3LA9A

Crystal structure of the trimeric autotransporter adhesin head domain bpaa from burkholderia pseudomallei, iodide phased
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
173
structure length
167
Chain Sequence
STSISSITTNTTNLGNSTAAALGGGATYDPATGAISAPSYTTYNANGTTATNTSVGAAIDNINANGIKYFHANSTDPDSVATGTNSVAIGPNAVANVDYSVAIGSGATTSAAVPVASAFGGFAGSAPIGVFSVGAPGAERQITNVAAGRISAASTDAVNGSQLYATN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Haemagglutinin family protein
publication title Structure of a Burkholderia pseudomallei trimeric autotransporter adhesin head.
pubmed doi rcsb
source organism Burkholderia pseudomallei
total genus 38
structure length 167
sequence length 173
ec nomenclature
pdb deposition date 2010-01-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 3la9A00
2ML2A 1OMJA 1K7GA 3HB2P 3U1RA 2ZJ6A 1P9HA 2Z8ZA 1JIWP 1SATA 3LA9A 1K7QA 1O0QA 1O0TA 1SRPA 2ZJ7A 5CXLA 1GO8P 4I35A 1GO7P 3A70A 1KAPP 1G9KA 1H71P 1OM7A 3NTNA 2QUBA 1OM6A 1AKLA 3S6LA 2AGMA 3LAAA 3ULTA 3WP8A 3HBVP 3HDAP 3A6ZA 3VI1A 5D7WA 1OM8A 5CVWA 2XQHA 2Z8XA 2ZVDA 1K7IA 2YO1A 2QUAA 1SMPA 1AF0A 3HBUP 2YO0A
chains in the Genus database with same CATH superfamily
2ML2A 1OMJA 1K7GA 3HB2P 3U1RA 2ZJ6A 1P9HA 2Z8ZA 1JIWP 1SATA 3LA9A 1K7QA 1O0QA 1O0TA 1SRPA 2ZJ7A 5CXLA 1GO8P 4I35A 1GO7P 3A70A 1KAPP 1G9KA 1H71P 1OM7A 3NTNA 2QUBA 1OM6A 1AKLA 3S6LA 2AGMA 3LAAA 3ULTA 3WP8A 3HBVP 3HDAP 3A6ZA 3VI1A 5D7WA 1OM8A 5CVWA 2XQHA 2Z8XA 4DT5A 2ZVDA 1K7IA 2YO1A 2QUAA 1SMPA 1AF0A 3HBUP 2YO0A
chains in the Genus database with same CATH topology
2ML2A 1OMJA 1K7GA 3HB2P 3U1RA 2ZJ6A 1P9HA 2Z8ZA 1JIWP 1SATA 3LA9A 1K7QA 1O0QA 1O0TA 1SRPA 2ZJ7A 5CXLA 1GO8P 4I35A 1GO7P 3A70A 1KAPP 1G9KA 1H71P 1OM7A 3NTNA 2QUBA 1OM6A 1AKLA 3S6LA 2AGMA 3LAAA 3ULTA 3WP8A 3HBVP 3HDAP 3A6ZA 3VI1A 5D7WA 1OM8A 5CVWA 2XQHA 2Z8XA 2ZVDA 1K7IA 2YO1A 2QUAA 1SMPA 1AF0A 3HBUP 2YO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ML2 A;  1OMJ A;  1K7G A;  3HB2 P;  3U1R A;  2ZJ6 A;  1P9H A;  2Z8Z A;  1JIW P;  1SAT A;  3LA9 A;  1K7Q A;  1O0Q A;  1O0T A;  1SRP A;  2ZJ7 A;  5CXL A;  1GO8 P;  4I35 A;  1GO7 P;  3A70 A;  1KAP P;  1G9K A;  1H71 P;  1OM7 A;  3NTN A;  2QUB A;  1OM6 A;  1AKL A;  3S6L A;  2AGM A;  3LAA A;  3ULT A;  3WP8 A;  3HBV P;  3HDA P;  3A6Z A;  3VI1 A;  5D7W A;  1OM8 A;  5CVW A;  2XQH A;  2Z8X A;  2ZVD A;  1K7I A;  2YO1 A;  2QUA A;  1SMP A;  1AF0 A;  3HBU P;  2YO0 A; 
#chains in the Genus database with same CATH topology
 2ML2 A;  1OMJ A;  1K7G A;  3HB2 P;  3U1R A;  2ZJ6 A;  1P9H A;  2Z8Z A;  1JIW P;  1SAT A;  3LA9 A;  1K7Q A;  1O0Q A;  1O0T A;  1SRP A;  2ZJ7 A;  5CXL A;  1GO8 P;  4I35 A;  1GO7 P;  3A70 A;  1KAP P;  1G9K A;  1H71 P;  1OM7 A;  3NTN A;  2QUB A;  1OM6 A;  1AKL A;  3S6L A;  2AGM A;  3LAA A;  3ULT A;  3WP8 A;  3HBV P;  3HDA P;  3A6Z A;  3VI1 A;  5D7W A;  1OM8 A;  5CVW A;  2XQH A;  2Z8X A;  4DT5 A;  2ZVD A;  1K7I A;  2YO1 A;  2QUA A;  1SMP A;  1AF0 A;  3HBU P;  2YO0 A; 
#chains in the Genus database with same CATH homology
 2ML2 A;  1OMJ A;  1K7G A;  3HB2 P;  3U1R A;  2ZJ6 A;  1P9H A;  2Z8Z A;  1JIW P;  1SAT A;  3LA9 A;  1K7Q A;  1O0Q A;  1O0T A;  1SRP A;  2ZJ7 A;  5CXL A;  1GO8 P;  4I35 A;  1GO7 P;  3A70 A;  1KAP P;  1G9K A;  1H71 P;  1OM7 A;  3NTN A;  2QUB A;  1OM6 A;  1AKL A;  3S6L A;  2AGM A;  3LAA A;  3ULT A;  3WP8 A;  3HBV P;  3HDA P;  3A6Z A;  3VI1 A;  5D7W A;  1OM8 A;  5CVW A;  2XQH A;  2Z8X A;  2ZVD A;  1K7I A;  2YO1 A;  2QUA A;  1SMP A;  1AF0 A;  3HBU P;  2YO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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