3LAQU

Structure-based engineering of species selectivity in the upa-upar interaction
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
274
structure length
258
Chain Sequence
LQCMQCESNQSCLVEECALGQDLCRTTVLREWQDDRELEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCNRPRPYLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQSTERSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCCNYTHCNGGPVLDLQSFPPNGFQCYSCEGNNTLGCSSEEASLINCRGPMNQCLVATGLRSYTVRGCATASWCQGSHVADSFPTHLNVSVSCCHGSGCNSPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase receptor
molecule keywords Urokinase-type plasminogen activator
publication title Structure-based engineering of species selectivity in the interaction between urokinase and its receptor: implication for preclinical cancer therapy.
pubmed doi rcsb
source organism Mus musculus
total genus 56
structure length 258
sequence length 274
chains with identical sequence V
ec nomenclature
pdb deposition date 2010-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3laqU01
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3laqU03
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3laqU02
3KFDI 1HC9A 2MUOA 1ABTA 2JVEA 1IKCA 1FFJA 1CXOA 1CRFA 1IQ9A 2HLQA 5IMTD 1UG4A 3QB4B 1KFHA 3U73U 1REWC 4XJJA 1KBTA 1ONJA 1S4YA 1MAHF 2X8BB 1M9ZA 2CRSA 4HQPF 1HOYA 1CODA 1LX5B 2CRTA 1KBAA 2QC1A 1LXGA 2BHIA 1CXNA 2NBTA 3FEVA 2H62C 1TXBA 1TFSA 2H62D 1KS6A 2PJYC 1DRSA 1CDQA 1F94A 2HLRA 2K3GA 1LSIA 3EBXA 1H0JA 1QKDA 1FASA 1CDTA 1IK8A 2H5FA 1KL8A 1KTZB 2MJYA 2I9BE 2FD6U 1NXBA 1TXAA 2PJYB 4IYEA 2ABXA 1IDLA 1HC9B 2BTXA 1BXPA 5EBXA 4UY2C 2QJ9C 1CVOA 1L4WA 1V6PA 1CHVS 1QKEA 2H8UA 1IJCA 1COEA 2GOOC 5IMYC 1NYUA 1NORA 6EBXA 1QM7A 1NYSA 1JBDA 2CDXA 1KC4A 1RL5A 2MFAA 5DO6A 1IDHA 1NEAA 2UWRA 2L03A 1MR6A 3NDSA 1NTNA 1FF4A 2LCRA 3NH7A 2OFSA 4FAOE 1IDGA 2MHYA 1CTXA 1KU6B 4OM4A 1TGXA 2H7ZA 2QJAC 3PLCA 4OM5A 1LJZA 1ERAA 4RUDA 3ERAA 1ERGA 2ERAA 1NTXA 1VB0A 2MJ0A 2VLWA 4LFTA 1CB9A 3KFDE 2UX2A 2H64C 1IDIA 2MJ4A 3HH7A 4BIKB 1PLOA 2L5SA 3VTSA 4QTIU 4AEAA 5DZ5A 1CREA 1ES7B 1FSSB 1JGKA 2H64B 1CDSA 3U74U 3BT2U 1HAJA 2GOOB 2LA1A 1HAAA 1CDRA 1F8UB 5DU1A 1B41B 1LXHA 2QJBC 4ZQYA 2N99A 2CCXA 2JQPA 1RGJA 1W6BA 1ZADA 4EY8B 3NEQA 1FRAA 1FSCA 1JE9A 1XT3A 4DO8A 4FAOC 3LAQU 2H7ZB 1YWHA 2MUPA 2J8BA 1BTEA 3BT1U 4BDTB 1CCQA 1KBSA 1G6MA 4P7UA 1I02A 3EVSC 2CTXA 1KXIA
chains in the Genus database with same CATH superfamily
3KFDI 1HC9A 2MUOA 1ABTA 2JVEA 1IKCA 1FFJA 1CXOA 1CRFA 1IQ9A 2HLQA 5IMTD 1UG4A 3QB4B 1KFHA 3U73U 1REWC 4XJJA 1KBTA 1ONJA 1S4YA 1MAHF 2X8BB 1M9ZA 2CRSA 4HQPF 1HOYA 1CODA 1LX5B 2CRTA 1KBAA 2QC1A 1LXGA 2BHIA 1CXNA 2NBTA 3FEVA 2H62C 1TXBA 1TFSA 2H62D 1KS6A 2PJYC 1DRSA 1CDQA 1F94A 2HLRA 2K3GA 1LSIA 3EBXA 1H0JA 1QKDA 1FASA 1CDTA 1IK8A 2H5FA 1KL8A 1KTZB 2MJYA 2I9BE 2FD6U 1NXBA 1TXAA 2PJYB 4IYEA 2ABXA 1IDLA 1HC9B 2BTXA 1BXPA 5EBXA 4UY2C 2QJ9C 1CVOA 1L4WA 1V6PA 1CHVS 1QKEA 2H8UA 1IJCA 1COEA 2GOOC 5IMYC 1NYUA 1NORA 6EBXA 1QM7A 1NYSA 1JBDA 2CDXA 1KC4A 1RL5A 2MFAA 5DO6A 1IDHA 1NEAA 2UWRA 2L03A 1MR6A 3NDSA 1NTNA 1FF4A 2LCRA 3NH7A 2OFSA 4FAOE 1IDGA 2MHYA 1CTXA 1KU6B 4OM4A 1TGXA 2H7ZA 2QJAC 3PLCA 4OM5A 1LJZA 1ERAA 4RUDA 3ERAA 1ERGA 2ERAA 1NTXA 1VB0A 2MJ0A 2VLWA 4LFTA 1CB9A 3KFDE 2UX2A 2H64C 1IDIA 2MJ4A 3HH7A 4BIKB 1PLOA 2L5SA 3VTSA 4QTIU 4AEAA 5DZ5A 1CREA 1ES7B 1FSSB 1JGKA 2H64B 1CDSA 3U74U 3BT2U 1HAJA 2GOOB 2LA1A 1HAAA 1CDRA 1F8UB 5DU1A 1B41B 1LXHA 2QJBC 4ZQYA 2N99A 2CCXA 2JQPA 1RGJA 1W6BA 1ZADA 4EY8B 3NEQA 1FRAA 1FSCA 1JE9A 1XT3A 4DO8A 4FAOC 3LAQU 2H7ZB 1YWHA 2MUPA 2J8BA 1BTEA 3BT1U 4BDTB 1CCQA 1KBSA 1G6MA 4P7UA 1I02A 4KSNA 3EVSC 2CTXA 1KXIA
chains in the Genus database with same CATH topology
3KFDI 1HC9A 2MUOA 1ABTA 2JVEA 1IKCA 1FFJA 1CXOA 1CRFA 1IQ9A 2HLQA 5IMTD 1UG4A 3QB4B 1KFHA 3U73U 1REWC 4XJJA 1KBTA 1ONJA 1S4YA 1MAHF 2X8BB 1M9ZA 2CRSA 4HQPF 1HOYA 1CODA 1LX5B 2CRTA 1KBAA 2QC1A 1LXGA 2BHIA 1CXNA 2NBTA 3FEVA 2H62C 1TXBA 1TFSA 2H62D 1KS6A 2PJYC 1DRSA 1CDQA 1F94A 2HLRA 2K3GA 1LSIA 3EBXA 1H0JA 1QKDA 1FASA 1CDTA 1IK8A 2H5FA 1KL8A 1KTZB 2MJYA 2I9BE 2FD6U 1NXBA 1TXAA 2PJYB 4IYEA 2ABXA 1IDLA 1HC9B 2BTXA 1BXPA 5EBXA 4UY2C 2QJ9C 1CVOA 1L4WA 1V6PA 1CHVS 1QKEA 2H8UA 1IJCA 1COEA 2GOOC 5IMYC 1NYUA 1NORA 6EBXA 1QM7A 1NYSA 1JBDA 2CDXA 1KC4A 1RL5A 2MFAA 5DO6A 1IDHA 1NEAA 2UWRA 2L03A 1MR6A 3NDSA 1NTNA 1FF4A 2LCRA 3NH7A 2OFSA 4FAOE 1IDGA 2MHYA 1CTXA 1KU6B 4OM4A 1TGXA 2H7ZA 2QJAC 3PLCA 4OM5A 1LJZA 1ERAA 4RUDA 3ERAA 1ERGA 2ERAA 1NTXA 1VB0A 2MJ0A 2VLWA 4LFTA 1CB9A 3KFDE 2UX2A 2H64C 1IDIA 2MJ4A 3HH7A 4BIKB 1PLOA 2L5SA 3VTSA 4QTIU 4AEAA 5DZ5A 1CREA 1ES7B 1FSSB 1JGKA 2H64B 1CDSA 3U74U 3BT2U 1HAJA 2GOOB 2LA1A 1HAAA 1CDRA 1F8UB 5DU1A 1B41B 1LXHA 2QJBC 4ZQYA 2N99A 2CCXA 2JQPA 1RGJA 1W6BA 1ZADA 4EY8B 3NEQA 1FRAA 1FSCA 1JE9A 1XT3A 4DO8A 4FAOC 3LAQU 2H7ZB 1YWHA 2MUPA 2J8BA 1BTEA 3BT1U 4BDTB 1CCQA 1KBSA 1G6MA 4P7UA 1I02A 4KSNA 3EVSC 2CTXA 1KXIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KFD I;  1HC9 A;  2MUO A;  1ABT A;  2JVE A;  1IKC A;  1FFJ A;  1CXO A;  1CRF A;  1IQ9 A;  2HLQ A;  5IMT D;  1UG4 A;  3QB4 B;  1KFH A;  3U73 U;  1REW C;  4XJJ A;  1KBT A;  1ONJ A;  1S4Y A;  1MAH F;  2X8B B;  1M9Z A;  2CRS A;  4HQP F;  1HOY A;  1COD A;  1LX5 B;  2CRT A;  1KBA A;  2QC1 A;  1LXG A;  2BHI A;  1CXN A;  2NBT A;  3FEV A;  2H62 C;  1TXB A;  1TFS A;  2H62 D;  1KS6 A;  2PJY C;  1DRS A;  1CDQ A;  1F94 A;  2HLR A;  2K3G A;  1LSI A;  3EBX A;  1H0J A;  1QKD A;  1FAS A;  1CDT A;  1IK8 A;  2H5F A;  1KL8 A;  1KTZ B;  2MJY A;  2I9B E;  2FD6 U;  1NXB A;  1TXA A;  2PJY B;  4IYE A;  2ABX A;  1IDL A;  1HC9 B;  2BTX A;  1BXP A;  5EBX A;  4UY2 C;  2QJ9 C;  1CVO A;  1L4W A;  1V6P A;  1CHV S;  1QKE A;  2H8U A;  1IJC A;  1COE A;  2GOO C;  5IMY C;  1NYU A;  1NOR A;  6EBX A;  1QM7 A;  1NYS A;  1JBD A;  2CDX A;  1KC4 A;  1RL5 A;  2MFA A;  5DO6 A;  1IDH A;  1NEA A;  2UWR A;  2L03 A;  1MR6 A;  3NDS A;  1NTN A;  1FF4 A;  2LCR A;  3NH7 A;  2OFS A;  4FAO E;  1IDG A;  2MHY A;  1CTX A;  1KU6 B;  4OM4 A;  1TGX A;  2H7Z A;  2QJA C;  3PLC A;  4OM5 A;  1LJZ A;  1ERA A;  4RUD A;  3ERA A;  1ERG A;  2ERA A;  1NTX A;  1VB0 A;  2MJ0 A;  2VLW A;  4LFT A;  1CB9 A;  3KFD E;  2UX2 A;  2H64 C;  1IDI A;  2MJ4 A;  3HH7 A;  4BIK B;  1PLO A;  2L5S A;  3VTS A;  4QTI U;  4AEA A;  5DZ5 A;  1CRE A;  1ES7 B;  1FSS B;  1JGK A;  2H64 B;  1CDS A;  3U74 U;  3BT2 U;  1HAJ A;  2GOO B;  2LA1 A;  1HAA A;  1CDR A;  1F8U B;  5DU1 A;  1B41 B;  1LXH A;  2QJB C;  4ZQY A;  2N99 A;  2CCX A;  2JQP A;  1RGJ A;  1W6B A;  1ZAD A;  4EY8 B;  3NEQ A;  1FRA A;  1FSC A;  1JE9 A;  1XT3 A;  4DO8 A;  4FAO C;  3LAQ U;  2H7Z B;  1YWH A;  2MUP A;  2J8B A;  1BTE A;  3BT1 U;  4BDT B;  1CCQ A;  1KBS A;  1G6M A;  4P7U A;  1I02 A;  3EVS C;  2CTX A;  1KXI A; 
#chains in the Genus database with same CATH topology
 3KFD I;  1HC9 A;  2MUO A;  1ABT A;  2JVE A;  1IKC A;  1FFJ A;  1CXO A;  1CRF A;  1IQ9 A;  2HLQ A;  5IMT D;  1UG4 A;  3QB4 B;  1KFH A;  3U73 U;  1REW C;  4XJJ A;  1KBT A;  1ONJ A;  1S4Y A;  1MAH F;  2X8B B;  1M9Z A;  2CRS A;  4HQP F;  1HOY A;  1COD A;  1LX5 B;  2CRT A;  1KBA A;  2QC1 A;  1LXG A;  2BHI A;  1CXN A;  2NBT A;  3FEV A;  2H62 C;  1TXB A;  1TFS A;  2H62 D;  1KS6 A;  2PJY C;  1DRS A;  1CDQ A;  1F94 A;  2HLR A;  2K3G A;  1LSI A;  3EBX A;  1H0J A;  1QKD A;  1FAS A;  1CDT A;  1IK8 A;  2H5F A;  1KL8 A;  1KTZ B;  2MJY A;  2I9B E;  2FD6 U;  1NXB A;  1TXA A;  2PJY B;  4IYE A;  2ABX A;  1IDL A;  1HC9 B;  2BTX A;  1BXP A;  5EBX A;  4UY2 C;  2QJ9 C;  1CVO A;  1L4W A;  1V6P A;  1CHV S;  1QKE A;  2H8U A;  1IJC A;  1COE A;  2GOO C;  5IMY C;  1NYU A;  1NOR A;  6EBX A;  1QM7 A;  1NYS A;  1JBD A;  2CDX A;  1KC4 A;  1RL5 A;  2MFA A;  5DO6 A;  1IDH A;  1NEA A;  2UWR A;  2L03 A;  1MR6 A;  3NDS A;  1NTN A;  1FF4 A;  2LCR A;  3NH7 A;  2OFS A;  4FAO E;  1IDG A;  2MHY A;  1CTX A;  1KU6 B;  4OM4 A;  1TGX A;  2H7Z A;  2QJA C;  3PLC A;  4OM5 A;  1LJZ A;  1ERA A;  4RUD A;  3ERA A;  1ERG A;  2ERA A;  1NTX A;  1VB0 A;  2MJ0 A;  2VLW A;  4LFT A;  1CB9 A;  3KFD E;  2UX2 A;  2H64 C;  1IDI A;  2MJ4 A;  3HH7 A;  4BIK B;  1PLO A;  2L5S A;  3VTS A;  4QTI U;  4AEA A;  5DZ5 A;  1CRE A;  1ES7 B;  1FSS B;  1JGK A;  2H64 B;  1CDS A;  3U74 U;  3BT2 U;  1HAJ A;  2GOO B;  2LA1 A;  1HAA A;  1CDR A;  1F8U B;  5DU1 A;  1B41 B;  1LXH A;  2QJB C;  4ZQY A;  2N99 A;  2CCX A;  2JQP A;  1RGJ A;  1W6B A;  1ZAD A;  4EY8 B;  3NEQ A;  1FRA A;  1FSC A;  1JE9 A;  1XT3 A;  4DO8 A;  4FAO C;  3LAQ U;  2H7Z B;  1YWH A;  2MUP A;  2J8B A;  1BTE A;  3BT1 U;  4BDT B;  1CCQ A;  1KBS A;  1G6M A;  4P7U A;  1I02 A;  4KSN A;  3EVS C;  2CTX A;  1KXI A; 
#chains in the Genus database with same CATH homology
 3KFD I;  1HC9 A;  2MUO A;  1ABT A;  2JVE A;  1IKC A;  1FFJ A;  1CXO A;  1CRF A;  1IQ9 A;  2HLQ A;  5IMT D;  1UG4 A;  3QB4 B;  1KFH A;  3U73 U;  1REW C;  4XJJ A;  1KBT A;  1ONJ A;  1S4Y A;  1MAH F;  2X8B B;  1M9Z A;  2CRS A;  4HQP F;  1HOY A;  1COD A;  1LX5 B;  2CRT A;  1KBA A;  2QC1 A;  1LXG A;  2BHI A;  1CXN A;  2NBT A;  3FEV A;  2H62 C;  1TXB A;  1TFS A;  2H62 D;  1KS6 A;  2PJY C;  1DRS A;  1CDQ A;  1F94 A;  2HLR A;  2K3G A;  1LSI A;  3EBX A;  1H0J A;  1QKD A;  1FAS A;  1CDT A;  1IK8 A;  2H5F A;  1KL8 A;  1KTZ B;  2MJY A;  2I9B E;  2FD6 U;  1NXB A;  1TXA A;  2PJY B;  4IYE A;  2ABX A;  1IDL A;  1HC9 B;  2BTX A;  1BXP A;  5EBX A;  4UY2 C;  2QJ9 C;  1CVO A;  1L4W A;  1V6P A;  1CHV S;  1QKE A;  2H8U A;  1IJC A;  1COE A;  2GOO C;  5IMY C;  1NYU A;  1NOR A;  6EBX A;  1QM7 A;  1NYS A;  1JBD A;  2CDX A;  1KC4 A;  1RL5 A;  2MFA A;  5DO6 A;  1IDH A;  1NEA A;  2UWR A;  2L03 A;  1MR6 A;  3NDS A;  1NTN A;  1FF4 A;  2LCR A;  3NH7 A;  2OFS A;  4FAO E;  1IDG A;  2MHY A;  1CTX A;  1KU6 B;  4OM4 A;  1TGX A;  2H7Z A;  2QJA C;  3PLC A;  4OM5 A;  1LJZ A;  1ERA A;  4RUD A;  3ERA A;  1ERG A;  2ERA A;  1NTX A;  1VB0 A;  2MJ0 A;  2VLW A;  4LFT A;  1CB9 A;  3KFD E;  2UX2 A;  2H64 C;  1IDI A;  2MJ4 A;  3HH7 A;  4BIK B;  1PLO A;  2L5S A;  3VTS A;  4QTI U;  4AEA A;  5DZ5 A;  1CRE A;  1ES7 B;  1FSS B;  1JGK A;  2H64 B;  1CDS A;  3U74 U;  3BT2 U;  1HAJ A;  2GOO B;  2LA1 A;  1HAA A;  1CDR A;  1F8U B;  5DU1 A;  1B41 B;  1LXH A;  2QJB C;  4ZQY A;  2N99 A;  2CCX A;  2JQP A;  1RGJ A;  1W6B A;  1ZAD A;  4EY8 B;  3NEQ A;  1FRA A;  1FSC A;  1JE9 A;  1XT3 A;  4DO8 A;  4FAO C;  3LAQ U;  2H7Z B;  1YWH A;  2MUP A;  2J8B A;  1BTE A;  3BT1 U;  4BDT B;  1CCQ A;  1KBS A;  1G6M A;  4P7U A;  1I02 A;  4KSN A;  3EVS C;  2CTX A;  1KXI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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