The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
26
|
sequence length |
140
|
structure length |
140
|
Chain Sequence |
PTLHTFQVPQNYTKANCTYCNTREYTFSYKGCCFYFTKKKHTWNGCFQACAELYPCTYFYGPTPDILPVVTRNLNAIESLWVGVYRVGEGNWTSLDGGTFKVYQIFGSHCTYVSKFSTVPVSHHECSFLKPCLCVSQRSN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of Epstein-Barr virus glycoprotein 42 suggests a mechanism for triggering receptor-activated virus entry.
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| source organism |
Human herpesvirus 4 (strain b95-8)
|
| molecule keywords |
Glycoprotein gp42
|
| total genus |
26
|
| structure length |
140
|
| sequence length |
140
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2008-11-24 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Mannose-Binding Protein A; Chain A | Mannose-Binding Protein A, subunit A |
#chains in the Genus database with same CATH superfamily 1J34 B; 4YMD A; 2IT6 A; 1RDL 1; 3ZHG A; 3NCW A; 1IOD B; 1UKM B; 3WH2 A; 1MUQ A; 1TN3 A; 1KWV A; 4WUX A; 3UBU A; 1KWU A; 1E5U I; 3NCX A; 1IXX B; 1IJK B; 5FFT A; 3HUP A; 1WK1 A; 1B6E A; 3WBR A; 1KMB 1; 5FFS A; 1WMY A; 4J6P A; 3BDW B; 1AFA 1; 1QDD A; 4J6L A; 1SL6 A; 1G1R A; 1SL4 A; 4WR9 A; 3T3A A; 3GPR B; 1SL5 A; 3G8L A; 1B08 A; 3WWK B; 1SB2 B; 1FIF A; 3P5F A; 1F02 I; 1WT9 B; 5FFR A; 1U0O B; 3G81 A; 3KMB 1; 1C3A A; 4ZES A; 1RDO 1; 1V4L A; 1RDM 1; 5KTH A; 1KWY A; 1V7P A; 1J34 A; 3IKR A; 1BJ3 B; 1IJK C; 2N40 A; 4LU5 A; 3P5I A; 1FM5 A; 1K9I A; 1IOD A; 5B1R A; 1UKM A; 3PAQ A; 3VPP A; 1RDN 1; 3VLG A; 4KMB 1; 1WMZ A; 1G1S A; 4M17 A; 2GGU A; 2ORJ A; 1IXX A; 1E87 A; 4C9F A; 1H8U A; 1P1Z D; 1OZ7 B; 1KZE 1; 3GPR C; 3ZHG D; 4EZM G; 3FF7 C; 4GJX A; 1JWI B; 3PBF A; 2XR6 A; 3BDW A; 4GI0 A; 2IT5 A; 1V7P B; 3GPR A; 1KWX A; 4WRC A; 1UMR A; 1SB2 A; 1Y17 A; 4J6Q A; 3WWK A; 2PY2 A; 4N38 A; 1X2W B; 4GK1 A; 4N32 A; 1WT9 A; 2ZWK A; 3BX4 B; 1T8C A; 2OX9 A; 5K8Y A; 3WBQ A; 1U0O A; 1YPO A; 4UWW A; 1MPU A; 3P7G A; 5LGK E; 4C16 A; 1UV0 A; 4KZV A; 4IOP B; 3M9Z A; 1FVU B; 2RID A; 3CCK A; 4KZW A; 1XAR A; 4WQQ A; 2LS8 A; 1BCH 1; 1YXJ A; 4J6M A; 4GKO G; 1KZC 1; 4QKI A; 4CAJ A; 4N36 A; 2BPE A; 2E3X B; 1BJ3 A; 4G9A A; 2VUZ A; 3WBP A; 2H2R A; 1DY2 A; 4PDC A; 2PF5 A; 1Y17 B; 1AFD 1; 4YLI A; 4M1G A; 1F00 I; 4S0U A; 4ZRW A; 4J6N A; 1KWT A; 1X2T B; 1RDK 1; 4ZET A; 2AFP A; 1OZ7 A; 1FIH A; 1BNL A; 3P7F A; 1JWI A; 4DN8 A; 2VUV A; 1RJH A; 1BYF A; 1G1Q A; 3P7H A; 2BPH A; 2RIB A; 1KX0 A; 1JA3 A; 2RIC A; 2MTI A; 3G84 A; 1UEX B; 1X2W A; 3L9J C; 2YHF A; 3BX4 A; 4J6K A; 2ORK A; 4LQF A; 2E3X C; 3ALU A; 3KQG A; 2OX8 A; 1KWW A; 1BUU A; 2ZIB A; 1RDJ 1; 1U0N B; 4IOP A; 1HQ8 A; 1RDI 1; 3GPR D; 1FVU A; 1JZN A; 3RS1 A; 3VYK A; 4N37 A; 2RIE A; 3CDG E; 2ZQK A; 2BRS A; 3ALS A; 1R14 A; 3DBZ A; 2H2T B; 1CWV A; 1E8I A; 4N33 A; 4PP8 A; 4N35 A; 1T8D A; 2OS9 A; 3PAR A; 3CDG F; 1O7C T; 1HYR A; 5KTI A; 4AK8 A; 1KZA 1; 3G83 A; 1X2T A; 5M62 A; 1YPU A; 3P5E A; 4WCO A; 2BPD A; 4WUW A; 3WSR A; 1MSB A; 1EGG A; 4WRF A; 5B1W A; 1KWZ A; 1UOS B; 1KZD 1; 3IKQ A; 1YXK A; 3CAD A; 2RIA A; 1U0N C; 5B1X A; 1UEX A; 3C8J A; 1YTT A; 1O7B T; 1BCJ 1; 4QKH A; 1J35 B; 1TDQ B; 4QKJ A; 4M18 A; 3WH3 A; 4E52 A; 1DY1 A; 1DV8 A; 3P5H A; 1KX1 A; 1KCG A; 2VRP B; 1TLG A; 1XPH A; 1G1T A; 1LIT A; 5J6G G; 3WHD A; 1P4L D; 4KI1 E; 5F2Q A; 1PW9 A; 2CL8 A; 1HTN A; 2M94 A; 1KG0 C; 2GGX A; 4WRE A; 3CFW A; 1BV4 A; 3ALT A; 3UBU B; 1HUP A; 3FF8 C; 3PAK A; 2KV3 A; 3P5G A; 4CSY A; 2MSB A; 4GJ0 A; 1GZ2 A; 4N34 A; 3P5D A; 1UOS A; 1AFB 1; 1KZB 1; 4MTH A; 1YPQ A; 4J6J A; 3IKP A; 1ESL A; 2GO0 A; 2XR5 A; 4G96 A; 2I83 A; 3IKN A; 1J35 A; 1DY0 A; 3C22 A; 2C6U A; 3VYJ A; 1PWB A; 3WWK C; 1UMR C; 1EGI A; 4ZRV A; 2KMB 1; 1R13 A; 3FF9 A; 3K7B A; 1KOE A; 4UXM A; 1C3A B; 2VRP A; 1RTM 1; 1QO3 C; 1V4L B; 4QKG A; 3G8K A; 1K9J A; 3C8K D; 3FD4 A; #chains in the Genus database with same CATH topology 1J34 B; 4YMD A; 2IT6 A; 1RDL 1; 3ZHG A; 3NCW A; 1IOD B; 1UKM B; 3WH2 A; 1MUQ A; 1TN3 A; 1KWV A; 4WUX A; 3UBU A; 1KWU A; 1E5U I; 3NCX A; 1IXX B; 1IJK B; 5FFT A; 3HUP A; 1WK1 A; 1B6E A; 3WBR A; 1KMB 1; 5FFS A; 1WMY A; 4J6P A; 3BDW B; 1AFA 1; 1QDD A; 4J6L A; 1SL6 A; 1G1R A; 1SL4 A; 4WR9 A; 3T3A A; 3GPR B; 1SL5 A; 3G8L A; 1B08 A; 3WWK B; 1SB2 B; 1FIF A; 3P5F A; 1F02 I; 1WT9 B; 5FFR A; 1U0O B; 3G81 A; 3KMB 1; 1C3A A; 4ZES A; 1RDO 1; 1V4L A; 1RDM 1; 5KTH A; 1KWY A; 1V7P A; 1J34 A; 3IKR A; 1BJ3 B; 1IJK C; 2N40 A; 4LU5 A; 3P5I A; 1FM5 A; 1K9I A; 1IOD A; 5B1R A; 1UKM A; 3PAQ A; 3VPP A; 1RDN 1; 3VLG A; 4KMB 1; 1WMZ A; 1G1S A; 4M17 A; 2GGU A; 2ORJ A; 1IXX A; 1E87 A; 4C9F A; 1H8U A; 1P1Z D; 1OZ7 B; 1KZE 1; 3GPR C; 3ZHG D; 4EZM G; 3FF7 C; 4GJX A; 1JWI B; 3PBF A; 2XR6 A; 3BDW A; 4GI0 A; 2IT5 A; 1V7P B; 3GPR A; 1KWX A; 4WRC A; 1UMR A; 1SB2 A; 1Y17 A; 4J6Q A; 3WWK A; 2PY2 A; 4N38 A; 1X2W B; 4GK1 A; 4N32 A; 1WT9 A; 2ZWK A; 3BX4 B; 1T8C A; 2OX9 A; 5K8Y A; 3WBQ A; 1U0O A; 1YPO A; 4UWW A; 1MPU A; 3P7G A; 5LGK E; 4C16 A; 1UV0 A; 4KZV A; 4IOP B; 3M9Z A; 1FVU B; 2RID A; 3CCK A; 4KZW A; 1XAR A; 4WQQ A; 2LS8 A; 1BCH 1; 1YXJ A; 4J6M A; 4GKO G; 1KZC 1; 4QKI A; 4CAJ A; 4N36 A; 2BPE A; 2E3X B; 1BJ3 A; 4G9A A; 2VUZ A; 3WBP A; 2H2R A; 1DY2 A; 4PDC A; 2PF5 A; 1Y17 B; 1AFD 1; 4YLI A; 4M1G A; 1F00 I; 4S0U A; 4ZRW A; 4J6N A; 1KWT A; 1X2T B; 1RDK 1; 4ZET A; 2AFP A; 1OZ7 A; 1FIH A; 1BNL A; 3P7F A; 1JWI A; 4DN8 A; 2VUV A; 1RJH A; 1BYF A; 1G1Q A; 3P7H A; 2BPH A; 2RIB A; 1KX0 A; 1JA3 A; 2RIC A; 2MTI A; 3G84 A; 1UEX B; 1X2W A; 3L9J C; 2YHF A; 3BX4 A; 4J6K A; 2ORK A; 4LQF A; 2E3X C; 3ALU A; 3KQG A; 2OX8 A; 1KWW A; 1BUU A; 2ZIB A; 1RDJ 1; 1U0N B; 4IOP A; 1HQ8 A; 1RDI 1; 3GPR D; 1FVU A; 1JZN A; 3RS1 A; 3VYK A; 4N37 A; 2RIE A; 3CDG E; 2ZQK A; 2BRS A; 3ALS A; 1R14 A; 3DBZ A; 2H2T B; 1CWV A; 1E8I A; 4N33 A; 4PP8 A; 4N35 A; 1T8D A; 2OS9 A; 3PAR A; 3CDG F; 1O7C T; 1HYR A; 5KTI A; 4AK8 A; 1KZA 1; 3G83 A; 1X2T A; 5M62 A; 1YPU A; 3P5E A; 4WCO A; 2BPD A; 4WUW A; 3WSR A; 1MSB A; 1EGG A; 4WRF A; 5B1W A; 1KWZ A; 1UOS B; 1KZD 1; 3IKQ A; 1YXK A; 3CAD A; 2RIA A; 1U0N C; 5B1X A; 1UEX A; 3C8J A; 1YTT A; 1O7B T; 1BCJ 1; 4QKH A; 1J35 B; 1TDQ B; 4QKJ A; 4M18 A; 3WH3 A; 4E52 A; 1DY1 A; 1DV8 A; 3P5H A; 1KX1 A; 1KCG A; 2VRP B; 1TLG A; 1XPH A; 1G1T A; 1LIT A; 5J6G G; 3WHD A; 1P4L D; 4KI1 E; 5F2Q A; 1PW9 A; 2CL8 A; 1HTN A; 2M94 A; 1KG0 C; 2GGX A; 4WRE A; 3CFW A; 1BV4 A; 3ALT A; 3UBU B; 1HUP A; 3FF8 C; 3PAK A; 2KV3 A; 3P5G A; 4CSY A; 2MSB A; 4GJ0 A; 1GZ2 A; 4N34 A; 3P5D A; 1UOS A; 1AFB 1; 1KZB 1; 4MTH A; 1YPQ A; 4J6J A; 3IKP A; 1ESL A; 2GO0 A; 2XR5 A; 4G96 A; 2I83 A; 3IKN A; 1J35 A; 1DY0 A; 3C22 A; 2C6U A; 3VYJ A; 1PWB A; 3WWK C; 1UMR C; 1EGI A; 4ZRV A; 2KMB 1; 1R13 A; 3FF9 A; 3K7B A; 1KOE A; 4UXM A; 1C3A B; 2VRP A; 1RTM 1; 1QO3 C; 1V4L B; 4QKG A; 3G8K A; 1K9J A; 3C8K D; 3FD4 A; #chains in the Genus database with same CATH homology 1J34 B; 4YMD A; 2IT6 A; 1RDL 1; 3ZHG A; 3NCW A; 1IOD B; 1UKM B; 3WH2 A; 1MUQ A; 1TN3 A; 1KWV A; 4WUX A; 3UBU A; 1KWU A; 1E5U I; 3NCX A; 1IXX B; 1IJK B; 5FFT A; 3HUP A; 1WK1 A; 1B6E A; 3WBR A; 1KMB 1; 5FFS A; 1WMY A; 4J6P A; 3BDW B; 1AFA 1; 1QDD A; 4J6L A; 1SL6 A; 1G1R A; 1SL4 A; 4WR9 A; 3T3A A; 3GPR B; 1SL5 A; 3G8L A; 1B08 A; 3WWK B; 1SB2 B; 1FIF A; 3P5F A; 1F02 I; 1WT9 B; 5FFR A; 1U0O B; 3G81 A; 3KMB 1; 1C3A A; 4ZES A; 1RDO 1; 1V4L A; 1RDM 1; 5KTH A; 1KWY A; 1V7P A; 1J34 A; 3IKR A; 1BJ3 B; 1IJK C; 2N40 A; 4LU5 A; 3P5I A; 1FM5 A; 1K9I A; 1IOD A; 5B1R A; 1UKM A; 3PAQ A; 3VPP A; 1RDN 1; 3VLG A; 4KMB 1; 1WMZ A; 1G1S A; 4M17 A; 2GGU A; 2ORJ A; 1IXX A; 1E87 A; 4C9F A; 1H8U A; 1P1Z D; 1OZ7 B; 1KZE 1; 3GPR C; 3ZHG D; 4EZM G; 3FF7 C; 4GJX A; 1JWI B; 3PBF A; 2XR6 A; 3BDW A; 4GI0 A; 2IT5 A; 1V7P B; 3GPR A; 1KWX A; 4WRC A; 1UMR A; 1SB2 A; 1Y17 A; 4J6Q A; 3WWK A; 2PY2 A; 4N38 A; 1X2W B; 4GK1 A; 4N32 A; 1WT9 A; 2ZWK A; 3BX4 B; 1T8C A; 2OX9 A; 5K8Y A; 3WBQ A; 1U0O A; 1YPO A; 4UWW A; 1MPU A; 3P7G A; 5LGK E; 4C16 A; 1UV0 A; 4KZV A; 4IOP B; 3M9Z A; 1FVU B; 2RID A; 3CCK A; 4KZW A; 1XAR A; 4WQQ A; 2LS8 A; 1BCH 1; 1YXJ A; 4J6M A; 4GKO G; 1KZC 1; 4QKI A; 4CAJ A; 4N36 A; 2BPE A; 2E3X B; 1BJ3 A; 4G9A A; 2VUZ A; 3WBP A; 2H2R A; 1DY2 A; 4PDC A; 2PF5 A; 1Y17 B; 1AFD 1; 4YLI A; 4M1G A; 1F00 I; 4S0U A; 4ZRW A; 4J6N A; 1KWT A; 1X2T B; 1RDK 1; 4ZET A; 2AFP A; 1OZ7 A; 1FIH A; 1BNL A; 3P7F A; 1JWI A; 4DN8 A; 2VUV A; 1RJH A; 1BYF A; 1G1Q A; 3P7H A; 2BPH A; 2RIB A; 1KX0 A; 1JA3 A; 2RIC A; 2MTI A; 3G84 A; 1UEX B; 1X2W A; 3L9J C; 2YHF A; 3BX4 A; 4J6K A; 2ORK A; 4LQF A; 2E3X C; 3ALU A; 3KQG A; 2OX8 A; 1KWW A; 1BUU A; 2ZIB A; 1RDJ 1; 1U0N B; 4IOP A; 1HQ8 A; 1RDI 1; 3GPR D; 1FVU A; 1JZN A; 3RS1 A; 3VYK A; 4N37 A; 2RIE A; 3CDG E; 2ZQK A; 2BRS A; 3ALS A; 1R14 A; 3DBZ A; 2H2T B; 1CWV A; 1E8I A; 4N33 A; 4PP8 A; 4N35 A; 1T8D A; 2OS9 A; 3PAR A; 3CDG F; 1O7C T; 1HYR A; 5KTI A; 4AK8 A; 1KZA 1; 3G83 A; 1X2T A; 5M62 A; 1YPU A; 3P5E A; 4WCO A; 2BPD A; 4WUW A; 3WSR A; 1MSB A; 1EGG A; 4WRF A; 5B1W A; 1KWZ A; 1UOS B; 1KZD 1; 3IKQ A; 1YXK A; 3CAD A; 2RIA A; 1U0N C; 5B1X A; 1UEX A; 3C8J A; 1YTT A; 1O7B T; 1BCJ 1; 4QKH A; 1J35 B; 1TDQ B; 4QKJ A; 4M18 A; 3WH3 A; 4E52 A; 1DY1 A; 1DV8 A; 3P5H A; 1KX1 A; 1KCG A; 2VRP B; 1TLG A; 1XPH A; 1G1T A; 1LIT A; 5J6G G; 3WHD A; 1P4L D; 4KI1 E; 5F2Q A; 1PW9 A; 2CL8 A; 1HTN A; 2M94 A; 1KG0 C; 2GGX A; 4WRE A; 3CFW A; 1BV4 A; 3ALT A; 3UBU B; 1HUP A; 3FF8 C; 3PAK A; 2KV3 A; 3P5G A; 4CSY A; 2MSB A; 4GJ0 A; 1GZ2 A; 4N34 A; 3P5D A; 1UOS A; 1AFB 1; 1KZB 1; 4MTH A; 1YPQ A; 4J6J A; 3IKP A; 1ESL A; 2GO0 A; 2XR5 A; 4G96 A; 2I83 A; 3IKN A; 1J35 A; 1DY0 A; 3C22 A; 2C6U A; 3VYJ A; 1PWB A; 3WWK C; 1UMR C; 1EGI A; 4ZRV A; 2KMB 1; 1R13 A; 3FF9 A; 3K7B A; 1KOE A; 4UXM A; 1C3A B; 2VRP A; 1RTM 1; 1QO3 C; 1V4L B; 4QKG A; 3G8K A; 1K9J A; 3C8K D; 3FD4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
