3P9FA

Urate oxidase-azaxanthine-azide ternary complex
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
295
structure length
295
Chain Sequence
SAVKAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSASVQATMYKMAEQILARQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxygen binding
molecule keywords Uricase
publication title Azide and cyanide have different inhibition modes of urate oxidase
rcsb
source organism Aspergillus flavus
total genus 85
structure length 295
sequence length 295
ec nomenclature ec 1.7.3.3: Factor independent urate hydroxylase.
pdb deposition date 2010-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01014 Uricase Uricase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.270.10 Alpha Beta Roll Urate Oxidase Urate Oxidase; 3p9fA00
3D2OA 1R4UA 3CKUA 1WS2A 3PKTA 1XT4A 2YZDA 4N3MA 3P9FA 4FSKA 4D19A 3PLMA 3PLEA 1J2GA 3PK3A 5LL1A 1R4SA 4CW6A 1VAYA 1XXJA 4OP6A 4N9VA 4R8XA 3PKFA 4XFPA 2ICQA 4POEA 3PK4A 2YZCA 3PLJA 3L8WA 4CW2A 2PESA 5M98A 2YZEA 5K95A 3PKUA 4N9SA 1R51A 4OQCA 3PKLA 3PKKA 2IC0A 3P9OA 3F2MA 1VAXA 2IBAA 3BJPA 4R99A 3PLGA 4CW0A 1WS3A 3GKOA 3PK6A 4D13A 2ZKBA 4D17A 3OBPA 2FXLA 2FUBA 5AYJA 4N9MA 1R56A 2YZBA 3PK8A 3PKGA 3PLHA 1XY3A 4MB8A 3LD4A 3PKSA 5FRCA 4D12A 5K9GA 3BK8A 3PKHA 4OP9A 4PUVA 3L9GA 3PJKA 2ZKAA 3LBGA 4CW3A 3WLVA 3PK5A 3CKSA 4PR8A 3PLIA 2R5RA 1WRRA
chains in the Genus database with same CATH superfamily
3D2OA 1R4UA 3CKUA 1WS2A 3PKTA 1XT4A 2YZDA 4N3MA 3P9FA 4FSKA 4D19A 3PLMA 3PLEA 1J2GA 3PK3A 5LL1A 1R4SA 4CW6A 1VAYA 1XXJA 4OP6A 4N9VA 4R8XA 3PKFA 4XFPA 2ICQA 4POEA 3PK4A 2YZCA 3PLJA 3L8WA 4CW2A 2PESA 5M98A 2YZEA 5K95A 3PKUA 4N9SA 1R51A 4OQCA 3PKLA 3PKKA 2IC0A 3P9OA 3F2MA 1VAXA 2IBAA 3BJPA 4R99A 3PLGA 4CW0A 1WS3A 3GKOA 3PK6A 4D13A 2ZKBA 4D17A 3OBPA 2FXLA 2FUBA 5AYJA 4N9MA 1R56A 2YZBA 3PK8A 3PKGA 3PLHA 1XY3A 4MB8A 3LD4A 3PKSA 5FRCA 4D12A 5K9GA 3BK8A 3PKHA 4OP9A 4PUVA 3L9GA 3PJKA 2ZKAA 3LBGA 4CW3A 3WLVA 3PK5A 3CKSA 4PR8A 3PLIA 2R5RA 1WRRA
chains in the Genus database with same CATH topology
3D2OA 1R4UA 3CKUA 1WS2A 3PKTA 1XT4A 2YZDA 4N3MA 3P9FA 4FSKA 4D19A 3PLMA 3PLEA 1J2GA 3PK3A 5LL1A 1R4SA 4CW6A 1VAYA 1XXJA 4OP6A 4N9VA 4R8XA 3PKFA 4XFPA 2ICQA 4POEA 3PK4A 2YZCA 3PLJA 3L8WA 4CW2A 2PESA 5M98A 2YZEA 5K95A 3PKUA 4N9SA 1R51A 4OQCA 3PKLA 3PKKA 2IC0A 3P9OA 3F2MA 1VAXA 2IBAA 3BJPA 4R99A 3PLGA 4CW0A 1WS3A 3GKOA 3PK6A 4D13A 2ZKBA 4D17A 3OBPA 2FXLA 2FUBA 5AYJA 4N9MA 1R56A 2YZBA 3PK8A 3PKGA 3PLHA 1XY3A 4MB8A 3LD4A 3PKSA 5FRCA 4D12A 5K9GA 3BK8A 3PKHA 4OP9A 4PUVA 3L9GA 3PJKA 2ZKAA 3LBGA 4CW3A 3WLVA 3PK5A 3CKSA 4PR8A 3PLIA 2R5RA 1WRRA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3D2O A;  1R4U A;  3CKU A;  1WS2 A;  3PKT A;  1XT4 A;  2YZD A;  4N3M A;  3P9F A;  4FSK A;  4D19 A;  3PLM A;  3PLE A;  1J2G A;  3PK3 A;  5LL1 A;  1R4S A;  4CW6 A;  1VAY A;  1XXJ A;  4OP6 A;  4N9V A;  4R8X A;  3PKF A;  4XFP A;  2ICQ A;  4POE A;  3PK4 A;  2YZC A;  3PLJ A;  3L8W A;  4CW2 A;  2PES A;  5M98 A;  2YZE A;  5K95 A;  3PKU A;  4N9S A;  1R51 A;  4OQC A;  3PKL A;  3PKK A;  2IC0 A;  3P9O A;  3F2M A;  1VAX A;  2IBA A;  3BJP A;  4R99 A;  3PLG A;  4CW0 A;  1WS3 A;  3GKO A;  3PK6 A;  4D13 A;  2ZKB A;  4D17 A;  3OBP A;  2FXL A;  2FUB A;  5AYJ A;  4N9M A;  1R56 A;  2YZB A;  3PK8 A;  3PKG A;  3PLH A;  1XY3 A;  4MB8 A;  3LD4 A;  3PKS A;  5FRC A;  4D12 A;  5K9G A;  3BK8 A;  3PKH A;  4OP9 A;  4PUV A;  3L9G A;  3PJK A;  2ZKA A;  3LBG A;  4CW3 A;  3WLV A;  3PK5 A;  3CKS A;  4PR8 A;  3PLI A;  2R5R A;  1WRR A; 
#chains in the Genus database with same CATH topology
 3D2O A;  1R4U A;  3CKU A;  1WS2 A;  3PKT A;  1XT4 A;  2YZD A;  4N3M A;  3P9F A;  4FSK A;  4D19 A;  3PLM A;  3PLE A;  1J2G A;  3PK3 A;  5LL1 A;  1R4S A;  4CW6 A;  1VAY A;  1XXJ A;  4OP6 A;  4N9V A;  4R8X A;  3PKF A;  4XFP A;  2ICQ A;  4POE A;  3PK4 A;  2YZC A;  3PLJ A;  3L8W A;  4CW2 A;  2PES A;  5M98 A;  2YZE A;  5K95 A;  3PKU A;  4N9S A;  1R51 A;  4OQC A;  3PKL A;  3PKK A;  2IC0 A;  3P9O A;  3F2M A;  1VAX A;  2IBA A;  3BJP A;  4R99 A;  3PLG A;  4CW0 A;  1WS3 A;  3GKO A;  3PK6 A;  4D13 A;  2ZKB A;  4D17 A;  3OBP A;  2FXL A;  2FUB A;  5AYJ A;  4N9M A;  1R56 A;  2YZB A;  3PK8 A;  3PKG A;  3PLH A;  1XY3 A;  4MB8 A;  3LD4 A;  3PKS A;  5FRC A;  4D12 A;  5K9G A;  3BK8 A;  3PKH A;  4OP9 A;  4PUV A;  3L9G A;  3PJK A;  2ZKA A;  3LBG A;  4CW3 A;  3WLV A;  3PK5 A;  3CKS A;  4PR8 A;  3PLI A;  2R5R A;  1WRR A; 
#chains in the Genus database with same CATH homology
 3D2O A;  1R4U A;  3CKU A;  1WS2 A;  3PKT A;  1XT4 A;  2YZD A;  4N3M A;  3P9F A;  4FSK A;  4D19 A;  3PLM A;  3PLE A;  1J2G A;  3PK3 A;  5LL1 A;  1R4S A;  4CW6 A;  1VAY A;  1XXJ A;  4OP6 A;  4N9V A;  4R8X A;  3PKF A;  4XFP A;  2ICQ A;  4POE A;  3PK4 A;  2YZC A;  3PLJ A;  3L8W A;  4CW2 A;  2PES A;  5M98 A;  2YZE A;  5K95 A;  3PKU A;  4N9S A;  1R51 A;  4OQC A;  3PKL A;  3PKK A;  2IC0 A;  3P9O A;  3F2M A;  1VAX A;  2IBA A;  3BJP A;  4R99 A;  3PLG A;  4CW0 A;  1WS3 A;  3GKO A;  3PK6 A;  4D13 A;  2ZKB A;  4D17 A;  3OBP A;  2FXL A;  2FUB A;  5AYJ A;  4N9M A;  1R56 A;  2YZB A;  3PK8 A;  3PKG A;  3PLH A;  1XY3 A;  4MB8 A;  3LD4 A;  3PKS A;  5FRC A;  4D12 A;  5K9G A;  3BK8 A;  3PKH A;  4OP9 A;  4PUV A;  3L9G A;  3PJK A;  2ZKA A;  3LBG A;  4CW3 A;  3WLV A;  3PK5 A;  3CKS A;  4PR8 A;  3PLI A;  2R5R A;  1WRR A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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