;  3FMR A;  2GG9 A;  2BH3 A;  3PKC A;  2Q92 A;  4IU6 A;  2EVO A;  4RZY A;  4U6Z A;  4IKU A;  2DFI A;  4U71 A;  1JAW A;  4B28 A;  1A16 A;  4U76 A;  4ZWO A;  3PKE A;  3PKD A;  4U73 A;  4ZWP A;  4S00 A;  1R5G A;  2Q96 A;  4JUQ A;  1C22 A;  4U6W A;  1XNZ A;  2MAT A;  4U6C A;  5FCF A;  1XGS A;  4U1B A;  2Q94 A;  1KQ0 A;  3FM3 A;  1C24 A;  5JFR A;  2GA2 A;  2GGB A;  2Q95 A;  2GG3 A;  5CDV A;  4FLL A;  1BOA A;  1XGM A;  1WL6 A;  3MAT A;  4U70 A;  1WN1 A;  1C27 A;  2OKN A;  2NQ7 A;  2BWS A;  5FCH A;  1R58 A;  2EA2 A;  5CDE A;  4ZWU A;  3CB5 A;  1W2M A;  2BWV A;  2P99 A;  2V3Z A;  1PV9 A;  2GG8 A;  3BIQ A;  2Q8K A;  2GG2 A;  2GGC A;  2EVC A;  3MR1 A;  2NQ6 A;  1WL9 A;  4S2T P;  5E5B A;  2HOW A; 
#chains in the Genus database with same CATH topology
 2B3K A;  2ZSG A;  4U75 A;  2BWT A;  5CDL A;  1C21 A;  4IPA A;  3D27 A;  1B6A A;  2B3H A;  5D6F A;  1XGO A;  2EA4 A;  3TB5 A;  4FKC A;  4IEC A;  2BWY A;  4FLJ A;  3BIP A;  1WY2 A;  4IF7 A;  1W7V A;  1WLR A;  4ZNG A;  1R5H A;  2BHD A;  1WBQ A;  1WKM A;  4HXX A;  5CE6 A;  3ROR A;  3CTZ A;  2P9A A;  3PKA A;  3CB6 A;  3L24 A;  4KM3 A;  5JI6 A;  4EGE A;  1B59 A;  2ADU A;  3IU8 A;  2GZ5 A;  4FO8 A;  2BB7 A;  4FLI A;  2G6P A;  4A6V A;  1YW8 A;  4PNC A;  1C23 A;  2GU7 A;  4S2R P;  1BN5 A;  2V3Y A;  4MAT A;  4PV4 A;  3L7G A;  3RVA A;  2BWW A;  1M35 A;  1CHM A;  5CIK A;  2GG7 A;  2BWX A;  1QXY A;  5D6E A;  2GG5 A;  3TAV A;  4IKR A;  1O0X A;  2GU5 A;  2BHB A;  3Q6D A;  4IKT A;  4S01 A;  2EVM A;  1QXZ A;  1YVM A;  4A6W A;  2OAZ A;  2GG0 A;  5CNX A;  4U6J A;  1QXW A;  4IDY A;  2V3X A;  3S6B A;  4FUK A;  4FO7 A;  3FMQ A;  2IW2 A;  1XGN A;  4U6E A;  2B3L A;  4Z7M A;  2P98 A;  1YW9 A;  4IKS A;  3IU7 A;  4QR8 A;  4OOK A;  2V6C A;  4RGZ 1;  5JHU A;  2BHA A;  3MX6 A;  3IG4 A;  2BWU A;  2Q93 A;  4R60 A;  4RZZ A;  4U69 A;  2GU6 A;  3BIT A;  1YW7 A;  1N51 A;  1YJ3 A;  1MAT A;  4FLK A;  1KQ9 A;  2BN7 A;  2BHC A;  3PKB A;  2GTX A;  5CLS A;  1KP0 A;  1Y1N A;  3IU9 A;  1QZY A;  2GU4 A;  3FMR A;  2GG9 A;  2BH3 A;  3PKC A;  2Q92 A;  4IU6 A;  2EVO A;  4RZY A;  4U6Z A;  4IKU A;  2DFI A;  4U71 A;  1JAW A;  4B28 A;  1A16 A;  4U76 A;  4ZWO A;  3PKE A;  3PKD A;  4U73 A;  4ZWP A;  4S00 A;  1R5G A;  2Q96 A;  4JUQ A;  1C22 A;  4U6W A;  1XNZ A;  2MAT A;  4U6C A;  5FCF A;  1XGS A;  4U1B A;  2Q94 A;  1KQ0 A;  3FM3 A;  1C24 A;  5JFR A;  2GA2 A;  2GGB A;  2Q95 A;  2GG3 A;  5CDV A;  4FLL A;  1BOA A;  1XGM A;  1WL6 A;  3MAT A;  4U70 A;  1WN1 A;  1C27 A;  2OKN A;  2NQ7 A;  2BWS A;  5FCH A;  1R58 A;  2EA2 A;  5CDE A;  4ZWU A;  3CB5 A;  1W2M A;  2BWV A;  2P99 A;  2V3Z A;  1PV9 A;  2GG8 A;  3BIQ A;  2Q8K A;  2GG2 A;  2GGC A;  2EVC A;  3MR1 A;  2NQ6 A;  1WL9 A;  4S2T P;  5E5B A;  2HOW A; 
#chains in the Genus database with same CATH homology
 2B3K A;  2ZSG A;  4U75 A;  2BWT A;  5CDL A;  1C21 A;  4IPA A;  3D27 A;  1B6A A;  2B3H A;  5D6F A;  1XGO A;  2EA4 A;  3TB5 A;  4FKC A;  4IEC A;  2BWY A;  4FLJ A;  3BIP A;  1WY2 A;  4IF7 A;  1W7V A;  1WLR A;  4ZNG A;  1R5H A;  2BHD A;  1WBQ A;  1WKM A;  4HXX A;  5CE6 A;  3ROR A;  3CTZ A;  2P9A A;  3PKA A;  3CB6 A;  3L24 A;  4KM3 A;  5JI6 A;  4EGE A;  1B59 A;  2ADU A;  3IU8 A;  2GZ5 A;  4FO8 A;  2BB7 A;  4FLI A;  2G6P A;  4A6V A;  1YW8 A;  4PNC A;  1C23 A;  2GU7 A;  4S2R P;  1BN5 A;  2V3Y A;  4MAT A;  4PV4 A;  3L7G A;  3RVA A;  2BWW A;  1M35 A;  1CHM A;  5CIK A;  2GG7 A;  2BWX A;  1QXY A;  5D6E A;  2GG5 A;  3TAV A;  4IKR A;  1O0X A;  2GU5 A;  2BHB A;  3Q6D A;  4IKT A;  4S01 A;  2EVM A;  1QXZ A;  1YVM A;  4A6W A;  2OAZ A;  2GG0 A;  5CNX A;  4U6J A;  1QXW A;  4IDY A;  2V3X A;  3S6B A;  4FUK A;  4FO7 A;  3FMQ A;  2IW2 A;  1XGN A;  4U6E A;  2B3L A;  4Z7M A;  2P98 A;  1YW9 A;  4IKS A;  3IU7 A;  4QR8 A;  4OOK A;  2V6C A;  4RGZ 1;  5JHU A;  2BHA A;  3MX6 A;  3IG4 A;  2BWU A;  2Q93 A;  4R60 A;  4RZZ A;  4U69 A;  2GU6 A;  3BIT A;  1YW7 A;  1N51 A;  1YJ3 A;  1MAT A;  4FLK A;  1KQ9 A;  2BN7 A;  2BHC A;  3PKB A;  2GTX A;  5CLS A;  1KP0 A;  1Y1N A;  3IU9 A;  1QZY A;  2GU4 A;  3FMR A;  2GG9 A;  2BH3 A;  3PKC A;  2Q92 A;  4IU6 A;  2EVO A;  4RZY A;  4U6Z A;  4IKU A;  2DFI A;  4U71 A;  1JAW A;  4B28 A;  1A16 A;  4U76 A;  4ZWO A;  3PKE A;  3PKD A;  4U73 A;  4ZWP A;  4S00 A;  1R5G A;  2Q96 A;  4JUQ A;  1C22 A;  4U6W A;  1XNZ A;  2MAT A;  4U6C A;  5FCF A;  1XGS A;  4U1B A;  2Q94 A;  1KQ0 A;  3FM3 A;  1C24 A;  5JFR A;  2GA2 A;  2GGB A;  2Q95 A;  2GG3 A;  5CDV A;  4FLL A;  1BOA A;  1XGM A;  1WL6 A;  3MAT A;  4U70 A;  1WN1 A;  1C27 A;  2OKN A;  2NQ7 A;  2BWS A;  5FCH A;  1R58 A;  2EA2 A;  5CDE A;  4ZWU A;  3CB5 A;  1W2M A;  2BWV A;  2P99 A;  2V3Z A;  1PV9 A;  2GG8 A;  3BIQ A;  2Q8K A;  2GG2 A;  2GGC A;  2EVC A;  3MR1 A;  2NQ6 A;  1WL9 A;  4S2T P;  5E5B A;  2HOW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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