3MJ0A

Crystal structure of drosophia ago-paz domain in complex with 3'-end 2'-o-methylated rna
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
118
structure length
118
Chain Sequence
SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDGKKVTIASYFHSRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Rna/rna binding protein
molecule keywords Protein argonaute-2
publication title Crystal Structure of drosophila Ago2 PAZ domain in complex with 3'-end 2'-O-methylated RNA
rcsb
source organism Drosophila melanogaster
total genus 23
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2010-04-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.260.10 Mainly Beta Beta Complex paz domain paz domain 3mj0A00
4NHAA 2L5CA 4KREA 3O6EX 4Z4EA 3MJ0A 5T7BA 4NH6A 4NH3A 3O3IX 4W5TA 4W5NA 4KRFA 1R4KA 4NGDA 5JS1A 2FFLA 4NH5A 4NGGA 3O7XA 2QVWA 1R6ZA 3O7VX 4W5QA 4NGBA 1T2RA 3QIRA 4F3TA 1T2SA 5JS2A 4Z4FA 4NGCA 1SI2A 2XFMA 1SI3A 4Z4GA 2L5DA 1VYNA 4NGFA 5KI6A 4Z4CA 4Z4IA 4Z4HA 4W5OA 4OLAA 4OLBA 4W5RA
chains in the Genus database with same CATH superfamily
4NHAA 2L5CA 4KREA 3O6EX 4Z4EA 3MJ0A 5T7BA 4NH6A 4NH3A 3O3IX 3DLHA 4W5TA 3HM9A 4W5NA 4KRFA 1R4KA 2BZEA 3HVRA 4NGDA 3HK2A 1Z25A 5JS1A 2FFLA 4NH5A 4NGGA 1U04A 3O7XA 3DLBA 2QVWA 1R6ZA 2DB9A 3O7VX 4W5QA 4NGBA 3HO1A 1Z26A 3QIRA 1T2RA 4L1UA 4F3TA 1T2SA 3HJFA 5JS2A 3F73A 4Z4FA 4NGCA 1SI2A 2XFMA 1SI3A 4Z4GA 3DA5A 2L5DA 1VYNA 4L1PA 4NGFA 5KI6A 3U1UA 4Z4CA 4Z4IA 4Z4HA 4W5OA 4OLAA 4OLBA 4W5RA
chains in the Genus database with same CATH topology
4NHAA 2L5CA 4KREA 3O6EX 4Z4EA 3MJ0A 5T7BA 4NH6A 4NH3A 3O3IX 3DLHA 4W5TA 3HM9A 4W5NA 4KRFA 1R4KA 2BZEA 3HVRA 4NGDA 3HK2A 1Z25A 5JS1A 2FFLA 4NH5A 4NGGA 1U04A 3O7XA 3DLBA 2QVWA 1R6ZA 2DB9A 3O7VX 4W5QA 4NGBA 3HO1A 1Z26A 3QIRA 1T2RA 4L1UA 4F3TA 1T2SA 3HJFA 5JS2A 3F73A 4Z4FA 4NGCA 1SI2A 2XFMA 1SI3A 4Z4GA 3DA5A 2L5DA 1VYNA 4L1PA 4NGFA 5KI6A 3U1UA 4Z4CA 4Z4IA 4Z4HA 4W5OA 4OLAA 4OLBA 4W5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NHA A;  2L5C A;  4KRE A;  3O6E X;  4Z4E A;  3MJ0 A;  5T7B A;  4NH6 A;  4NH3 A;  3O3I X;  4W5T A;  4W5N A;  4KRF A;  1R4K A;  4NGD A;  5JS1 A;  2FFL A;  4NH5 A;  4NGG A;  3O7X A;  2QVW A;  1R6Z A;  3O7V X;  4W5Q A;  4NGB A;  1T2R A;  3QIR A;  4F3T A;  1T2S A;  5JS2 A;  4Z4F A;  4NGC A;  1SI2 A;  2XFM A;  1SI3 A;  4Z4G A;  2L5D A;  1VYN A;  4NGF A;  5KI6 A;  4Z4C A;  4Z4I A;  4Z4H A;  4W5O A;  4OLA A;  4OLB A;  4W5R A; 
#chains in the Genus database with same CATH topology
 4NHA A;  2L5C A;  4KRE A;  3O6E X;  4Z4E A;  3MJ0 A;  5T7B A;  4NH6 A;  4NH3 A;  3O3I X;  3DLH A;  4W5T A;  3HM9 A;  4W5N A;  4KRF A;  1R4K A;  2BZE A;  3HVR A;  4NGD A;  3HK2 A;  1Z25 A;  5JS1 A;  2FFL A;  4NH5 A;  4NGG A;  1U04 A;  3O7X A;  3DLB A;  2QVW A;  1R6Z A;  2DB9 A;  3O7V X;  4W5Q A;  4NGB A;  3HO1 A;  1Z26 A;  3QIR A;  1T2R A;  4L1U A;  4F3T A;  1T2S A;  3HJF A;  5JS2 A;  3F73 A;  4Z4F A;  4NGC A;  1SI2 A;  2XFM A;  1SI3 A;  4Z4G A;  3DA5 A;  2L5D A;  1VYN A;  4L1P A;  4NGF A;  5KI6 A;  3U1U A;  4Z4C A;  4Z4I A;  4Z4H A;  4W5O A;  4OLA A;  4OLB A;  4W5R A; 
#chains in the Genus database with same CATH homology
 4NHA A;  2L5C A;  4KRE A;  3O6E X;  4Z4E A;  3MJ0 A;  5T7B A;  4NH6 A;  4NH3 A;  3O3I X;  3DLH A;  4W5T A;  3HM9 A;  4W5N A;  4KRF A;  1R4K A;  2BZE A;  3HVR A;  4NGD A;  3HK2 A;  1Z25 A;  5JS1 A;  2FFL A;  4NH5 A;  4NGG A;  1U04 A;  3O7X A;  3DLB A;  2QVW A;  1R6Z A;  2DB9 A;  3O7V X;  4W5Q A;  4NGB A;  3HO1 A;  1Z26 A;  3QIR A;  1T2R A;  4L1U A;  4F3T A;  1T2S A;  3HJF A;  5JS2 A;  3F73 A;  4Z4F A;  4NGC A;  1SI2 A;  2XFM A;  1SI3 A;  4Z4G A;  3DA5 A;  2L5D A;  1VYN A;  4L1P A;  4NGF A;  5KI6 A;  3U1U A;  4Z4C A;  4Z4I A;  4Z4H A;  4W5O A;  4OLA A;  4OLB A;  4W5R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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