3LQXA

Srp ribonucleoprotein core complexed with cobalt hexammine
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna/rna binding protein
molecule keywords Signal recognition particle protein
publication title Structural and Energetic Analysis of Metal Ions Essential to SRP Signal Recognition Domain Assembly
pubmed rcsb
source organism Escherichia coli
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2010-02-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 3lqxA00
1MFQC 1HQ1A 5GAHi 2PXEA 2V3CC 1QB2A 2PXTA 2FFHA 1DULA 2PXDA 5GAGi 2XXAA 2JQEA 2PXFA 2PXBA 2PXQA 2PXKA 3KL4A 3LQXA 2PXLA 2PXUA 3DM5A 3NDBB 2PXVA 2PXPA 1QZXA
chains in the Genus database with same CATH superfamily
1WH6A 4GQMA 5DRTA 1RPEL 4Z59A 3OQMA 4DE8A 5DRYA 2XXAA 2KEKA 3PXPA 3CLCA 4MCXA 2L49A 2ICPA 3B7HA 1MFQC 2PUEA 3R09A 2KPJA 2LYLA 4Z5CA 2IU7A 2AWIA 5GAGi 2YBDA 1X57A 3FYAA 3GUUA 5A7LA 2PE5A 5DSXA 1QQBA 3G5GA 2PXUA 3L1PA 2LYJA 1UTXA 3TFLA 2PXTA 2H8RA 2PXDA 3OP9A 1QP7A 3VK0A 2IUOA 2O49A 3NZLA 4ER3A 1UXDA 1QP0A 2KEIA 5JUWA 1QB2A 2AXUA 3MLFA 4ER0A 3ZHIA 2CSFA 2HSGA 1JFTA 3HZIB 2ODRD 4X4DA 2BNNA 5DTRA 1POUA 4I6RA 3TELA 1UXCA 2WIUB 1XWRA 1ZPQA 1DULA 1Y9QA 4EKIA 3GBFA 1ZUGA 1PRUA 2PUGA 2PXBA 2PXQA 2PUDA 3A9ZA 2LYSA 2BNOA 1WH8A 2BNMA 1QZXA 4GHJA 4Z5HA 2VEOA 3O9XA 2FFHA 1PERL 1JWLA 4JQDA 2JVLA 3FYMA 2M4HA 1RIOA 3KZ3A 4X4EA 2LLWA 4Z5DA 2OR1L 2O4AA 3UWPA 2LCVA 3OQNA 2XXPA 5DTQA 2PXLA 1IC8A 1WIZA 2PUCA 1WETA 4J1XA 3BD1A 3CECA 3JXBC 1BDIA 2HCSA 3IVPA 1JFSA 1LMB3 4FBIA 4FN3A 1R63A 3GZCA 4ER7A 3LFPA 4I6UA 3NDBB 2HINA 3OKZA 3RZZA 1EFAA 3ZPXA 3GN5B 3ME5A 1ADRA 2MQKA 1BDHA 4EKGA 1E3OC 2A6CA 3QOWA 3ZHMA 3OQOA 4X4IA 4YG1A 1SQ8A 2MXDA 2LNMA 3DM5A 3SX0A 2PXPA 1OSLA 4JCXA 2GZUA 2V3CC 3F52A 4OB4A 2PPXA 3R1FA 3GZDC 4YBAA 3EUSA 1LCDA 2J7WA 3F6WA 2KZ8A 3G7DA 2CROA 4IA8A 2PIJA 1PNRA 2LYPA 2LYRA 3KXAA 2ICTA 1R69A 2BJCA 3ZKCA 2IVGA 4X4HA 4I6TA 2IVQA 4X4BA 4I8TA 1B0NA 2EWTA 1Y7YA 4HRAA 2R1JL 3A9YA 1ZZ6A 3SCGA 4MCTA 2AXZA 2GRLA 1S7EA 4DE9A 3SCHA 1QQAA 1NERA 1L1MA 3OMTA 4F8DA 3SCFA 3KJXA 1YSEA 2L1PA 3G0TA 5DTMA 1RZRA 1DWKA 4X4GA 4Y42A 2LLVA 3CROL 2PUFA 4PU8A 2JQEA 1JH9A 2LYQA 1ZZ9A 1HF0A 1RZSA 3GZDA 3QF3A 4EK9A 4EQZA 1LCCA 1ZAYA 3QWGA 4PU3C 4YARA 2PUAA 3KL4A 3LQXA 2AUWA 1NW3A 3S8QA 2KEJA 4PU4C 1LLIA 4O8BA 2J7UA 4X4CA 3QQ6A 3LISA 1HQ1A 3H5TA 1ZZ8A 2IV1A 4YG4A 3FMYA 2XJ3A 2XSDC 1AU7A 1U2ZA 2PXFA 5DT2A 3OWQA 4ER6A 1O4XA 1X2LA 2PXKA 2HCNA 1QP4A 3NXHA 1ZZ7A 3JXDL 1GT0C 4YG7B 1DW9A 1LQCA 4EZIA 2PUBA 4NDWA 1OCTC 2AW6A 2MEZA 4X4FA 1PRVA 3U3WA 1VPWA 2GRMA 3TRBA 2L8NA 2LYKA 3BS3A 3D1NI 4PU7A 3UFDA 3QYXA 4Z58A 5K98B 2XI8A 3QOXA 3MEJA 3SR4A 2O38A 3GN5A 3NROA 3JXCL 4ER5A 2JCGA 3VWSA 2OFYA 2WUSR 1QPZA 5GAHi 2EF8A 1ZVVA 2IVBA 2XXQA 2R63A 1ZZCA 4IWRA 1CQTA 2B5AA 2FJRA 1NEQA 3TEPA 4JCYA 1PRAA 3A9XA 2PXVA 3BDNA 2XCJA 3PE5A 2AXVA 2PXEA 3DNVB 1RZRD 4IVZA 3F51A 4OBMA 4WVLA 4J1WA 3QFIA 3M9LA 1ZS4A 1CJGA 2D5VA 2EBYA 4Q2JA 2HFZA 1ZZBA 2XIUA
chains in the Genus database with same CATH topology
1MFQC 1HQ1A 5GAHi 2PXEA 2V3CC 1QB2A 2PXTA 2FFHA 1DULA 2PXDA 5GAGi 2XXAA 2JQEA 2PXFA 2PXBA 2PXQA 2PXKA 3KL4A 3LQXA 2PXLA 2PXUA 3DM5A 3NDBB 2PXVA 2PXPA 1QZXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MFQ C;  1HQ1 A;  5GAH i;  2PXE A;  2V3C C;  1QB2 A;  2PXT A;  2FFH A;  1DUL A;  2PXD A;  5GAG i;  2XXA A;  2JQE A;  2PXF A;  2PXB A;  2PXQ A;  2PXK A;  3KL4 A;  3LQX A;  2PXL A;  2PXU A;  3DM5 A;  3NDB B;  2PXV A;  2PXP A;  1QZX A; 
#chains in the Genus database with same CATH topology
 1WH6 A;  4GQM A;  5DRT A;  1RPE L;  4Z59 A;  3OQM A;  4DE8 A;  5DRY A;  2XXA A;  2KEK A;  3PXP A;  3CLC A;  4MCX A;  2L49 A;  2ICP A;  3B7H A;  1MFQ C;  2PUE A;  3R09 A;  2KPJ A;  2LYL A;  4Z5C A;  2IU7 A;  2AWI A;  5GAG i;  2YBD A;  1X57 A;  3FYA A;  3GUU A;  5A7L A;  2PE5 A;  5DSX A;  1QQB A;  3G5G A;  2PXU A;  3L1P A;  2LYJ A;  1UTX A;  3TFL A;  2PXT A;  2H8R A;  2PXD A;  3OP9 A;  1QP7 A;  3VK0 A;  2IUO A;  2O49 A;  3NZL A;  4ER3 A;  1UXD A;  1QP0 A;  2KEI A;  5JUW A;  1QB2 A;  2AXU A;  3MLF A;  4ER0 A;  3ZHI A;  2CSF A;  2HSG A;  1JFT A;  3HZI B;  2ODR D;  4X4D A;  2BNN A;  5DTR A;  1POU A;  4I6R A;  3TEL A;  1UXC A;  2WIU B;  1XWR A;  1ZPQ A;  1DUL A;  1Y9Q A;  4EKI A;  3GBF A;  1ZUG A;  1PRU A;  2PUG A;  2PXB A;  2PXQ A;  2PUD A;  3A9Z A;  2LYS A;  2BNO A;  1WH8 A;  2BNM A;  1QZX A;  4GHJ A;  4Z5H A;  2VEO A;  3O9X A;  2FFH A;  1PER L;  1JWL A;  4JQD A;  2JVL A;  3FYM A;  2M4H A;  1RIO A;  3KZ3 A;  4X4E A;  2LLW A;  4Z5D A;  2OR1 L;  2O4A A;  3UWP A;  2LCV A;  3OQN A;  2XXP A;  5DTQ A;  2PXL A;  1IC8 A;  1WIZ A;  2PUC A;  1WET A;  4J1X A;  3BD1 A;  3CEC A;  3JXB C;  1BDI A;  2HCS A;  3IVP A;  1JFS A;  1LMB 3;  4FBI A;  4FN3 A;  1R63 A;  3GZC A;  4ER7 A;  3LFP A;  4I6U A;  3NDB B;  2HIN A;  3OKZ A;  3RZZ A;  1EFA A;  3ZPX A;  3GN5 B;  3ME5 A;  1ADR A;  2MQK A;  1BDH A;  4EKG A;  1E3O C;  2A6C A;  3QOW A;  3ZHM A;  3OQO A;  4X4I A;  4YG1 A;  1SQ8 A;  2MXD A;  2LNM A;  3DM5 A;  3SX0 A;  2PXP A;  1OSL A;  4JCX A;  2GZU A;  2V3C C;  3F52 A;  4OB4 A;  2PPX A;  3R1F A;  3GZD C;  4YBA A;  3EUS A;  1LCD A;  2J7W A;  3F6W A;  2KZ8 A;  3G7D A;  2CRO A;  4IA8 A;  2PIJ A;  1PNR A;  2LYP A;  2LYR A;  3KXA A;  2ICT A;  1R69 A;  2BJC A;  3ZKC A;  2IVG A;  4X4H A;  4I6T A;  2IVQ A;  4X4B A;  4I8T A;  1B0N A;  2EWT A;  1Y7Y A;  4HRA A;  2R1J L;  3A9Y A;  1ZZ6 A;  3SCG A;  4MCT A;  2AXZ A;  2GRL A;  1S7E A;  4DE9 A;  3SCH A;  1QQA A;  1NER A;  1L1M A;  3OMT A;  4F8D A;  3SCF A;  3KJX A;  1YSE A;  2L1P A;  3G0T A;  5DTM A;  1RZR A;  1DWK A;  4X4G A;  4Y42 A;  2LLV A;  3CRO L;  2PUF A;  4PU8 A;  2JQE A;  1JH9 A;  2LYQ A;  1ZZ9 A;  1HF0 A;  1RZS A;  3GZD A;  3QF3 A;  4EK9 A;  4EQZ A;  1LCC A;  1ZAY A;  3QWG A;  4PU3 C;  4YAR A;  2PUA A;  3KL4 A;  3LQX A;  2AUW A;  1NW3 A;  3S8Q A;  2KEJ A;  4PU4 C;  1LLI A;  4O8B A;  2J7U A;  4X4C A;  3QQ6 A;  3LIS A;  1HQ1 A;  3H5T A;  1ZZ8 A;  2IV1 A;  4YG4 A;  3FMY A;  2XJ3 A;  2XSD C;  1AU7 A;  1U2Z A;  2PXF A;  5DT2 A;  3OWQ A;  4ER6 A;  1O4X A;  1X2L A;  2PXK A;  2HCN A;  1QP4 A;  3NXH A;  1ZZ7 A;  3JXD L;  1GT0 C;  4YG7 B;  1DW9 A;  1LQC A;  4EZI A;  2PUB A;  4NDW A;  1OCT C;  2AW6 A;  2MEZ A;  4X4F A;  1PRV A;  3U3W A;  1VPW A;  2GRM A;  3TRB A;  2L8N A;  2LYK A;  3BS3 A;  3D1N I;  4PU7 A;  3UFD A;  3QYX A;  4Z58 A;  5K98 B;  2XI8 A;  3QOX A;  3MEJ A;  3SR4 A;  2O38 A;  3GN5 A;  3NRO A;  3JXC L;  4ER5 A;  2JCG A;  3VWS A;  2OFY A;  2WUS R;  1QPZ A;  5GAH i;  2EF8 A;  1ZVV A;  2IVB A;  2XXQ A;  2R63 A;  1ZZC A;  4IWR A;  1CQT A;  2B5A A;  2FJR A;  1NEQ A;  3TEP A;  4JCY A;  1PRA A;  3A9X A;  2PXV A;  3BDN A;  2XCJ A;  3PE5 A;  2AXV A;  2PXE A;  3DNV B;  1RZR D;  4IVZ A;  3F51 A;  4OBM A;  4WVL A;  4J1W A;  3QFI A;  3M9L A;  1ZS4 A;  1CJG A;  2D5V A;  2EBY A;  4Q2J A;  2HFZ A;  1ZZB A;  2XIU A; 
#chains in the Genus database with same CATH homology
 1MFQ C;  1HQ1 A;  5GAH i;  2PXE A;  2V3C C;  1QB2 A;  2PXT A;  2FFH A;  1DUL A;  2PXD A;  5GAG i;  2XXA A;  2JQE A;  2PXF A;  2PXB A;  2PXQ A;  2PXK A;  3KL4 A;  3LQX A;  2PXL A;  2PXU A;  3DM5 A;  3NDB B;  2PXV A;  2PXP A;  1QZX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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