3G65B

Crystal structure of the human rad9-rad1-hus1 dna damage checkpoint complex
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
261
structure length
261
Chain Sequence
YSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Cell cycle checkpoint control protein RAD9A
publication title Crystal structure of the rad9-rad1-hus1 DNA damage checkpoint complex--implications for clamp loading and regulation.
pubmed doi rcsb
source organism Homo sapiens
total genus 51
structure length 261
sequence length 261
ec nomenclature ec 3.1.11.2: Exodeoxyribonuclease III.
pdb deposition date 2009-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02144 Rad1 Repair protein Rad1/Rec1/Rad17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3g65B00
3FDSD 3A2FB 1PLRA 3P91A 2IO4B 3P87A 2Z0LA 2HIKB 2IJXA 3V60B 1UD9A 1IZ5A 3A1JB 3GGRB 3HSLX 3U61F 2HIIB 2OD8A 3P83A 1SXJF 3GGRA 2IX2A 3LX2A 2HIKC 5A6DA 1RWZA 1B77A 3VKXA 5HACA 3A1JC 5B7OA 1RXMA 3GGRC 3AIXB 3V62B 1DMLA 1GE8A 3FDSC 1UL1A 2HIIC 5E0UA 5JNED 1PLQA 3I2MX 3IFVA 1U76A 3U60F 4ZTDA 3F1WA 2ZVMA 2IO4A 1CZDA 3WGWA 2HIKA 3A1JA 5DAIA 1W60A 2AWAA 5E0TA 4D2GA 3V61B 2ZVLA 2HIIA 1U7BA 3AIZC 1ISQA 5H0TA 3AIXA 2ZVVA 2NTIB 3G65B 2ZVWA 3LX1A 3K4XA 5DA7A 1YYPA 5AUJA 5IWDA 1RXZA 1VYJA 2NTIC 3GPMA 3G65C 3AIZA 1T6LA 5IY4A 5CFKA 1VYMA 4TR6A 5E0VA 2IZOB 4HK1A 4L60A 4RJFA 1B8HA 2IX2B 4YHRA 1AXCA 3HI8A 3U5ZF 2ZVKA 3GPNA 3TBLA 2AVTA 2IZOC 4L6PA 2NTIA 3G65A 5IXAA 4CS5A 2IX2C 1IZ4A
chains in the Genus database with same CATH superfamily
3FDSD 3A2FB 1PLRA 3P91A 2IO4B 3P87A 2Z0LA 2HIKB 2IJXA 3V60B 1UD9A 1IZ5A 3A1JB 3GGRB 3HSLX 3U61F 2HIIB 2OD8A 3P83A 1SXJF 3GGRA 2IX2A 3LX2A 2HIKC 5A6DA 1RWZA 1B77A 3VKXA 5HACA 3A1JC 5B7OA 1RXMA 3GGRC 3AIXB 3V62B 1DMLA 1GE8A 3FDSC 1UL1A 2HIIC 5E0UA 5JNED 1PLQA 3I2MX 3IFVA 1U76A 3U60F 4ZTDA 3F1WA 2ZVMA 2IO4A 1CZDA 3WGWA 2HIKA 3A1JA 5DAIA 1W60A 2AWAA 5E0TA 4D2GA 3V61B 2ZVLA 2HIIA 1U7BA 3AIZC 1ISQA 5H0TA 3AIXA 2ZVVA 2NTIB 3G65B 2ZVWA 3LX1A 3K4XA 5DA7A 1YYPA 5AUJA 5IWDA 1RXZA 1VYJA 2NTIC 3GPMA 3G65C 3AIZA 1T6LA 5IY4A 5CFKA 1VYMA 4TR6A 5E0VA 2IZOB 4HK1A 4L60A 4RJFA 1B8HA 2IX2B 4YHRA 1AXCA 3HI8A 3U5ZF 2ZVKA 3GPNA 3TBLA 2AVTA 2IZOC 4L6PA 2NTIA 3G65A 5IXAA 4CS5A 2IX2C 1IZ4A
chains in the Genus database with same CATH topology
3FDSD 3A2FB 1PLRA 3P91A 2IO4B 3P87A 2Z0LA 2HIKB 2IJXA 3V60B 1UD9A 1IZ5A 3A1JB 3GGRB 3HSLX 3U61F 2HIIB 2OD8A 3P83A 1SXJF 3GGRA 2IX2A 3LX2A 2HIKC 5A6DA 1RWZA 1B77A 3VKXA 5HACA 3A1JC 5B7OA 1RXMA 3GGRC 3AIXB 3V62B 1DMLA 1GE8A 3FDSC 1UL1A 2HIIC 5E0UA 5JNED 1PLQA 3I2MX 3IFVA 1U76A 3U60F 4ZTDA 3F1WA 2ZVMA 2IO4A 1CZDA 3WGWA 2HIKA 3A1JA 5DAIA 1W60A 2AWAA 5E0TA 4D2GA 3V61B 2ZVLA 2HIIA 1U7BA 3AIZC 1ISQA 5H0TA 3AIXA 2ZVVA 2NTIB 3G65B 2ZVWA 3LX1A 3K4XA 5DA7A 1YYPA 5AUJA 5IWDA 1RXZA 1VYJA 2NTIC 3GPMA 3G65C 3AIZA 1T6LA 5IY4A 5CFKA 1VYMA 4TR6A 5E0VA 2IZOB 4HK1A 4L60A 4RJFA 1B8HA 2IX2B 4YHRA 1AXCA 3HI8A 3U5ZF 2ZVKA 3GPNA 3TBLA 2AVTA 2IZOC 4L6PA 2NTIA 3G65A 5IXAA 4CS5A 2IX2C 1IZ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FDS D;  3A2F B;  1PLR A;  3P91 A;  2IO4 B;  3P87 A;  2Z0L A;  2HIK B;  2IJX A;  3V60 B;  1UD9 A;  1IZ5 A;  3A1J B;  3GGR B;  3HSL X;  3U61 F;  2HII B;  2OD8 A;  3P83 A;  1SXJ F;  3GGR A;  2IX2 A;  3LX2 A;  2HIK C;  5A6D A;  1RWZ A;  1B77 A;  3VKX A;  5HAC A;  3A1J C;  5B7O A;  1RXM A;  3GGR C;  3AIX B;  3V62 B;  1DML A;  1GE8 A;  3FDS C;  1UL1 A;  2HII C;  5E0U A;  5JNE D;  1PLQ A;  3I2M X;  3IFV A;  1U76 A;  3U60 F;  4ZTD A;  3F1W A;  2ZVM A;  2IO4 A;  1CZD A;  3WGW A;  2HIK A;  3A1J A;  5DAI A;  1W60 A;  2AWA A;  5E0T A;  4D2G A;  3V61 B;  2ZVL A;  2HII A;  1U7B A;  3AIZ C;  1ISQ A;  5H0T A;  3AIX A;  2ZVV A;  2NTI B;  3G65 B;  2ZVW A;  3LX1 A;  3K4X A;  5DA7 A;  1YYP A;  5AUJ A;  5IWD A;  1RXZ A;  1VYJ A;  2NTI C;  3GPM A;  3G65 C;  3AIZ A;  1T6L A;  5IY4 A;  5CFK A;  1VYM A;  4TR6 A;  5E0V A;  2IZO B;  4HK1 A;  4L60 A;  4RJF A;  1B8H A;  2IX2 B;  4YHR A;  1AXC A;  3HI8 A;  3U5Z F;  2ZVK A;  3GPN A;  3TBL A;  2AVT A;  2IZO C;  4L6P A;  2NTI A;  3G65 A;  5IXA A;  4CS5 A;  2IX2 C;  1IZ4 A; 
#chains in the Genus database with same CATH topology
 3FDS D;  3A2F B;  1PLR A;  3P91 A;  2IO4 B;  3P87 A;  2Z0L A;  2HIK B;  2IJX A;  3V60 B;  1UD9 A;  1IZ5 A;  3A1J B;  3GGR B;  3HSL X;  3U61 F;  2HII B;  2OD8 A;  3P83 A;  1SXJ F;  3GGR A;  2IX2 A;  3LX2 A;  2HIK C;  5A6D A;  1RWZ A;  1B77 A;  3VKX A;  5HAC A;  3A1J C;  5B7O A;  1RXM A;  3GGR C;  3AIX B;  3V62 B;  1DML A;  1GE8 A;  3FDS C;  1UL1 A;  2HII C;  5E0U A;  5JNE D;  1PLQ A;  3I2M X;  3IFV A;  1U76 A;  3U60 F;  4ZTD A;  3F1W A;  2ZVM A;  2IO4 A;  1CZD A;  3WGW A;  2HIK A;  3A1J A;  5DAI A;  1W60 A;  2AWA A;  5E0T A;  4D2G A;  3V61 B;  2ZVL A;  2HII A;  1U7B A;  3AIZ C;  1ISQ A;  5H0T A;  3AIX A;  2ZVV A;  2NTI B;  3G65 B;  2ZVW A;  3LX1 A;  3K4X A;  5DA7 A;  1YYP A;  5AUJ A;  5IWD A;  1RXZ A;  1VYJ A;  2NTI C;  3GPM A;  3G65 C;  3AIZ A;  1T6L A;  5IY4 A;  5CFK A;  1VYM A;  4TR6 A;  5E0V A;  2IZO B;  4HK1 A;  4L60 A;  4RJF A;  1B8H A;  2IX2 B;  4YHR A;  1AXC A;  3HI8 A;  3U5Z F;  2ZVK A;  3GPN A;  3TBL A;  2AVT A;  2IZO C;  4L6P A;  2NTI A;  3G65 A;  5IXA A;  4CS5 A;  2IX2 C;  1IZ4 A; 
#chains in the Genus database with same CATH homology
 3FDS D;  3A2F B;  1PLR A;  3P91 A;  2IO4 B;  3P87 A;  2Z0L A;  2HIK B;  2IJX A;  3V60 B;  1UD9 A;  1IZ5 A;  3A1J B;  3GGR B;  3HSL X;  3U61 F;  2HII B;  2OD8 A;  3P83 A;  1SXJ F;  3GGR A;  2IX2 A;  3LX2 A;  2HIK C;  5A6D A;  1RWZ A;  1B77 A;  3VKX A;  5HAC A;  3A1J C;  5B7O A;  1RXM A;  3GGR C;  3AIX B;  3V62 B;  1DML A;  1GE8 A;  3FDS C;  1UL1 A;  2HII C;  5E0U A;  5JNE D;  1PLQ A;  3I2M X;  3IFV A;  1U76 A;  3U60 F;  4ZTD A;  3F1W A;  2ZVM A;  2IO4 A;  1CZD A;  3WGW A;  2HIK A;  3A1J A;  5DAI A;  1W60 A;  2AWA A;  5E0T A;  4D2G A;  3V61 B;  2ZVL A;  2HII A;  1U7B A;  3AIZ C;  1ISQ A;  5H0T A;  3AIX A;  2ZVV A;  2NTI B;  3G65 B;  2ZVW A;  3LX1 A;  3K4X A;  5DA7 A;  1YYP A;  5AUJ A;  5IWD A;  1RXZ A;  1VYJ A;  2NTI C;  3GPM A;  3G65 C;  3AIZ A;  1T6L A;  5IY4 A;  5CFK A;  1VYM A;  4TR6 A;  5E0V A;  2IZO B;  4HK1 A;  4L60 A;  4RJF A;  1B8H A;  2IX2 B;  4YHR A;  1AXC A;  3HI8 A;  3U5Z F;  2ZVK A;  3GPN A;  3TBL A;  2AVT A;  2IZO C;  4L6P A;  2NTI A;  3G65 A;  5IXA A;  4CS5 A;  2IX2 C;  1IZ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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