3KFDE

Ternary complex of tgf-b1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
108
structure length
108
Chain Sequence
AVKFPQLCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPKCIMKEKKKPGETFFMCSCSSDECNDNIIFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytokine/cytokine receptor
molecule keywords Transforming growth factor beta-1
publication title Ternary complex of transforming growth factor-beta1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily.
pubmed doi rcsb
source organism Homo sapiens
total genus 18
structure length 108
sequence length 108
chains with identical sequence F, G, H
ec nomenclature ec 2.7.11.30: Receptor protein serine/threonine kinase.
pdb deposition date 2009-10-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3kfdE00
1LXHA 2K3GA 2H8UA 2QJAC 2UWRA 1IDLA 1CXNA 2H64C 2BTXA 1MAHF 1RGJA 2ABXA 3FEVA 2MFAA 1ONJA 1ZADA 2HLQA 1W6BA 2GOOC 2UX2A 1KL8A 2H62D 4XJJA 1IDHA 4ZQYA 1V6PA 2CRSA 1LJZA 1HC9A 4HQPF 1F94A 1CDRA 1TXAA 1NYUA 3EBXA 1CVOA 4AEAA 1FF4A 2CDXA 2MUOA 1KBSA 1IKCA 1RL5A 1KBTA 1XT3A 2H62C 3LAQU 1COEA 1PLOA 2BHIA 2CCXA 2QJ9C 1CRFA 1IQ9A 1JBDA 5IMYC 6EBXA 1CCQA 2LA1A 1KC4A 1NTNA 1F8UB 3NH7A 2MJ4A 2MJYA 1B41B 1QKEA 1UG4A 2MHYA 3U74U 4P7UA 4OM5A 1G6MA 1TGXA 4OM4A 2NBTA 1JGKA 1M9ZA 5DU1A 4FAOC 1KFHA 2MUPA 1ES7B 1VB0A 2H64B 1KBAA 2H7ZB 1FASA 2I9BE 3NEQA 4EY8B 5IMTD 1CREA 2GOOB 1QKDA 1CDQA 4BIKB 1ERGA 1IDIA 1REWC 1TXBA 1CDTA 1TFSA 1ABTA 4RUDA 3KFDI 1FSSB 1L4WA 2FD6U 2QC1A 2N99A 4BDTB 1CHVS 1ERAA 1IJCA 4QTIU 2L5SA 2PJYB 1CODA 1HC9B 1MR6A 4LFTA 3PLCA 4FAOE 1IK8A 2X8BB 3KFDE 1CXOA 1KU6B 2QJBC 1BTEA 1HAAA 2LCRA 3BT2U 1DRSA 3HH7A 1LSIA 3BT1U 1YWHA 1HOYA 1JE9A 2MJ0A 4DO8A 3VTSA 2CRTA 3NDSA 1S4YA 1NYSA 1NEAA 2VLWA 1KS6A 1NXBA 1LX5B 1FSCA 1KTZB 1LXGA 2H5FA 4IYEA 3ERAA 1CDSA 2ERAA 1NTXA 1CB9A 1CTXA 2HLRA 1FRAA 2J8BA 2JVEA 1BXPA 1H0JA 3EVSC 5EBXA 2L03A 1QM7A 2CTXA 3QB4B 1IDGA 1NORA 2OFSA 4UY2C 5DO6A 5DZ5A 3U73U 1HAJA 2JQPA 1I02A 2PJYC 1FFJA 2H7ZA 1KXIA
chains in the Genus database with same CATH superfamily
1LXHA 2K3GA 2H8UA 2QJAC 2UWRA 1IDLA 1CXNA 2H64C 2BTXA 1MAHF 1RGJA 2ABXA 3FEVA 2MFAA 1ONJA 1ZADA 2HLQA 1W6BA 2GOOC 2UX2A 1KL8A 2H62D 4XJJA 1IDHA 4ZQYA 1V6PA 2CRSA 1LJZA 1HC9A 4HQPF 1F94A 1CDRA 1TXAA 1NYUA 3EBXA 1CVOA 4AEAA 1FF4A 2CDXA 2MUOA 1KBSA 1IKCA 1RL5A 1KBTA 1XT3A 2H62C 3LAQU 1COEA 1PLOA 2BHIA 2CCXA 2QJ9C 1CRFA 1IQ9A 1JBDA 5IMYC 6EBXA 1CCQA 2LA1A 1KC4A 1NTNA 1F8UB 3NH7A 2MJ4A 2MJYA 1B41B 1QKEA 1UG4A 2MHYA 3U74U 4P7UA 4OM5A 1G6MA 1TGXA 4OM4A 2NBTA 1JGKA 1M9ZA 5DU1A 4FAOC 1KFHA 2MUPA 1ES7B 1VB0A 2H64B 1KBAA 2H7ZB 1FASA 2I9BE 3NEQA 4EY8B 5IMTD 1CREA 2GOOB 1QKDA 1CDQA 4BIKB 1ERGA 1IDIA 1REWC 1TXBA 1CDTA 1TFSA 1ABTA 4RUDA 3KFDI 1FSSB 1L4WA 2FD6U 2QC1A 2N99A 4BDTB 1CHVS 1ERAA 1IJCA 4QTIU 2L5SA 2PJYB 1CODA 1HC9B 1MR6A 4LFTA 3PLCA 4FAOE 1IK8A 2X8BB 3KFDE 1CXOA 1KU6B 2QJBC 1BTEA 1HAAA 2LCRA 3BT2U 1DRSA 3HH7A 1LSIA 3BT1U 1YWHA 1HOYA 1JE9A 2MJ0A 4DO8A 3VTSA 2CRTA 3NDSA 1S4YA 1NYSA 1NEAA 2VLWA 1KS6A 1NXBA 1LX5B 1FSCA 4KSNA 1KTZB 1LXGA 2H5FA 4IYEA 3ERAA 1CDSA 2ERAA 1NTXA 1CB9A 1CTXA 2HLRA 1FRAA 2J8BA 2JVEA 1BXPA 1H0JA 3EVSC 5EBXA 2L03A 1QM7A 2CTXA 3QB4B 1IDGA 1NORA 2OFSA 4UY2C 5DO6A 5DZ5A 3U73U 1HAJA 2JQPA 1I02A 2PJYC 1FFJA 2H7ZA 1KXIA
chains in the Genus database with same CATH topology
1LXHA 2K3GA 2H8UA 2QJAC 2UWRA 1IDLA 1CXNA 2H64C 2BTXA 1MAHF 1RGJA 2ABXA 3FEVA 2MFAA 1ONJA 1ZADA 2HLQA 1W6BA 2GOOC 2UX2A 1KL8A 2H62D 4XJJA 1IDHA 4ZQYA 1V6PA 2CRSA 1LJZA 1HC9A 4HQPF 1F94A 1CDRA 1TXAA 1NYUA 3EBXA 1CVOA 4AEAA 1FF4A 2CDXA 2MUOA 1KBSA 1IKCA 1RL5A 1KBTA 1XT3A 2H62C 3LAQU 1COEA 1PLOA 2BHIA 2CCXA 2QJ9C 1CRFA 1IQ9A 1JBDA 5IMYC 6EBXA 1CCQA 2LA1A 1KC4A 1NTNA 1F8UB 3NH7A 2MJ4A 2MJYA 1B41B 1QKEA 1UG4A 2MHYA 3U74U 4P7UA 4OM5A 1G6MA 1TGXA 4OM4A 2NBTA 1JGKA 1M9ZA 5DU1A 4FAOC 1KFHA 2MUPA 1ES7B 1VB0A 2H64B 1KBAA 2H7ZB 1FASA 2I9BE 3NEQA 4EY8B 5IMTD 1CREA 2GOOB 1QKDA 1CDQA 4BIKB 1ERGA 1IDIA 1REWC 1TXBA 1CDTA 1TFSA 1ABTA 4RUDA 3KFDI 1FSSB 1L4WA 2FD6U 2QC1A 2N99A 4BDTB 1CHVS 1ERAA 1IJCA 4QTIU 2L5SA 2PJYB 1CODA 1HC9B 1MR6A 4LFTA 3PLCA 4FAOE 1IK8A 2X8BB 3KFDE 1CXOA 1KU6B 2QJBC 1BTEA 1HAAA 2LCRA 3BT2U 1DRSA 3HH7A 1LSIA 3BT1U 1YWHA 1HOYA 1JE9A 2MJ0A 4DO8A 3VTSA 2CRTA 3NDSA 1S4YA 1NYSA 1NEAA 2VLWA 1KS6A 1NXBA 1LX5B 1FSCA 4KSNA 1KTZB 1LXGA 2H5FA 4IYEA 3ERAA 1CDSA 2ERAA 1NTXA 1CB9A 1CTXA 2HLRA 1FRAA 2J8BA 2JVEA 1BXPA 1H0JA 3EVSC 5EBXA 2L03A 1QM7A 2CTXA 3QB4B 1IDGA 1NORA 2OFSA 4UY2C 5DO6A 5DZ5A 3U73U 1HAJA 2JQPA 1I02A 2PJYC 1FFJA 2H7ZA 1KXIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LXH A;  2K3G A;  2H8U A;  2QJA C;  2UWR A;  1IDL A;  1CXN A;  2H64 C;  2BTX A;  1MAH F;  1RGJ A;  2ABX A;  3FEV A;  2MFA A;  1ONJ A;  1ZAD A;  2HLQ A;  1W6B A;  2GOO C;  2UX2 A;  1KL8 A;  2H62 D;  4XJJ A;  1IDH A;  4ZQY A;  1V6P A;  2CRS A;  1LJZ A;  1HC9 A;  4HQP F;  1F94 A;  1CDR A;  1TXA A;  1NYU A;  3EBX A;  1CVO A;  4AEA A;  1FF4 A;  2CDX A;  2MUO A;  1KBS A;  1IKC A;  1RL5 A;  1KBT A;  1XT3 A;  2H62 C;  3LAQ U;  1COE A;  1PLO A;  2BHI A;  2CCX A;  2QJ9 C;  1CRF A;  1IQ9 A;  1JBD A;  5IMY C;  6EBX A;  1CCQ A;  2LA1 A;  1KC4 A;  1NTN A;  1F8U B;  3NH7 A;  2MJ4 A;  2MJY A;  1B41 B;  1QKE A;  1UG4 A;  2MHY A;  3U74 U;  4P7U A;  4OM5 A;  1G6M A;  1TGX A;  4OM4 A;  2NBT A;  1JGK A;  1M9Z A;  5DU1 A;  4FAO C;  1KFH A;  2MUP A;  1ES7 B;  1VB0 A;  2H64 B;  1KBA A;  2H7Z B;  1FAS A;  2I9B E;  3NEQ A;  4EY8 B;  5IMT D;  1CRE A;  2GOO B;  1QKD A;  1CDQ A;  4BIK B;  1ERG A;  1IDI A;  1REW C;  1TXB A;  1CDT A;  1TFS A;  1ABT A;  4RUD A;  3KFD I;  1FSS B;  1L4W A;  2FD6 U;  2QC1 A;  2N99 A;  4BDT B;  1CHV S;  1ERA A;  1IJC A;  4QTI U;  2L5S A;  2PJY B;  1COD A;  1HC9 B;  1MR6 A;  4LFT A;  3PLC A;  4FAO E;  1IK8 A;  2X8B B;  3KFD E;  1CXO A;  1KU6 B;  2QJB C;  1BTE A;  1HAA A;  2LCR A;  3BT2 U;  1DRS A;  3HH7 A;  1LSI A;  3BT1 U;  1YWH A;  1HOY A;  1JE9 A;  2MJ0 A;  4DO8 A;  3VTS A;  2CRT A;  3NDS A;  1S4Y A;  1NYS A;  1NEA A;  2VLW A;  1KS6 A;  1NXB A;  1LX5 B;  1FSC A;  1KTZ B;  1LXG A;  2H5F A;  4IYE A;  3ERA A;  1CDS A;  2ERA A;  1NTX A;  1CB9 A;  1CTX A;  2HLR A;  1FRA A;  2J8B A;  2JVE A;  1BXP A;  1H0J A;  3EVS C;  5EBX A;  2L03 A;  1QM7 A;  2CTX A;  3QB4 B;  1IDG A;  1NOR A;  2OFS A;  4UY2 C;  5DO6 A;  5DZ5 A;  3U73 U;  1HAJ A;  2JQP A;  1I02 A;  2PJY C;  1FFJ A;  2H7Z A;  1KXI A; 
#chains in the Genus database with same CATH topology
 1LXH A;  2K3G A;  2H8U A;  2QJA C;  2UWR A;  1IDL A;  1CXN A;  2H64 C;  2BTX A;  1MAH F;  1RGJ A;  2ABX A;  3FEV A;  2MFA A;  1ONJ A;  1ZAD A;  2HLQ A;  1W6B A;  2GOO C;  2UX2 A;  1KL8 A;  2H62 D;  4XJJ A;  1IDH A;  4ZQY A;  1V6P A;  2CRS A;  1LJZ A;  1HC9 A;  4HQP F;  1F94 A;  1CDR A;  1TXA A;  1NYU A;  3EBX A;  1CVO A;  4AEA A;  1FF4 A;  2CDX A;  2MUO A;  1KBS A;  1IKC A;  1RL5 A;  1KBT A;  1XT3 A;  2H62 C;  3LAQ U;  1COE A;  1PLO A;  2BHI A;  2CCX A;  2QJ9 C;  1CRF A;  1IQ9 A;  1JBD A;  5IMY C;  6EBX A;  1CCQ A;  2LA1 A;  1KC4 A;  1NTN A;  1F8U B;  3NH7 A;  2MJ4 A;  2MJY A;  1B41 B;  1QKE A;  1UG4 A;  2MHY A;  3U74 U;  4P7U A;  4OM5 A;  1G6M A;  1TGX A;  4OM4 A;  2NBT A;  1JGK A;  1M9Z A;  5DU1 A;  4FAO C;  1KFH A;  2MUP A;  1ES7 B;  1VB0 A;  2H64 B;  1KBA A;  2H7Z B;  1FAS A;  2I9B E;  3NEQ A;  4EY8 B;  5IMT D;  1CRE A;  2GOO B;  1QKD A;  1CDQ A;  4BIK B;  1ERG A;  1IDI A;  1REW C;  1TXB A;  1CDT A;  1TFS A;  1ABT A;  4RUD A;  3KFD I;  1FSS B;  1L4W A;  2FD6 U;  2QC1 A;  2N99 A;  4BDT B;  1CHV S;  1ERA A;  1IJC A;  4QTI U;  2L5S A;  2PJY B;  1COD A;  1HC9 B;  1MR6 A;  4LFT A;  3PLC A;  4FAO E;  1IK8 A;  2X8B B;  3KFD E;  1CXO A;  1KU6 B;  2QJB C;  1BTE A;  1HAA A;  2LCR A;  3BT2 U;  1DRS A;  3HH7 A;  1LSI A;  3BT1 U;  1YWH A;  1HOY A;  1JE9 A;  2MJ0 A;  4DO8 A;  3VTS A;  2CRT A;  3NDS A;  1S4Y A;  1NYS A;  1NEA A;  2VLW A;  1KS6 A;  1NXB A;  1LX5 B;  1FSC A;  4KSN A;  1KTZ B;  1LXG A;  2H5F A;  4IYE A;  3ERA A;  1CDS A;  2ERA A;  1NTX A;  1CB9 A;  1CTX A;  2HLR A;  1FRA A;  2J8B A;  2JVE A;  1BXP A;  1H0J A;  3EVS C;  5EBX A;  2L03 A;  1QM7 A;  2CTX A;  3QB4 B;  1IDG A;  1NOR A;  2OFS A;  4UY2 C;  5DO6 A;  5DZ5 A;  3U73 U;  1HAJ A;  2JQP A;  1I02 A;  2PJY C;  1FFJ A;  2H7Z A;  1KXI A; 
#chains in the Genus database with same CATH homology
 1LXH A;  2K3G A;  2H8U A;  2QJA C;  2UWR A;  1IDL A;  1CXN A;  2H64 C;  2BTX A;  1MAH F;  1RGJ A;  2ABX A;  3FEV A;  2MFA A;  1ONJ A;  1ZAD A;  2HLQ A;  1W6B A;  2GOO C;  2UX2 A;  1KL8 A;  2H62 D;  4XJJ A;  1IDH A;  4ZQY A;  1V6P A;  2CRS A;  1LJZ A;  1HC9 A;  4HQP F;  1F94 A;  1CDR A;  1TXA A;  1NYU A;  3EBX A;  1CVO A;  4AEA A;  1FF4 A;  2CDX A;  2MUO A;  1KBS A;  1IKC A;  1RL5 A;  1KBT A;  1XT3 A;  2H62 C;  3LAQ U;  1COE A;  1PLO A;  2BHI A;  2CCX A;  2QJ9 C;  1CRF A;  1IQ9 A;  1JBD A;  5IMY C;  6EBX A;  1CCQ A;  2LA1 A;  1KC4 A;  1NTN A;  1F8U B;  3NH7 A;  2MJ4 A;  2MJY A;  1B41 B;  1QKE A;  1UG4 A;  2MHY A;  3U74 U;  4P7U A;  4OM5 A;  1G6M A;  1TGX A;  4OM4 A;  2NBT A;  1JGK A;  1M9Z A;  5DU1 A;  4FAO C;  1KFH A;  2MUP A;  1ES7 B;  1VB0 A;  2H64 B;  1KBA A;  2H7Z B;  1FAS A;  2I9B E;  3NEQ A;  4EY8 B;  5IMT D;  1CRE A;  2GOO B;  1QKD A;  1CDQ A;  4BIK B;  1ERG A;  1IDI A;  1REW C;  1TXB A;  1CDT A;  1TFS A;  1ABT A;  4RUD A;  3KFD I;  1FSS B;  1L4W A;  2FD6 U;  2QC1 A;  2N99 A;  4BDT B;  1CHV S;  1ERA A;  1IJC A;  4QTI U;  2L5S A;  2PJY B;  1COD A;  1HC9 B;  1MR6 A;  4LFT A;  3PLC A;  4FAO E;  1IK8 A;  2X8B B;  3KFD E;  1CXO A;  1KU6 B;  2QJB C;  1BTE A;  1HAA A;  2LCR A;  3BT2 U;  1DRS A;  3HH7 A;  1LSI A;  3BT1 U;  1YWH A;  1HOY A;  1JE9 A;  2MJ0 A;  4DO8 A;  3VTS A;  2CRT A;  3NDS A;  1S4Y A;  1NYS A;  1NEA A;  2VLW A;  1KS6 A;  1NXB A;  1LX5 B;  1FSC A;  4KSN A;  1KTZ B;  1LXG A;  2H5F A;  4IYE A;  3ERA A;  1CDS A;  2ERA A;  1NTX A;  1CB9 A;  1CTX A;  2HLR A;  1FRA A;  2J8B A;  2JVE A;  1BXP A;  1H0J A;  3EVS C;  5EBX A;  2L03 A;  1QM7 A;  2CTX A;  3QB4 B;  1IDG A;  1NOR A;  2OFS A;  4UY2 C;  5DO6 A;  5DZ5 A;  3U73 U;  1HAJ A;  2JQP A;  1I02 A;  2PJY C;  1FFJ A;  2H7Z A;  1KXI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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