3OG8A

Crystal structure of human rig-i ctd bound to a 14-bp blunt-ended dsrna
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
126
structure length
126
Chain Sequence
KENKKLLCRKCKALACYTADVRVIEESHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSKLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/rna
molecule keywords ATP-dependent RNA helicase DDX58
publication title Crystal structure of RIG-I C-terminal domain bound to blunt-ended double-strand RNA without 5' triphosphate.
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 126
sequence length 126
chains with identical sequence B
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2010-08-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11648 RIG-I_C-RD C-terminal domain of RIG-I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.30 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 3og8A00
2YKGA 2QFDA 4BPBA 4AY2A 5F98A 2RQAA 5F9HA 3ZD7A 3LRRA 2RQBA 2W4RA 2QFBA 3ZD6A 3LRNA 3NCUA 5F9FA 5E3HA 3OG8A 4A2VA 3EQTA 2RMJA 3GA3A 4A2XA
chains in the Genus database with same CATH superfamily
2LOYA 3E0MA 2YKGA 2K8DA 3HCHA 2QFDA 4BPBA 4AY2A 2HR9A 4V30A 5F98A 3HCJA 2RQAA 3HCIA 4CI1B 5F9HA 3ZD7A 3LRRA 2RQBA 2W4RA 3DJMA 1FWQA 4CI2B 3HCGA 2KZNA 2KV1A 3MAOA 1H7YA 2QFBA 3E0OA 3ZD6A 2LVLA 3LRNA 4V31A 1HXRA 4TZUA 4TZ4C 3NCUA 4V2YA 4TZCA 5F9FA 4CI3B 5E3HA 2KWBA 3OG8A 3FACA 4A2VA 5AMHA 1L1DA 2RMJA 3GA3A 3P3KA 4V2ZA 3WX1A 3EQTA 4A2XA 2FU5A 3CXKA 1H6QA 3CEZA 1TXJA 3EBMA 3WX2A 1YZ1A
chains in the Genus database with same CATH topology
2LOYA 2YKGA 2QFDA 4BPBA 4AY2A 2HR9A 5F98A 2RQAA 5F9HA 3ZD7A 3LRRA 2RQBA 2W4RA 3DJMA 1FWQA 1H7YA 2QFBA 3ZD6A 2LVLA 3LRNA 1HXRA 3NCUA 5F9FA 5E3HA 2KWBA 3OG8A 3FACA 4A2VA 3P3KA 2RMJA 3GA3A 3EQTA 2FU5A 1H6QA 4A2XA 1TXJA 3EBMA 1YZ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YKG A;  2QFD A;  4BPB A;  4AY2 A;  5F98 A;  2RQA A;  5F9H A;  3ZD7 A;  3LRR A;  2RQB A;  2W4R A;  2QFB A;  3ZD6 A;  3LRN A;  3NCU A;  5F9F A;  5E3H A;  3OG8 A;  4A2V A;  3EQT A;  2RMJ A;  3GA3 A;  4A2X A; 
#chains in the Genus database with same CATH topology
 2LOY A;  3E0M A;  2YKG A;  2K8D A;  3HCH A;  2QFD A;  4BPB A;  4AY2 A;  2HR9 A;  4V30 A;  5F98 A;  3HCJ A;  2RQA A;  3HCI A;  4CI1 B;  5F9H A;  3ZD7 A;  3LRR A;  2RQB A;  2W4R A;  3DJM A;  1FWQ A;  4CI2 B;  3HCG A;  2KZN A;  2KV1 A;  3MAO A;  1H7Y A;  2QFB A;  3E0O A;  3ZD6 A;  2LVL A;  3LRN A;  4V31 A;  1HXR A;  4TZU A;  4TZ4 C;  3NCU A;  4V2Y A;  4TZC A;  5F9F A;  4CI3 B;  5E3H A;  2KWB A;  3OG8 A;  3FAC A;  4A2V A;  5AMH A;  1L1D A;  2RMJ A;  3GA3 A;  3P3K A;  4V2Z A;  3WX1 A;  3EQT A;  4A2X A;  2FU5 A;  3CXK A;  1H6Q A;  3CEZ A;  1TXJ A;  3EBM A;  3WX2 A;  1YZ1 A; 
#chains in the Genus database with same CATH homology
 2LOY A;  2YKG A;  2QFD A;  4BPB A;  4AY2 A;  2HR9 A;  5F98 A;  2RQA A;  5F9H A;  3ZD7 A;  3LRR A;  2RQB A;  2W4R A;  3DJM A;  1FWQ A;  1H7Y A;  2QFB A;  3ZD6 A;  2LVL A;  3LRN A;  1HXR A;  3NCU A;  5F9F A;  5E3H A;  2KWB A;  3OG8 A;  3FAC A;  4A2V A;  3P3K A;  2RMJ A;  3GA3 A;  3EQT A;  2FU5 A;  1H6Q A;  4A2X A;  1TXJ A;  3EBM A;  1YZ1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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