3H7CX

Crystal structure of arabidopsis thaliana agmatine deiminase from cell free expression
Total Genus 136
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
376
structure length
369
Chain Sequence
SEESRESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Agmatine deiminase
publication title Structural Insights into the Catalytic Mechanism of Arabidopsis thaliana Agmatine Deiminase
rcsb
source organism Arabidopsis thaliana
total genus 136
structure length 369
sequence length 376
ec nomenclature ec 3.5.3.12: Agmatine deiminase.
pdb deposition date 2009-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF04371 PAD_porph Porphyromonas-type peptidyl-arginine deiminase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 3h7cX00
4N2MA 1JDXA 4YTGA 2CI3A 4X8GA 4N20A 3JDWA 3H7KA 4N2HA 3B1TA 2A9GA 3P8EA 4N2NA 4N2GA 2Q3UA 2CI1A 4N2LA 2EWOA 2AAFA 4BOFA 5AK7A 4N2IA 4DKTA 1G62A 1JDWA 4N2FA 4X8CA 9JDWA 1WD8A 8JDWA 3P8PA 2C6ZA 2JDWA 7JDWA 2CI7A 4JDWA 1ZBRA 2DEXX 2JDXA 3HVMA 4N28A 3APMA 4N2AA 1G61A 2DEWX 3B1UA 3I2EA 4N2EA 1VKPA 2JERA 5AN9I 2JAJA 3BPBA 5M3QA 1S9RA 1H70A 3RHYA 2CI5A 4N2BA 3I4AA 4YT9A 2CI4A 3APNA 3H7CX 2CMUA 5HP5A 6JDWA 4N25A 4N26A 5JDWA 2DW5A 2ABRA 1WD9A 4N24A 4YTBA 1XKNA 4N2CA 4N22A 1RXXA 4E4JA 2JAIA 2ACIA 2CI6A 2DEYX 4N2DA 1WDAA 1LXYA 5AK8A 1BWDA 4N2KA
chains in the Genus database with same CATH superfamily
4N2MA 1JDXA 4YTGA 2CI3A 4X8GA 4N20A 3JDWA 3H7KA 4N2HA 3B1TA 2A9GA 3P8EA 4N2NA 4N2GA 2Q3UA 2CI1A 4N2LA 2EWOA 2AAFA 4BOFA 5AK7A 4N2IA 4DKTA 1G62A 1JDWA 4N2FA 4X8CA 9JDWA 1WD8A 8JDWA 3P8PA 2C6ZA 2JDWA 7JDWA 2CI7A 4JDWA 1ZBRA 2DEXX 2JDXA 3HVMA 4N28A 3APMA 4N2AA 1G61A 2DEWX 3B1UA 3I2EA 4N2EA 1VKPA 2JERA 5AN9I 2JAJA 3BPBA 5M3QA 1S9RA 1H70A 3RHYA 2CI5A 1YNIA 4N2BA 3I4AA 4YT9A 2CI4A 3APNA 3H7CX 2CMUA 5HP5A 6JDWA 4N25A 4N26A 5JDWA 2DW5A 2ABRA 1WD9A 4N24A 4YTBA 4N2CA 1XKNA 1YNFA 4N22A 1RXXA 4E4JA 1YNHA 2JAIA 2ACIA 2CI6A 2DEYX 4N2DA 1WDAA 1LXYA 5AK8A 1BWDA 4N2KA
chains in the Genus database with same CATH topology
4N2MA 1JDXA 4YTGA 2CI3A 4X8GA 4N20A 3JDWA 3H7KA 4N2HA 3B1TA 2A9GA 3P8EA 4N2NA 4N2GA 2Q3UA 2CI1A 4N2LA 2EWOA 2AAFA 4BOFA 5AK7A 4N2IA 4DKTA 1G62A 1JDWA 4N2FA 4X8CA 9JDWA 1WD8A 8JDWA 3P8PA 2C6ZA 2JDWA 7JDWA 2CI7A 4JDWA 1ZBRA 2DEXX 2JDXA 3HVMA 4N28A 3APMA 4N2AA 1G61A 2DEWX 3B1UA 3I2EA 4N2EA 1VKPA 2JERA 5AN9I 2JAJA 3BPBA 5M3QA 1S9RA 1H70A 3RHYA 2CI5A 4N2BA 3I4AA 4YT9A 2CI4A 3APNA 3H7CX 2CMUA 5HP5A 6JDWA 4N25A 4N26A 5JDWA 2DW5A 2ABRA 1WD9A 4N24A 4YTBA 1XKNA 4N2CA 4N22A 1RXXA 4E4JA 2JAIA 2ACIA 2CI6A 2DEYX 4N2DA 1WDAA 1LXYA 5AK8A 1BWDA 4N2KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N2M A;  1JDX A;  4YTG A;  2CI3 A;  4X8G A;  4N20 A;  3JDW A;  3H7K A;  4N2H A;  3B1T A;  2A9G A;  3P8E A;  4N2N A;  4N2G A;  2Q3U A;  2CI1 A;  4N2L A;  2EWO A;  2AAF A;  4BOF A;  5AK7 A;  4N2I A;  4DKT A;  1G62 A;  1JDW A;  4N2F A;  4X8C A;  9JDW A;  1WD8 A;  8JDW A;  3P8P A;  2C6Z A;  2JDW A;  7JDW A;  2CI7 A;  4JDW A;  1ZBR A;  2DEX X;  2JDX A;  3HVM A;  4N28 A;  3APM A;  4N2A A;  1G61 A;  2DEW X;  3B1U A;  3I2E A;  4N2E A;  1VKP A;  2JER A;  5AN9 I;  2JAJ A;  3BPB A;  5M3Q A;  1S9R A;  1H70 A;  3RHY A;  2CI5 A;  4N2B A;  3I4A A;  4YT9 A;  2CI4 A;  3APN A;  3H7C X;  2CMU A;  5HP5 A;  6JDW A;  4N25 A;  4N26 A;  5JDW A;  2DW5 A;  2ABR A;  1WD9 A;  4N24 A;  4YTB A;  1XKN A;  4N2C A;  4N22 A;  1RXX A;  4E4J A;  2JAI A;  2ACI A;  2CI6 A;  2DEY X;  4N2D A;  1WDA A;  1LXY A;  5AK8 A;  1BWD A;  4N2K A; 
#chains in the Genus database with same CATH topology
 4N2M A;  1JDX A;  4YTG A;  2CI3 A;  4X8G A;  4N20 A;  3JDW A;  3H7K A;  4N2H A;  3B1T A;  2A9G A;  3P8E A;  4N2N A;  4N2G A;  2Q3U A;  2CI1 A;  4N2L A;  2EWO A;  2AAF A;  4BOF A;  5AK7 A;  4N2I A;  4DKT A;  1G62 A;  1JDW A;  4N2F A;  4X8C A;  9JDW A;  1WD8 A;  8JDW A;  3P8P A;  2C6Z A;  2JDW A;  7JDW A;  2CI7 A;  4JDW A;  1ZBR A;  2DEX X;  2JDX A;  3HVM A;  4N28 A;  3APM A;  4N2A A;  1G61 A;  2DEW X;  3B1U A;  3I2E A;  4N2E A;  1VKP A;  2JER A;  5AN9 I;  2JAJ A;  3BPB A;  5M3Q A;  1S9R A;  1H70 A;  3RHY A;  2CI5 A;  1YNI A;  4N2B A;  3I4A A;  4YT9 A;  2CI4 A;  3APN A;  3H7C X;  2CMU A;  5HP5 A;  6JDW A;  4N25 A;  4N26 A;  5JDW A;  2DW5 A;  2ABR A;  1WD9 A;  4N24 A;  4YTB A;  4N2C A;  1XKN A;  1YNF A;  4N22 A;  1RXX A;  4E4J A;  1YNH A;  2JAI A;  2ACI A;  2CI6 A;  2DEY X;  4N2D A;  1WDA A;  1LXY A;  5AK8 A;  1BWD A;  4N2K A; 
#chains in the Genus database with same CATH homology
 4N2M A;  1JDX A;  4YTG A;  2CI3 A;  4X8G A;  4N20 A;  3JDW A;  3H7K A;  4N2H A;  3B1T A;  2A9G A;  3P8E A;  4N2N A;  4N2G A;  2Q3U A;  2CI1 A;  4N2L A;  2EWO A;  2AAF A;  4BOF A;  5AK7 A;  4N2I A;  4DKT A;  1G62 A;  1JDW A;  4N2F A;  4X8C A;  9JDW A;  1WD8 A;  8JDW A;  3P8P A;  2C6Z A;  2JDW A;  7JDW A;  2CI7 A;  4JDW A;  1ZBR A;  2DEX X;  2JDX A;  3HVM A;  4N28 A;  3APM A;  4N2A A;  1G61 A;  2DEW X;  3B1U A;  3I2E A;  4N2E A;  1VKP A;  2JER A;  5AN9 I;  2JAJ A;  3BPB A;  5M3Q A;  1S9R A;  1H70 A;  3RHY A;  2CI5 A;  4N2B A;  3I4A A;  4YT9 A;  2CI4 A;  3APN A;  3H7C X;  2CMU A;  5HP5 A;  6JDW A;  4N25 A;  4N26 A;  5JDW A;  2DW5 A;  2ABR A;  1WD9 A;  4N24 A;  4YTB A;  1XKN A;  4N2C A;  4N22 A;  1RXX A;  4E4J A;  2JAI A;  2ACI A;  2CI6 A;  2DEY X;  4N2D A;  1WDA A;  1LXY A;  5AK8 A;  1BWD A;  4N2K A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...