3E7NA

Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
Knots found
sequence length
140
structure length
140
Chain Sequence
NAMKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords D-ribose high-affinity transport system
publication title Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
rcsb
source organism Salmonella typhimurium
total genus 49
structure length 140
sequence length 140
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.99.62: D-ribose pyranase.
pdb deposition date 2008-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05025 RbsD_FucU RbsD / FucU transport protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1650.10 Alpha Beta 3-Layer(aba) Sandwich RbsD-like fold RbsD-like domain 3e7nA01
1OGFA 2WCVA 2WCUA 3MVKA 3P13A 2OB5A 1OGEA 3E7NA 4A34A 3P12A 1OGCA 1OGDA
chains in the Genus database with same CATH superfamily
1OGFA 2WCVA 2WCUA 3MVKA 3P13A 2OB5A 1OGEA 3E7NA 4A34A 3P12A 1OGCA 1OGDA
chains in the Genus database with same CATH topology
1OGFA 2WCVA 2WCUA 3MVKA 3P13A 2OB5A 1OGEA 3E7NA 4A34A 3P12A 1OGCA 1OGDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OGF A;  2WCV A;  2WCU A;  3MVK A;  3P13 A;  2OB5 A;  1OGE A;  3E7N A;  4A34 A;  3P12 A;  1OGC A;  1OGD A; 
#chains in the Genus database with same CATH topology
 1OGF A;  2WCV A;  2WCU A;  3MVK A;  3P13 A;  2OB5 A;  1OGE A;  3E7N A;  4A34 A;  3P12 A;  1OGC A;  1OGD A; 
#chains in the Genus database with same CATH homology
 1OGF A;  2WCV A;  2WCU A;  3MVK A;  3P13 A;  2OB5 A;  1OGE A;  3E7N A;  4A34 A;  3P12 A;  1OGC A;  1OGD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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