3G9YA

Crystal structure of the second zinc finger from zranb2/znf265 bound to 6 nt ssrna sequence agguaa
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
29
structure length
29
Chain Sequence
NDWQCKTCSNVNWARRSECNMCNTPKYAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/rna
molecule keywords Zinc finger Ran-binding domain-containing protein 2
publication title The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences
pubmed doi rcsb
source organism Homo sapiens
total genus 6
structure length 29
sequence length 29
ec nomenclature
pdb deposition date 2009-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00641 zf-RanBP Zn-finger in Ran binding protein and others
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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