3J7875

Structures of yeast 80s ribosome-trna complexes in the rotated and non-rotated conformations (class i - non-rotated ribosome with 2 trnas)
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
121
structure length
121
Chain Sequence
KALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRIGYI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 60S ribosomal protein L1
publication title Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations.
pubmed doi rcsb
total genus 13
structure length 121
sequence length 121
ec nomenclature
pdb deposition date 2014-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
75 PF00276 Ribosomal_L23 Ribosomal protein L23
75 PF03939 Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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