3ODCA

Human parp-1 zinc finger 2 (zn2) bound to dna
Total Genus 25
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
93
structure length
93
Chain Sequence
TLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein/dna
molecule keywords Poly [ADP-ribose] polymerase 1
publication title Crystal Structures of Poly(ADP-ribose) Polymerase-1 (PARP-1) Zinc Fingers Bound to DNA: STRUCTURAL AND FUNCTIONAL INSIGHTS INTO DNA-DEPENDENT PARP-1 ACTIVITY.
pubmed doi rcsb
source organism Homo sapiens
total genus 25
structure length 93
sequence length 93
chains with identical sequence B
ec nomenclature ec 2.4.2.30: NAD(+) ADP-ribosyltransferase.
pdb deposition date 2010-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00645 zf-PARP Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1740.10 Alpha Beta 2-Layer Sandwich first zn-finger domain of poly(adp-ribose) polymerase-1 Zinc finger, PARP-type 3odcA00
4OQAA 4AV1A 4DQYA 3ODEA 2DMJA 4OQBA 2N8AA 2L31A 1V9XA 3OD8A 1UW0A 2CS2A 3ODAA 2L30A 3ODCA 4OPXA
chains in the Genus database with same CATH superfamily
3ODEA 2L30A 3J80a 3J7A3 3ODCA 4AV1A 4OQBA 5FLXa 1V9XA 3OD8A 2CS2A 2N8AA 4OQAA 2DMJA 3J81a 5LL6e 4OPXA 4DQYA 5IT9a 5A2Qa 2L31A 1UW0A 3JAMa 3ODAA
chains in the Genus database with same CATH topology
4OQAA 4AV1A 4DQYA 3ODEA 2DMJA 4OQBA 2N8AA 2L31A 1V9XA 3OD8A 1UW0A 2CS2A 3ODAA 2L30A 3ODCA 4OPXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OQA A;  4AV1 A;  4DQY A;  3ODE A;  2DMJ A;  4OQB A;  2N8A A;  2L31 A;  1V9X A;  3OD8 A;  1UW0 A;  2CS2 A;  3ODA A;  2L30 A;  3ODC A;  4OPX A; 
#chains in the Genus database with same CATH topology
 3ODE A;  2L30 A;  3J80 a;  3J7A 3;  3ODC A;  4AV1 A;  4OQB A;  5FLX a;  1V9X A;  3OD8 A;  2CS2 A;  2N8A A;  4OQA A;  2DMJ A;  3J81 a;  5LL6 e;  4OPX A;  4DQY A;  5IT9 a;  5A2Q a;  2L31 A;  1UW0 A;  3JAM a;  3ODA A; 
#chains in the Genus database with same CATH homology
 4OQA A;  4AV1 A;  4DQY A;  3ODE A;  2DMJ A;  4OQB A;  2N8A A;  2L31 A;  1V9X A;  3OD8 A;  1UW0 A;  2CS2 A;  3ODA A;  2L30 A;  3ODC A;  4OPX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...