3I4AA

Crystal structure of dimethylarginine dimethylaminohydrolase-1 (ddah-1) in complex with n5-(1-iminopropyl)-l-ornithine
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
275
structure length
275
Chain Sequence
AAFGRATHAVVRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSMSELEKVDGLLTCCSVLINKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords N(G),N(G)-dimethylarginine dimethylaminohydrolase 1
publication title Developing dual and specific inhibitors of dimethylarginine dimethylaminohydrolase-1 and nitric oxide synthase: toward a targeted polypharmacology to control nitric oxide.
pubmed doi rcsb
source organism Homo sapiens
total genus 90
structure length 275
sequence length 275
chains with identical sequence B
ec nomenclature ec 3.5.3.18: Dimethylargininase.
pdb deposition date 2009-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02274 Amidinotransf Amidinotransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 3i4aA00
3B1TA 1G62A 4N20A 3APMA 3I2EA 2DEXX 1G61A 3H7KA 2JERA 2Q3UA 3HVMA 4DKTA 4E4JA 1LXYA 4N2IA 1XKNA 3P8EA 1RXXA 9JDWA 2CMUA 4N2GA 1WDAA 4N2LA 1H70A 4N28A 1WD8A 2EWOA 3I4AA 4N26A 2JDWA 4N22A 4JDWA 2JAIA 2CI7A 3B1UA 4YTBA 4N2KA 2JAJA 5AK7A 4N25A 2ACIA 5HP5A 3H7CX 1S9RA 3RHYA 2CI3A 1WD9A 4YTGA 4N2NA 2DEWX 4N2CA 3APNA 6JDWA 4X8GA 2C6ZA 1BWDA 2CI5A 5JDWA 5M3QA 3BPBA 2A9GA 2AAFA 1VKPA 7JDWA 4BOFA 2CI6A 4YT9A 2CI1A 1JDWA 1JDXA 2CI4A 2DEYX 4N2AA 3P8PA 4N2HA 1ZBRA 5AN9I 4N2MA 4X8CA 4N2EA 3JDWA 2ABRA 2JDXA 4N2BA 8JDWA 2DW5A 4N2DA 4N24A 4N2FA 5AK8A
chains in the Genus database with same CATH superfamily
3B1TA 1G62A 4N20A 3APMA 3I2EA 2DEXX 1G61A 3H7KA 2JERA 2Q3UA 3HVMA 4DKTA 4E4JA 1LXYA 1YNHA 4N2IA 1XKNA 3P8EA 1RXXA 9JDWA 2CMUA 4N2GA 1WDAA 4N2LA 1H70A 4N28A 1WD8A 2EWOA 3I4AA 4N26A 2JDWA 4N22A 4JDWA 2JAIA 2CI7A 3B1UA 4YTBA 4N2KA 2JAJA 5AK7A 4N25A 2ACIA 5HP5A 3H7CX 1S9RA 3RHYA 2CI3A 1WD9A 4YTGA 4N2NA 2DEWX 4N2CA 3APNA 6JDWA 4X8GA 2C6ZA 1BWDA 2CI5A 5JDWA 5M3QA 3BPBA 2A9GA 2AAFA 1VKPA 7JDWA 4BOFA 2CI6A 1YNFA 4YT9A 2CI1A 1JDWA 1JDXA 2CI4A 2DEYX 4N2AA 3P8PA 4N2HA 1ZBRA 5AN9I 4N2MA 4X8CA 1YNIA 4N2EA 3JDWA 2ABRA 2JDXA 4N2BA 8JDWA 2DW5A 4N2DA 4N24A 4N2FA 5AK8A
chains in the Genus database with same CATH topology
3B1TA 1G62A 4N20A 3APMA 3I2EA 2DEXX 1G61A 3H7KA 2JERA 2Q3UA 3HVMA 4DKTA 4E4JA 1LXYA 4N2IA 1XKNA 3P8EA 1RXXA 9JDWA 2CMUA 4N2GA 1WDAA 4N2LA 1H70A 4N28A 1WD8A 2EWOA 3I4AA 4N26A 2JDWA 4N22A 4JDWA 2JAIA 2CI7A 3B1UA 4YTBA 4N2KA 2JAJA 5AK7A 4N25A 2ACIA 5HP5A 3H7CX 1S9RA 3RHYA 2CI3A 1WD9A 4YTGA 4N2NA 2DEWX 4N2CA 3APNA 6JDWA 4X8GA 2C6ZA 1BWDA 2CI5A 5JDWA 5M3QA 3BPBA 2A9GA 2AAFA 1VKPA 7JDWA 4BOFA 2CI6A 4YT9A 2CI1A 1JDWA 1JDXA 2CI4A 2DEYX 4N2AA 3P8PA 4N2HA 1ZBRA 5AN9I 4N2MA 4X8CA 4N2EA 3JDWA 2ABRA 2JDXA 4N2BA 8JDWA 2DW5A 4N2DA 4N24A 4N2FA 5AK8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B1T A;  1G62 A;  4N20 A;  3APM A;  3I2E A;  2DEX X;  1G61 A;  3H7K A;  2JER A;  2Q3U A;  3HVM A;  4DKT A;  4E4J A;  1LXY A;  4N2I A;  1XKN A;  3P8E A;  1RXX A;  9JDW A;  2CMU A;  4N2G A;  1WDA A;  4N2L A;  1H70 A;  4N28 A;  1WD8 A;  2EWO A;  3I4A A;  4N26 A;  2JDW A;  4N22 A;  4JDW A;  2JAI A;  2CI7 A;  3B1U A;  4YTB A;  4N2K A;  2JAJ A;  5AK7 A;  4N25 A;  2ACI A;  5HP5 A;  3H7C X;  1S9R A;  3RHY A;  2CI3 A;  1WD9 A;  4YTG A;  4N2N A;  2DEW X;  4N2C A;  3APN A;  6JDW A;  4X8G A;  2C6Z A;  1BWD A;  2CI5 A;  5JDW A;  5M3Q A;  3BPB A;  2A9G A;  2AAF A;  1VKP A;  7JDW A;  4BOF A;  2CI6 A;  4YT9 A;  2CI1 A;  1JDW A;  1JDX A;  2CI4 A;  2DEY X;  4N2A A;  3P8P A;  4N2H A;  1ZBR A;  5AN9 I;  4N2M A;  4X8C A;  4N2E A;  3JDW A;  2ABR A;  2JDX A;  4N2B A;  8JDW A;  2DW5 A;  4N2D A;  4N24 A;  4N2F A;  5AK8 A; 
#chains in the Genus database with same CATH topology
 3B1T A;  1G62 A;  4N20 A;  3APM A;  3I2E A;  2DEX X;  1G61 A;  3H7K A;  2JER A;  2Q3U A;  3HVM A;  4DKT A;  4E4J A;  1LXY A;  1YNH A;  4N2I A;  1XKN A;  3P8E A;  1RXX A;  9JDW A;  2CMU A;  4N2G A;  1WDA A;  4N2L A;  1H70 A;  4N28 A;  1WD8 A;  2EWO A;  3I4A A;  4N26 A;  2JDW A;  4N22 A;  4JDW A;  2JAI A;  2CI7 A;  3B1U A;  4YTB A;  4N2K A;  2JAJ A;  5AK7 A;  4N25 A;  2ACI A;  5HP5 A;  3H7C X;  1S9R A;  3RHY A;  2CI3 A;  1WD9 A;  4YTG A;  4N2N A;  2DEW X;  4N2C A;  3APN A;  6JDW A;  4X8G A;  2C6Z A;  1BWD A;  2CI5 A;  5JDW A;  5M3Q A;  3BPB A;  2A9G A;  2AAF A;  1VKP A;  7JDW A;  4BOF A;  2CI6 A;  1YNF A;  4YT9 A;  2CI1 A;  1JDW A;  1JDX A;  2CI4 A;  2DEY X;  4N2A A;  3P8P A;  4N2H A;  1ZBR A;  5AN9 I;  4N2M A;  4X8C A;  1YNI A;  4N2E A;  3JDW A;  2ABR A;  2JDX A;  4N2B A;  8JDW A;  2DW5 A;  4N2D A;  4N24 A;  4N2F A;  5AK8 A; 
#chains in the Genus database with same CATH homology
 3B1T A;  1G62 A;  4N20 A;  3APM A;  3I2E A;  2DEX X;  1G61 A;  3H7K A;  2JER A;  2Q3U A;  3HVM A;  4DKT A;  4E4J A;  1LXY A;  4N2I A;  1XKN A;  3P8E A;  1RXX A;  9JDW A;  2CMU A;  4N2G A;  1WDA A;  4N2L A;  1H70 A;  4N28 A;  1WD8 A;  2EWO A;  3I4A A;  4N26 A;  2JDW A;  4N22 A;  4JDW A;  2JAI A;  2CI7 A;  3B1U A;  4YTB A;  4N2K A;  2JAJ A;  5AK7 A;  4N25 A;  2ACI A;  5HP5 A;  3H7C X;  1S9R A;  3RHY A;  2CI3 A;  1WD9 A;  4YTG A;  4N2N A;  2DEW X;  4N2C A;  3APN A;  6JDW A;  4X8G A;  2C6Z A;  1BWD A;  2CI5 A;  5JDW A;  5M3Q A;  3BPB A;  2A9G A;  2AAF A;  1VKP A;  7JDW A;  4BOF A;  2CI6 A;  4YT9 A;  2CI1 A;  1JDW A;  1JDX A;  2CI4 A;  2DEY X;  4N2A A;  3P8P A;  4N2H A;  1ZBR A;  5AN9 I;  4N2M A;  4X8C A;  4N2E A;  3JDW A;  2ABR A;  2JDX A;  4N2B A;  8JDW A;  2DW5 A;  4N2D A;  4N24 A;  4N2F A;  5AK8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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