3OTON

Crystal structure of the 30s ribosomal subunit from a ksga mutant of thermus thermophilus (hb8)
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 8
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2010-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 3otoN00
1N32N 1HNWN 4NXNN 4DV1N 4DV4N 4LFAN 2VQEN 4GKKN 4DR7N 2UXDN 4X66N 4DR4N 4X64N 4YHHN 4X62N 2UXCN 3T1YN 4LFCN 1J5EN 2E5LN 2VQFN 4DR6N 4KHPN 5LMUN 4NXMN 4B3MN 2F4VN 4AQYN 2UU9N 1IBLN 4JI7N 4B3SN 1HR0N 4DR5N 3T1HN 1HNZN 4K0KN 2ZM6N 1IBKN 5LMNN 4DV5N 4JI8N 4JI4N 5IWAN 1FJGN 4JI2N 4DV7N 4OX9N 4GKJN 2UUCN 4LF5N 4DR1N 4LF8N 5FLXd 4JI0N 1I94N 1HNXN 4JI6N 4DV2N 4DV6N 5IT9d 4DR2N 1XNRN 4LFBN 2UXBN 4JYAN 1N33N 5A2Qd 3J80d 4B3RN 1N36N 4LF7N 2UUAN 3JAMd 4JV5N 2HHHN 4JI5N 4DV3N 4DV0N 4DUZN 4JI1N 4X65N 4LF4N 3OTON 4B3TN 4YY3N 4DUYN 4LF9N 1XMQN 1IBMN 4LF6N 1XMON 2UUBN 3J7AT 3J81d 5BR8N 1XNQN 1N34N 4JI3N 4DR3N
chains in the Genus database with same CATH superfamily
1N32N 1HNWN 4NXNN 4DV1N 4DV4N 4LFAN 2VQEN 4GKKN 4DR7N 2UXDN 4X66N 4DR4N 4X64N 4YHHN 4X62N 2UXCN 3T1YN 4LFCN 1J5EN 2E5LN 2VQFN 4DR6N 4KHPN 5LMUN 4NXMN 4B3MN 2F4VN 4AQYN 2UU9N 1IBLN 4JI7N 4B3SN 1HR0N 4DR5N 3T1HN 1HNZN 4K0KN 2ZM6N 1IBKN 5LMNN 4DV5N 4JI8N 4JI4N 5IWAN 1FJGN 4JI2N 4DV7N 4OX9N 4GKJN 2UUCN 4LF5N 4DR1N 4LF8N 5FLXd 4JI0N 1I94N 1HNXN 4JI6N 4DV2N 4DV6N 5IT9d 4DR2N 1XNRN 4LFBN 2UXBN 4JYAN 1N33N 5A2Qd 3J80d 4B3RN 1N36N 4LF7N 2UUAN 3JAMd 4JV5N 2HHHN 4JI5N 4DV3N 4DV0N 4DUZN 4JI1N 4X65N 4LF4N 3OTON 4B3TN 4YY3N 4DUYN 4LF9N 1XMQN 1IBMN 4LF6N 1XMON 2UUBN 3J7AT 3J81d 5BR8N 1XNQN 1N34N 4JI3N 4DR3N
chains in the Genus database with same CATH topology
1N32N 1HNWN 4NXNN 4DV1N 4DV4N 4LFAN 2VQEN 4GKKN 4DR7N 2UXDN 4X66N 4DR4N 4X64N 4YHHN 4X62N 2UXCN 3T1YN 4LFCN 1J5EN 2E5LN 2VQFN 4DR6N 4KHPN 5LMUN 4NXMN 4B3MN 2F4VN 4AQYN 2UU9N 1IBLN 4JI7N 4B3SN 1HR0N 4DR5N 3T1HN 1HNZN 4K0KN 2ZM6N 1IBKN 5LMNN 4DV5N 4JI8N 4JI4N 5IWAN 1FJGN 4JI2N 4DV7N 4OX9N 4GKJN 2UUCN 4LF5N 4DR1N 4LF8N 5FLXd 4JI0N 1I94N 1HNXN 4JI6N 4DV2N 4DV6N 5IT9d 4DR2N 1XNRN 4LFBN 2UXBN 4JYAN 1N33N 5A2Qd 3J80d 4B3RN 1N36N 4LF7N 2UUAN 3JAMd 4JV5N 2HHHN 4JI5N 4DV3N 4DV0N 4DUZN 4JI1N 4X65N 4LF4N 3OTON 4B3TN 4YY3N 4DUYN 4LF9N 1XMQN 1IBMN 4LF6N 1XMON 2UUBN 3J7AT 3J81d 5BR8N 1XNQN 1N34N 4JI3N 4DR3N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N32 N;  1HNW N;  4NXN N;  4DV1 N;  4DV4 N;  4LFA N;  2VQE N;  4GKK N;  4DR7 N;  2UXD N;  4X66 N;  4DR4 N;  4X64 N;  4YHH N;  4X62 N;  2UXC N;  3T1Y N;  4LFC N;  1J5E N;  2E5L N;  2VQF N;  4DR6 N;  4KHP N;  5LMU N;  4NXM N;  4B3M N;  2F4V N;  4AQY N;  2UU9 N;  1IBL N;  4JI7 N;  4B3S N;  1HR0 N;  4DR5 N;  3T1H N;  1HNZ N;  4K0K N;  2ZM6 N;  1IBK N;  5LMN N;  4DV5 N;  4JI8 N;  4JI4 N;  5IWA N;  1FJG N;  4JI2 N;  4DV7 N;  4OX9 N;  4GKJ N;  2UUC N;  4LF5 N;  4DR1 N;  4LF8 N;  5FLX d;  4JI0 N;  1I94 N;  1HNX N;  4JI6 N;  4DV2 N;  4DV6 N;  5IT9 d;  4DR2 N;  1XNR N;  4LFB N;  2UXB N;  4JYA N;  1N33 N;  5A2Q d;  3J80 d;  4B3R N;  1N36 N;  4LF7 N;  2UUA N;  3JAM d;  4JV5 N;  2HHH N;  4JI5 N;  4DV3 N;  4DV0 N;  4DUZ N;  4JI1 N;  4X65 N;  4LF4 N;  3OTO N;  4B3T N;  4YY3 N;  4DUY N;  4LF9 N;  1XMQ N;  1IBM N;  4LF6 N;  1XMO N;  2UUB N;  3J7A T;  3J81 d;  5BR8 N;  1XNQ N;  1N34 N;  4JI3 N;  4DR3 N; 
#chains in the Genus database with same CATH topology
 1N32 N;  1HNW N;  4NXN N;  4DV1 N;  4DV4 N;  4LFA N;  2VQE N;  4GKK N;  4DR7 N;  2UXD N;  4X66 N;  4DR4 N;  4X64 N;  4YHH N;  4X62 N;  2UXC N;  3T1Y N;  4LFC N;  1J5E N;  2E5L N;  2VQF N;  4DR6 N;  4KHP N;  5LMU N;  4NXM N;  4B3M N;  2F4V N;  4AQY N;  2UU9 N;  1IBL N;  4JI7 N;  4B3S N;  1HR0 N;  4DR5 N;  3T1H N;  1HNZ N;  4K0K N;  2ZM6 N;  1IBK N;  5LMN N;  4DV5 N;  4JI8 N;  4JI4 N;  5IWA N;  1FJG N;  4JI2 N;  4DV7 N;  4OX9 N;  4GKJ N;  2UUC N;  4LF5 N;  4DR1 N;  4LF8 N;  5FLX d;  4JI0 N;  1I94 N;  1HNX N;  4JI6 N;  4DV2 N;  4DV6 N;  5IT9 d;  4DR2 N;  1XNR N;  4LFB N;  2UXB N;  4JYA N;  1N33 N;  5A2Q d;  3J80 d;  4B3R N;  1N36 N;  4LF7 N;  2UUA N;  3JAM d;  4JV5 N;  2HHH N;  4JI5 N;  4DV3 N;  4DV0 N;  4DUZ N;  4JI1 N;  4X65 N;  4LF4 N;  3OTO N;  4B3T N;  4YY3 N;  4DUY N;  4LF9 N;  1XMQ N;  1IBM N;  4LF6 N;  1XMO N;  2UUB N;  3J7A T;  3J81 d;  5BR8 N;  1XNQ N;  1N34 N;  4JI3 N;  4DR3 N; 
#chains in the Genus database with same CATH homology
 1N32 N;  1HNW N;  4NXN N;  4DV1 N;  4DV4 N;  4LFA N;  2VQE N;  4GKK N;  4DR7 N;  2UXD N;  4X66 N;  4DR4 N;  4X64 N;  4YHH N;  4X62 N;  2UXC N;  3T1Y N;  4LFC N;  1J5E N;  2E5L N;  2VQF N;  4DR6 N;  4KHP N;  5LMU N;  4NXM N;  4B3M N;  2F4V N;  4AQY N;  2UU9 N;  1IBL N;  4JI7 N;  4B3S N;  1HR0 N;  4DR5 N;  3T1H N;  1HNZ N;  4K0K N;  2ZM6 N;  1IBK N;  5LMN N;  4DV5 N;  4JI8 N;  4JI4 N;  5IWA N;  1FJG N;  4JI2 N;  4DV7 N;  4OX9 N;  4GKJ N;  2UUC N;  4LF5 N;  4DR1 N;  4LF8 N;  5FLX d;  4JI0 N;  1I94 N;  1HNX N;  4JI6 N;  4DV2 N;  4DV6 N;  5IT9 d;  4DR2 N;  1XNR N;  4LFB N;  2UXB N;  4JYA N;  1N33 N;  5A2Q d;  3J80 d;  4B3R N;  1N36 N;  4LF7 N;  2UUA N;  3JAM d;  4JV5 N;  2HHH N;  4JI5 N;  4DV3 N;  4DV0 N;  4DUZ N;  4JI1 N;  4X65 N;  4LF4 N;  3OTO N;  4B3T N;  4YY3 N;  4DUY N;  4LF9 N;  1XMQ N;  1IBM N;  4LF6 N;  1XMO N;  2UUB N;  3J7A T;  3J81 d;  5BR8 N;  1XNQ N;  1N34 N;  4JI3 N;  4DR3 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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