The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
125
|
Knots found |
|
sequence length |
332
|
structure length |
331
|
Chain Sequence |
LKHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPLRRNVATDAVMDSPNCIAIDEAENRLHVQKAIMAALV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Structures of N-acetylornithine transcarbamoylase from Xanthomonas campestris complexed with substrates and substrate analogs imply mechanisms for substrate binding and catalysis.
pubmed doi rcsb |
molecule tags |
Transferase
|
source organism |
Xanthomonas campestris pv. campestris
|
molecule keywords |
N-acetylornithine carbamoyltransferase
|
total genus |
125
|
structure length |
331
|
sequence length |
332
|
other databases |
KnotProt 2.0: K +31
|
ec nomenclature |
ec
2.1.3.9: N-acetylornithine carbamoyltransferase. |
pdb deposition date | 2009-12-08 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00185 | OTCace | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain |
A | PF02729 | OTCace_N | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Aspartate/ornithine carbamoyltransferase | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Aspartate/ornithine carbamoyltransferase |