3I4MF

8-oxoguanine containing rna polymerase ii elongation complex d
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
88
structure length
88
Chain Sequence
TLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription,transferase/dna-rna hybrid
molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Molecular basis of transcriptional mutagenesis at 8-oxoguanine
pubmed doi rcsb
total genus 19
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 2009-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 3i4mF00
4A3MF 2JA6F 4Y52F 1IW7E 4OIRE 3WODE 4KMUE 5D4DE 3I4MF 3GTLF 1TWGF 3CQZF 1TWAF 5IP7F 3PO3F 4Y7NF 1Y1WF 3H0GF 4G7OE 5E18E 3GTOF 4XSZE 2NVTF 5TMCE 4LK0E 5M5WF 3FKIF 3GTQF 2B63F 5M3MF 1I3QF 5TMFE 2WAQK 2NVYF 4LJZE 4BBSF 3GTPF 4XLNE 4KN7E 3I4NF 5C4JF 2R92F 4MEYE 4BY7F 3HOZF 2E2HF 3S15F 1SFOF 4Q4ZE 1WCMF 2WB1I 3PO2F 3H3VG 5BYHE 3S14F 3S1NF 1YNJK 3HOUF 5C44F 4YG2E 1I6VE 2CW0E 4C2MF 4Q5SE 4YFNE 5C3EF 4GZYE 2Y0SI 2R93F 4YFXE 1QKLA 4AYBK 5IP9F 1K83F 4X6AF 4C3HF 3HKZK 3DXJE 4C3JF 2E2IF 1YNNK 4OIOE 3K7AF 3S17F 1R9TF 2NVXF 3S2HF 5E17E 3GTJF 4A3LF 5C4XF 4A3BF 3GTKF 5FJ8F 4YFKE 1Y1VF 4BXXF 2PPBE 5M3FF 3S16F 2BE5E 2VUMF 4G7HE 1I6HF 4OINE 3M3YF 4C3IF 1TWFF 1ZYRE 3M4OF 2A69E 4JK1E 1I50F 2JA8F 4A3DF 4LK1E 3HOVF 2JA7F 2NVQF 1HQME 4XSXE 2PMZK 2A6HE 5IYDF 4OIPE 1SMYE 4ZH4E 3S1RF 3HOYF 4A3KF 4A3CF 4MEXE 4OIQE 3S1MF 5D4EE 4LLGE 2YU9F 3S1QF 1TWCF 1TWHF 4KN4E 3S2DF 4A3GF 4MQ9E 4A3IF 4A3EF 4XLPE 5M5XF 5FLMF 2JA5F 3EQLE 2O5JE 4A3FF 4BBRF 3GTMF 4A93F 4BY1F 3HOXF 4A3JF 2A6EE 3GTGF 3HOWF 2R7ZF 5M5YF 2E2JF 5IPLE 4G7ZE 5D4CE 3RZOF 5IYBF 3RZDF 5IYCF 2A68E 2O5IE
chains in the Genus database with same CATH superfamily
4A3MF 4C2ME 2PMZH 2JA6F 4Y52F 1IW7E 4OIRE 3WODE 4KMUE 2R93E 5D4DE 3I4MF 2NVTE 3GTLF 5IP9E 1K83E 1TWGF 4X6AE 3CQZF 1TWAF 5IP7F 3PO3F 4C3JE 4Y7NF 1I3QE 1Y1WF 2E2IE 3S17E 3H0GF 1R9TE 3GTPE 4G7OE 5E18E 3GTOF 3S2HE 4XSZE 1DZFA 3I4NE 3GTJE 2NVTF 5TMCE 4LK0E 5C4XE 5M5WF 4A3BE 3GTKE 5FJ8E 3FKIF 3GTQF 2B63F 1SFOE 2WAQH 5M3MF 5M3FE 3PO2E 1I3QF 5TMFE 2WAQK 2NVYF 4LJZE 3S16E 4BBSF 2VUME 3GTPF 4XLNE 4KN7E 3I4NF 5C44E 5C4JF 2R92F 5C3EE 1I6HE 4MEYE 4BY7F 3HOZF 3M3YE 2E2HF 3S15F 1SFOF 4Q4ZE 1WCMF 2WB1I 3PO2F 3M4OE 2KRXA 3H3VG 5BYHE 3S14F 3S1NF 1YNJK 1I50E 4C3HE 3HOUF 5C44F 4YG2E 2JA8E 4A3DE 1I6VE 2CW0E 4C2MF 4Q5SE 4YFNE 5C3EF 3K7AE 2NVQE 4GZYE 2Y0SI 2NVXE 2R93F 4AYBH 4YFXE 5IYDE 1QKLA 2WB1H 4AYBK 3S1RE 4A3LE 5IP9F 1K83F 3HKZH 4A3KE 3HOYE 4X6AF 3S1ME 4C3HF 1Y1VE 3HKZK 4BXXE 3DXJE 4C3JF 3S1QE 2E2IF 3S2DE 1EIKA 1YNNK 4A3EE 3K7AF 4OIOE 3S17F 5M5XE 1R9TF 2NVXF 3S2HF 2Y0SH 2JA5E 5E17E 4A3FE 3GTJF 4BBRE 3GTME 4A93E 4A3LF 5C4XF 4A3BF 3GTKF 5FJ8F 3GTGE 3HOWE 4YFKE 1Y1VF 4BXXF 2R7ZE 2PPBE 4C3IE 1TWFE 5M3FF 3S16F 3RZOE 2BE5E 5IYBE 2VUMF 4G7HE 3HOVE 1I6HF 2JA7E 2JA6E 4OINE 3M3YF 4Y52E 3I4ME 4C3IF 1TWFF 1ZYRE 3M4OF 2A69E 4JK1E 1TWGE 4A3CE 3CQZE 3H3VF 1TWAE 1I50F 2YU9E 2JA8F 1TWCE 4Y7NE 4A3DF 4LK1E 1TWHE 1Y1WE 2JA7F 3HOVF 4A3IE 2NVQF 4A3GE 5FLME 4QIWH 3H0GE 1HQME 4XSXE 2PMZK 3GTOE 2A6HE 4QIWK 5IYDF 4OIPE 1SMYE 4ZH4E 3S1RF 4BY1E 5M5WE 4A3KF 3HOYF 4A3CF 3HOXE 4A3JE 3FKIE 4MEXE 4OIQE 5D4EE 2B63E 3GTQE 3S1MF 4LLGE 2YU9F 5M5YE 1TWCF 5M3ME 2E2JE 3S1QF 1TWHF 4KN4E 3S2DF 4A3GF 4MQ9E 4A3IF 4A3EF 2NVYE 4XLPE 5M5XF 5FLMF 4BBSE 3RZDE 2JA5F 3EQLE 2O5JE 5IYCE 4A3FF 4BBRF 5C4JE 3PO3E 2R92E 3GTMF 4A3ME 4A93F 4BY1F 4BY7E 3HOXF 4A3JF 2A6EE 3GTGF 2E2HE 3HOWF 3S15E 3HOZE 2R7ZF 1WCME 5M5YF 2E2JF 5IPLE 4G7ZE 3GTLE 5D4CE 3RZOF 3HOUE 5IYBF 3S14E 3RZDF 3S1NE 5IP7E 5IYCF 2A68E 2O5IE
chains in the Genus database with same CATH topology
4A3MF 2JA6F 4Y52F 1IW7E 4OIRE 3WODE 4KMUE 5D4DE 3I4MF 3GTLF 1TWGF 3CQZF 1TWAF 5IP7F 3PO3F 4Y7NF 1Y1WF 3H0GF 4G7OE 5E18E 3GTOF 4XSZE 2NVTF 5TMCE 4LK0E 5M5WF 3FKIF 3GTQF 2B63F 5M3MF 1I3QF 5TMFE 2WAQK 2NVYF 4LJZE 4BBSF 3GTPF 4XLNE 4KN7E 3I4NF 5C4JF 2R92F 4MEYE 4BY7F 3HOZF 2E2HF 3S15F 1SFOF 4Q4ZE 1WCMF 2WB1I 3PO2F 2KRXA 3H3VG 5BYHE 3S14F 3S1NF 1YNJK 3HOUF 5C44F 4YG2E 1I6VE 2CW0E 4C2MF 4Q5SE 4YFNE 5C3EF 4GZYE 2Y0SI 2R93F 4YFXE 1QKLA 4AYBK 5IP9F 1K83F 4X6AF 4C3HF 3HKZK 3DXJE 4C3JF 2E2IF 1YNNK 4OIOE 3K7AF 3S17F 1R9TF 2NVXF 3S2HF 5E17E 3GTJF 4A3LF 5C4XF 4A3BF 3GTKF 5FJ8F 4YFKE 1Y1VF 4BXXF 2PPBE 5M3FF 3S16F 2BE5E 2VUMF 4G7HE 1I6HF 4OINE 3M3YF 4C3IF 1TWFF 1ZYRE 3M4OF 2A69E 4JK1E 1I50F 2JA8F 4A3DF 4LK1E 3HOVF 2JA7F 2NVQF 1HQME 4XSXE 2PMZK 2A6HE 4QIWK 5IYDF 4OIPE 1SMYE 4ZH4E 3S1RF 3HOYF 4A3KF 4A3CF 4MEXE 4OIQE 3S1MF 5D4EE 4LLGE 2YU9F 3S1QF 1TWCF 1TWHF 4KN4E 3S2DF 4A3GF 4MQ9E 4A3IF 4A3EF 4XLPE 5M5XF 5FLMF 2JA5F 3EQLE 2O5JE 4A3FF 4BBRF 3GTMF 4A93F 4BY1F 3HOXF 4A3JF 2A6EE 3GTGF 3HOWF 2R7ZF 5M5YF 2E2JF 5IPLE 4G7ZE 5D4CE 3RZOF 5IYBF 3RZDF 5IYCF 2A68E 2O5IE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A3M F;  2JA6 F;  4Y52 F;  1IW7 E;  4OIR E;  3WOD E;  4KMU E;  5D4D E;  3I4M F;  3GTL F;  1TWG F;  3CQZ F;  1TWA F;  5IP7 F;  3PO3 F;  4Y7N F;  1Y1W F;  3H0G F;  4G7O E;  5E18 E;  3GTO F;  4XSZ E;  2NVT F;  5TMC E;  4LK0 E;  5M5W F;  3FKI F;  3GTQ F;  2B63 F;  5M3M F;  1I3Q F;  5TMF E;  2WAQ K;  2NVY F;  4LJZ E;  4BBS F;  3GTP F;  4XLN E;  4KN7 E;  3I4N F;  5C4J F;  2R92 F;  4MEY E;  4BY7 F;  3HOZ F;  2E2H F;  3S15 F;  1SFO F;  4Q4Z E;  1WCM F;  2WB1 I;  3PO2 F;  3H3V G;  5BYH E;  3S14 F;  3S1N F;  1YNJ K;  3HOU F;  5C44 F;  4YG2 E;  1I6V E;  2CW0 E;  4C2M F;  4Q5S E;  4YFN E;  5C3E F;  4GZY E;  2Y0S I;  2R93 F;  4YFX E;  1QKL A;  4AYB K;  5IP9 F;  1K83 F;  4X6A F;  4C3H F;  3HKZ K;  3DXJ E;  4C3J F;  2E2I F;  1YNN K;  4OIO E;  3K7A F;  3S17 F;  1R9T F;  2NVX F;  3S2H F;  5E17 E;  3GTJ F;  4A3L F;  5C4X F;  4A3B F;  3GTK F;  5FJ8 F;  4YFK E;  1Y1V F;  4BXX F;  2PPB E;  5M3F F;  3S16 F;  2BE5 E;  2VUM F;  4G7H E;  1I6H F;  4OIN E;  3M3Y F;  4C3I F;  1TWF F;  1ZYR E;  3M4O F;  2A69 E;  4JK1 E;  1I50 F;  2JA8 F;  4A3D F;  4LK1 E;  3HOV F;  2JA7 F;  2NVQ F;  1HQM E;  4XSX E;  2PMZ K;  2A6H E;  5IYD F;  4OIP E;  1SMY E;  4ZH4 E;  3S1R F;  3HOY F;  4A3K F;  4A3C F;  4MEX E;  4OIQ E;  3S1M F;  5D4E E;  4LLG E;  2YU9 F;  3S1Q F;  1TWC F;  1TWH F;  4KN4 E;  3S2D F;  4A3G F;  4MQ9 E;  4A3I F;  4A3E F;  4XLP E;  5M5X F;  5FLM F;  2JA5 F;  3EQL E;  2O5J E;  4A3F F;  4BBR F;  3GTM F;  4A93 F;  4BY1 F;  3HOX F;  4A3J F;  2A6E E;  3GTG F;  3HOW F;  2R7Z F;  5M5Y F;  2E2J F;  5IPL E;  4G7Z E;  5D4C E;  3RZO F;  5IYB F;  3RZD F;  5IYC F;  2A68 E;  2O5I E; 
#chains in the Genus database with same CATH topology
 4A3M F;  4C2M E;  2PMZ H;  2JA6 F;  4Y52 F;  1IW7 E;  4OIR E;  3WOD E;  4KMU E;  2R93 E;  5D4D E;  3I4M F;  2NVT E;  3GTL F;  5IP9 E;  1K83 E;  1TWG F;  4X6A E;  3CQZ F;  1TWA F;  5IP7 F;  3PO3 F;  4C3J E;  4Y7N F;  1I3Q E;  1Y1W F;  2E2I E;  3S17 E;  3H0G F;  1R9T E;  3GTP E;  4G7O E;  5E18 E;  3GTO F;  3S2H E;  4XSZ E;  1DZF A;  3I4N E;  3GTJ E;  2NVT F;  5TMC E;  4LK0 E;  5C4X E;  5M5W F;  4A3B E;  3GTK E;  5FJ8 E;  3FKI F;  3GTQ F;  2B63 F;  1SFO E;  2WAQ H;  5M3M F;  5M3F E;  3PO2 E;  1I3Q F;  5TMF E;  2WAQ K;  2NVY F;  4LJZ E;  3S16 E;  4BBS F;  2VUM E;  3GTP F;  4XLN E;  4KN7 E;  3I4N F;  5C44 E;  5C4J F;  2R92 F;  5C3E E;  1I6H E;  4MEY E;  4BY7 F;  3HOZ F;  3M3Y E;  2E2H F;  3S15 F;  1SFO F;  4Q4Z E;  1WCM F;  2WB1 I;  3PO2 F;  3M4O E;  2KRX A;  3H3V G;  5BYH E;  3S14 F;  3S1N F;  1YNJ K;  1I50 E;  4C3H E;  3HOU F;  5C44 F;  4YG2 E;  2JA8 E;  4A3D E;  1I6V E;  2CW0 E;  4C2M F;  4Q5S E;  4YFN E;  5C3E F;  3K7A E;  2NVQ E;  4GZY E;  2Y0S I;  2NVX E;  2R93 F;  4AYB H;  4YFX E;  5IYD E;  1QKL A;  2WB1 H;  4AYB K;  3S1R E;  4A3L E;  5IP9 F;  1K83 F;  3HKZ H;  4A3K E;  3HOY E;  4X6A F;  3S1M E;  4C3H F;  1Y1V E;  3HKZ K;  4BXX E;  3DXJ E;  4C3J F;  3S1Q E;  2E2I F;  3S2D E;  1EIK A;  1YNN K;  4A3E E;  3K7A F;  4OIO E;  3S17 F;  5M5X E;  1R9T F;  2NVX F;  3S2H F;  2Y0S H;  2JA5 E;  5E17 E;  4A3F E;  3GTJ F;  4BBR E;  3GTM E;  4A93 E;  4A3L F;  5C4X F;  4A3B F;  3GTK F;  5FJ8 F;  3GTG E;  3HOW E;  4YFK E;  1Y1V F;  4BXX F;  2R7Z E;  2PPB E;  4C3I E;  1TWF E;  5M3F F;  3S16 F;  3RZO E;  2BE5 E;  5IYB E;  2VUM F;  4G7H E;  3HOV E;  1I6H F;  2JA7 E;  2JA6 E;  4OIN E;  3M3Y F;  4Y52 E;  3I4M E;  4C3I F;  1TWF F;  1ZYR E;  3M4O F;  2A69 E;  4JK1 E;  1TWG E;  4A3C E;  3CQZ E;  3H3V F;  1TWA E;  1I50 F;  2YU9 E;  2JA8 F;  1TWC E;  4Y7N E;  4A3D F;  4LK1 E;  1TWH E;  1Y1W E;  2JA7 F;  3HOV F;  4A3I E;  2NVQ F;  4A3G E;  5FLM E;  4QIW H;  3H0G E;  1HQM E;  4XSX E;  2PMZ K;  3GTO E;  2A6H E;  4QIW K;  5IYD F;  4OIP E;  1SMY E;  4ZH4 E;  3S1R F;  4BY1 E;  5M5W E;  4A3K F;  3HOY F;  4A3C F;  3HOX E;  4A3J E;  3FKI E;  4MEX E;  4OIQ E;  5D4E E;  2B63 E;  3GTQ E;  3S1M F;  4LLG E;  2YU9 F;  5M5Y E;  1TWC F;  5M3M E;  2E2J E;  3S1Q F;  1TWH F;  4KN4 E;  3S2D F;  4A3G F;  4MQ9 E;  4A3I F;  4A3E F;  2NVY E;  4XLP E;  5M5X F;  5FLM F;  4BBS E;  3RZD E;  2JA5 F;  3EQL E;  2O5J E;  5IYC E;  4A3F F;  4BBR F;  5C4J E;  3PO3 E;  2R92 E;  3GTM F;  4A3M E;  4A93 F;  4BY1 F;  4BY7 E;  3HOX F;  4A3J F;  2A6E E;  3GTG F;  2E2H E;  3HOW F;  3S15 E;  3HOZ E;  2R7Z F;  1WCM E;  5M5Y F;  2E2J F;  5IPL E;  4G7Z E;  3GTL E;  5D4C E;  3RZO F;  3HOU E;  5IYB F;  3S14 E;  3RZD F;  3S1N E;  5IP7 E;  5IYC F;  2A68 E;  2O5I E; 
#chains in the Genus database with same CATH homology
 4A3M F;  2JA6 F;  4Y52 F;  1IW7 E;  4OIR E;  3WOD E;  4KMU E;  5D4D E;  3I4M F;  3GTL F;  1TWG F;  3CQZ F;  1TWA F;  5IP7 F;  3PO3 F;  4Y7N F;  1Y1W F;  3H0G F;  4G7O E;  5E18 E;  3GTO F;  4XSZ E;  2NVT F;  5TMC E;  4LK0 E;  5M5W F;  3FKI F;  3GTQ F;  2B63 F;  5M3M F;  1I3Q F;  5TMF E;  2WAQ K;  2NVY F;  4LJZ E;  4BBS F;  3GTP F;  4XLN E;  4KN7 E;  3I4N F;  5C4J F;  2R92 F;  4MEY E;  4BY7 F;  3HOZ F;  2E2H F;  3S15 F;  1SFO F;  4Q4Z E;  1WCM F;  2WB1 I;  3PO2 F;  2KRX A;  3H3V G;  5BYH E;  3S14 F;  3S1N F;  1YNJ K;  3HOU F;  5C44 F;  4YG2 E;  1I6V E;  2CW0 E;  4C2M F;  4Q5S E;  4YFN E;  5C3E F;  4GZY E;  2Y0S I;  2R93 F;  4YFX E;  1QKL A;  4AYB K;  5IP9 F;  1K83 F;  4X6A F;  4C3H F;  3HKZ K;  3DXJ E;  4C3J F;  2E2I F;  1YNN K;  4OIO E;  3K7A F;  3S17 F;  1R9T F;  2NVX F;  3S2H F;  5E17 E;  3GTJ F;  4A3L F;  5C4X F;  4A3B F;  3GTK F;  5FJ8 F;  4YFK E;  1Y1V F;  4BXX F;  2PPB E;  5M3F F;  3S16 F;  2BE5 E;  2VUM F;  4G7H E;  1I6H F;  4OIN E;  3M3Y F;  4C3I F;  1TWF F;  1ZYR E;  3M4O F;  2A69 E;  4JK1 E;  1I50 F;  2JA8 F;  4A3D F;  4LK1 E;  3HOV F;  2JA7 F;  2NVQ F;  1HQM E;  4XSX E;  2PMZ K;  2A6H E;  4QIW K;  5IYD F;  4OIP E;  1SMY E;  4ZH4 E;  3S1R F;  3HOY F;  4A3K F;  4A3C F;  4MEX E;  4OIQ E;  3S1M F;  5D4E E;  4LLG E;  2YU9 F;  3S1Q F;  1TWC F;  1TWH F;  4KN4 E;  3S2D F;  4A3G F;  4MQ9 E;  4A3I F;  4A3E F;  4XLP E;  5M5X F;  5FLM F;  2JA5 F;  3EQL E;  2O5J E;  4A3F F;  4BBR F;  3GTM F;  4A93 F;  4BY1 F;  3HOX F;  4A3J F;  2A6E E;  3GTG F;  3HOW F;  2R7Z F;  5M5Y F;  2E2J F;  5IPL E;  4G7Z E;  5D4C E;  3RZO F;  5IYB F;  3RZD F;  5IYC F;  2A68 E;  2O5I E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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