3PKDA

M. tuberculosis metap with bengamide analog y10, in mn form
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
282
structure length
282
Chain Sequence
RTALSPGVLSPTRPVPNWIARPEYVGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILTCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Methionine aminopeptidase
publication title Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidases by Bengamide Derivatives.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 85
structure length 282
sequence length 282
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2010-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3pkdA01
3PKBA 2Q92A 2BWXA 2DFIA 1C24A 4S2TP 1XGOA 4U75A 3D27A 2GG7A 4U69A 2GG2A 5CIKA 3FMQA 5CNXA 3BIQA 2P99A 1XGNA 3MR1A 1R58A 1A16A 1C23A 3BITA 4R60A 4RZYA 2EVCA 4U71A 1WL6A 1WLRA 2NQ7A 5JHUA 4FO8A 5CDEA 1BOAA 1O0XA 1R5GA 1XNZA 2BHDA 2BWVA 1W2MA 2V3YA 4IU6A 3PKEA 2P9AA 4FLKA 4IECA 5CDLA 5JI6A 3L24A 2P98A 4JUQA 5D6EA 2BH3A 1YW7A 2GG8A 2IW2A 1CHMA 3RORA 1YJ3A 3IU7A 4KM3A 1C22A 3PKAA 4Z7MA 3TB5A 4A6WA 5CLSA 5CDVA 2BWWA 3IG4A 3CTZA 4FO7A 1W7VA 2GZ5A 2G6PA 2Q96A 4U6JA 1M35A 2GGBA 4ZWOA 2EVOA 4HXXA 1C27A 3FM3A 4IF7A 3IU8A 4OOKA 2HOWA 2OAZA 3BIPA 4PNCA 2EA2A 1MATA 2NQ6A 4IDYA 1PV9A 3IU9A 3PKDA 1XGSA 1XGMA 4IKRA 4IKUA 1BN5A 2EVMA 4S00A 5D6FA 2BHCA 2B3HA 4QR8A 5FCFA 2B3LA 1N51A 1C21A 1YVMA 4U76A 4ZWPA 1B59A 2BN7A 2ADUA 4IKSA 2BHAA 3TAVA 2BWUA 1Y1NA 4U6ZA 2GG5A 2GU4A 4IPAA 1WKMA 4S2RP 4U73A 4U1BA 5E5BA 1YW9A 2Q94A 3MATA 4FUKA 1QZYA 3Q6DA 4FLJA 1QXWA 2V3ZA 2MATA 4MATA 1KQ9A 2Q93A 1WL9A 4FLLA 2Q8KA 4ZNGA 1WY2A 1B6AA 2Q95A 3MX6A 1YW8A 4PV4A 4U6WA 3RVAA 4U6CA 2GA2A 3L7GA 1WBQA 4FLIA 4RZZA 1KQ0A 2GGCA 4RGZ1 1R5HA 2BWTA 3PKCA 4U6EA 4EGEA 1QXYA 2GG0A 1QXZA 4IKTA 2B3KA 2BHBA 2OKNA 5FCHA 1WN1A 2GU6A 2V6CA 3S6BA 2BWSA 4ZWUA 3CB6A 3FMRA 4A6VA 2BWYA 1JAWA 4U70A 3CB5A 2GG9A 2GG3A 2GU7A 5CE6A 4B28A 2V3XA 1KP0A 2EA4A 5JFRA 2GTXA 2BB7A 4FKCA 4S01A 2ZSGA 2GU5A
chains in the Genus database with same CATH superfamily
3PKBA 2Q92A 2BWXA 2DFIA 1C24A 4S2TP 1XGOA 4U75A 3D27A 2GG7A 4U69A 2GG2A 5CIKA 3FMQA 5CNXA 3BIQA 2P99A 1XGNA 3MR1A 1R58A 1A16A 1C23A 3BITA 4R60A 4RZYA 2EVCA 4U71A 1WL6A 1WLRA 2NQ7A 5JHUA 4FO8A 5CDEA 1BOAA 1O0XA 1R5GA 1XNZA 2BHDA 2BWVA 1W2MA 2V3YA 4IU6A 3PKEA 2P9AA 4FLKA 4IECA 5CDLA 5JI6A 3L24A 2P98A 4JUQA 5D6EA 2BH3A 1YW7A 2GG8A 2IW2A 1CHMA 3RORA 1YJ3A 3IU7A 4KM3A 1C22A 3PKAA 4Z7MA 3TB5A 4A6WA 5CLSA 5CDVA 2BWWA 3IG4A 3CTZA 4FO7A 1W7VA 2GZ5A 2G6PA 2Q96A 4U6JA 1M35A 2GGBA 4ZWOA 2EVOA 4HXXA 1C27A 3FM3A 4IF7A 3IU8A 4OOKA 2HOWA 2OAZA 3BIPA 4PNCA 2EA2A 1MATA 2NQ6A 4IDYA 1PV9A 3IU9A 3PKDA 1XGSA 1XGMA 4IKRA 4IKUA 1BN5A 2EVMA 4S00A 5D6FA 2BHCA 2B3HA 4QR8A 5FCFA 2B3LA 1N51A 1C21A 1YVMA 4U76A 4ZWPA 1B59A 2BN7A 2ADUA 4IKSA 2BHAA 3TAVA 2BWUA 1Y1NA 4U6ZA 2GG5A 2GU4A 4IPAA 1WKMA 4S2RP 4U73A 4U1BA 5E5BA 1YW9A 2Q94A 3MATA 4FUKA 1QZYA 3Q6DA 4FLJA 1QXWA 2V3ZA 2MATA 4MATA 1KQ9A 2Q93A 1WL9A 4FLLA 2Q8KA 4ZNGA 1WY2A 1B6AA 2Q95A 3MX6A 1YW8A 4PV4A 4U6WA 3RVAA 4U6CA 2GA2A 3L7GA 1WBQA 4FLIA 4RZZA 1KQ0A 2GGCA 4RGZ1 1R5HA 2BWTA 3PKCA 4U6EA 4EGEA 1QXYA 2GG0A 1QXZA 4IKTA 2B3KA 2BHBA 2OKNA 5FCHA 1WN1A 2GU6A 2V6CA 3S6BA 2BWSA 4ZWUA 3CB6A 3FMRA 4A6VA 2BWYA 1JAWA 4U70A 3CB5A 2GG9A 2GG3A 2GU7A 5CE6A 4B28A 2V3XA 1KP0A 2EA4A 5JFRA 2GTXA 2BB7A 4FKCA 4S01A 2ZSGA 2GU5A
chains in the Genus database with same CATH topology
3PKBA 2Q92A 2BWXA 2DFIA 1C24A 4S2TP 1XGOA 4U75A 3D27A 2GG7A 4U69A 2GG2A 5CIKA 3FMQA 5CNXA 3BIQA 2P99A 1XGNA 3MR1A 1R58A 1A16A 1C23A 3BITA 4R60A 4RZYA 2EVCA 4U71A 1WL6A 1WLRA 2NQ7A 5JHUA 4FO8A 5CDEA 1BOAA 1O0XA 1R5GA 1XNZA 2BHDA 2BWVA 1W2MA 2V3YA 4IU6A 3PKEA 2P9AA 4FLKA 4IECA 5CDLA 5JI6A 3L24A 2P98A 4JUQA 5D6EA 2BH3A 1YW7A 2GG8A 2IW2A 1CHMA 3RORA 1YJ3A 3IU7A 4KM3A 1C22A 3PKAA 4Z7MA 3TB5A 4A6WA 5CLSA 5CDVA 2BWWA 3IG4A 3CTZA 4FO7A 1W7VA 2GZ5A 2G6PA 2Q96A 4U6JA 1M35A 2GGBA 4ZWOA 2EVOA 4HXXA 1C27A 3FM3A 4IF7A 3IU8A 4OOKA 2HOWA 2OAZA 3BIPA 4PNCA 2EA2A 1MATA 2NQ6A 4IDYA 1PV9A 3IU9A 3PKDA 1XGSA 1XGMA 4IKRA 4IKUA 1BN5A 2EVMA 4S00A 5D6FA 2BHCA 2B3HA 4QR8A 5FCFA 2B3LA 1N51A 1C21A 1YVMA 4U76A 4ZWPA 1B59A 2BN7A 2ADUA 4IKSA 2BHAA 3TAVA 2BWUA 1Y1NA 4U6ZA 2GG5A 2GU4A 4IPAA 1WKMA 4S2RP 4U73A 4U1BA 5E5BA 1YW9A 2Q94A 3MATA 4FUKA 1QZYA 3Q6DA 4FLJA 1QXWA 2V3ZA 2MATA 4MATA 1KQ9A 2Q93A 1WL9A 4FLLA 2Q8KA 4ZNGA 1WY2A 1B6AA 2Q95A 3MX6A 1YW8A 4PV4A 4U6WA 3RVAA 4U6CA 2GA2A 3L7GA 1WBQA 4FLIA 4RZZA 1KQ0A 2GGCA 4RGZ1 1R5HA 2BWTA 3PKCA 4U6EA 4EGEA 1QXYA 2GG0A 1QXZA 4IKTA 2B3KA 2BHBA 2OKNA 5FCHA 1WN1A 2GU6A 2V6CA 3S6BA 2BWSA 4ZWUA 3CB6A 3FMRA 4A6VA 2BWYA 1JAWA 4U70A 3CB5A 2GG9A 2GG3A 2GU7A 5CE6A 4B28A 2V3XA 1KP0A 2EA4A 5JFRA 2GTXA 2BB7A 4FKCA 4S01A 2ZSGA 2GU5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PKB A;  2Q92 A;  2BWX A;  2DFI A;  1C24 A;  4S2T P;  1XGO A;  4U75 A;  3D27 A;  2GG7 A;  4U69 A;  2GG2 A;  5CIK A;  3FMQ A;  5CNX A;  3BIQ A;  2P99 A;  1XGN A;  3MR1 A;  1R58 A;  1A16 A;  1C23 A;  3BIT A;  4R60 A;  4RZY A;  2EVC A;  4U71 A;  1WL6 A;  1WLR A;  2NQ7 A;  5JHU A;  4FO8 A;  5CDE A;  1BOA A;  1O0X A;  1R5G A;  1XNZ A;  2BHD A;  2BWV A;  1W2M A;  2V3Y A;  4IU6 A;  3PKE A;  2P9A A;  4FLK A;  4IEC A;  5CDL A;  5JI6 A;  3L24 A;  2P98 A;  4JUQ A;  5D6E A;  2BH3 A;  1YW7 A;  2GG8 A;  2IW2 A;  1CHM A;  3ROR A;  1YJ3 A;  3IU7 A;  4KM3 A;  1C22 A;  3PKA A;  4Z7M A;  3TB5 A;  4A6W A;  5CLS A;  5CDV A;  2BWW A;  3IG4 A;  3CTZ A;  4FO7 A;  1W7V A;  2GZ5 A;  2G6P A;  2Q96 A;  4U6J A;  1M35 A;  2GGB A;  4ZWO A;  2EVO A;  4HXX A;  1C27 A;  3FM3 A;  4IF7 A;  3IU8 A;  4OOK A;  2HOW A;  2OAZ A;  3BIP A;  4PNC A;  2EA2 A;  1MAT A;  2NQ6 A;  4IDY A;  1PV9 A;  3IU9 A;  3PKD A;  1XGS A;  1XGM A;  4IKR A;  4IKU A;  1BN5 A;  2EVM A;  4S00 A;  5D6F A;  2BHC A;  2B3H A;  4QR8 A;  5FCF A;  2B3L A;  1N51 A;  1C21 A;  1YVM A;  4U76 A;  4ZWP A;  1B59 A;  2BN7 A;  2ADU A;  4IKS A;  2BHA A;  3TAV A;  2BWU A;  1Y1N A;  4U6Z A;  2GG5 A;  2GU4 A;  4IPA A;  1WKM A;  4S2R P;  4U73 A;  4U1B A;  5E5B A;  1YW9 A;  2Q94 A;  3MAT A;  4FUK A;  1QZY A;  3Q6D A;  4FLJ A;  1QXW A;  2V3Z A;  2MAT A;  4MAT A;  1KQ9 A;  2Q93 A;  1WL9 A;  4FLL A;  2Q8K A;  4ZNG A;  1WY2 A;  1B6A A;  2Q95 A;  3MX6 A;  1YW8 A;  4PV4 A;  4U6W A;  3RVA A;  4U6C A;  2GA2 A;  3L7G A;  1WBQ A;  4FLI A;  4RZZ A;  1KQ0 A;  2GGC A;  4RGZ 1;  1R5H A;  2BWT A;  3PKC A;  4U6E A;  4EGE A;  1QXY A;  2GG0 A;  1QXZ A;  4IKT A;  2B3K A;  2BHB A;  2OKN A;  5FCH A;  1WN1 A;  2GU6 A;  2V6C A;  3S6B A;  2BWS A;  4ZWU A;  3CB6 A;  3FMR A;  4A6V A;  2BWY A;  1JAW A;  4U70 A;  3CB5 A;  2GG9 A;  2GG3 A;  2GU7 A;  5CE6 A;  4B28 A;  2V3X A;  1KP0 A;  2EA4 A;  5JFR A;  2GTX A;  2BB7 A;  4FKC A;  4S01 A;  2ZSG A;  2GU5 A; 
#chains in the Genus database with same CATH topology
 3PKB A;  2Q92 A;  2BWX A;  2DFI A;  1C24 A;  4S2T P;  1XGO A;  4U75 A;  3D27 A;  2GG7 A;  4U69 A;  2GG2 A;  5CIK A;  3FMQ A;  5CNX A;  3BIQ A;  2P99 A;  1XGN A;  3MR1 A;  1R58 A;  1A16 A;  1C23 A;  3BIT A;  4R60 A;  4RZY A;  2EVC A;  4U71 A;  1WL6 A;  1WLR A;  2NQ7 A;  5JHU A;  4FO8 A;  5CDE A;  1BOA A;  1O0X A;  1R5G A;  1XNZ A;  2BHD A;  2BWV A;  1W2M A;  2V3Y A;  4IU6 A;  3PKE A;  2P9A A;  4FLK A;  4IEC A;  5CDL A;  5JI6 A;  3L24 A;  2P98 A;  4JUQ A;  5D6E A;  2BH3 A;  1YW7 A;  2GG8 A;  2IW2 A;  1CHM A;  3ROR A;  1YJ3 A;  3IU7 A;  4KM3 A;  1C22 A;  3PKA A;  4Z7M A;  3TB5 A;  4A6W A;  5CLS A;  5CDV A;  2BWW A;  3IG4 A;  3CTZ A;  4FO7 A;  1W7V A;  2GZ5 A;  2G6P A;  2Q96 A;  4U6J A;  1M35 A;  2GGB A;  4ZWO A;  2EVO A;  4HXX A;  1C27 A;  3FM3 A;  4IF7 A;  3IU8 A;  4OOK A;  2HOW A;  2OAZ A;  3BIP A;  4PNC A;  2EA2 A;  1MAT A;  2NQ6 A;  4IDY A;  1PV9 A;  3IU9 A;  3PKD A;  1XGS A;  1XGM A;  4IKR A;  4IKU A;  1BN5 A;  2EVM A;  4S00 A;  5D6F A;  2BHC A;  2B3H A;  4QR8 A;  5FCF A;  2B3L A;  1N51 A;  1C21 A;  1YVM A;  4U76 A;  4ZWP A;  1B59 A;  2BN7 A;  2ADU A;  4IKS A;  2BHA A;  3TAV A;  2BWU A;  1Y1N A;  4U6Z A;  2GG5 A;  2GU4 A;  4IPA A;  1WKM A;  4S2R P;  4U73 A;  4U1B A;  5E5B A;  1YW9 A;  2Q94 A;  3MAT A;  4FUK A;  1QZY A;  3Q6D A;  4FLJ A;  1QXW A;  2V3Z A;  2MAT A;  4MAT A;  1KQ9 A;  2Q93 A;  1WL9 A;  4FLL A;  2Q8K A;  4ZNG A;  1WY2 A;  1B6A A;  2Q95 A;  3MX6 A;  1YW8 A;  4PV4 A;  4U6W A;  3RVA A;  4U6C A;  2GA2 A;  3L7G A;  1WBQ A;  4FLI A;  4RZZ A;  1KQ0 A;  2GGC A;  4RGZ 1;  1R5H A;  2BWT A;  3PKC A;  4U6E A;  4EGE A;  1QXY A;  2GG0 A;  1QXZ A;  4IKT A;  2B3K A;  2BHB A;  2OKN A;  5FCH A;  1WN1 A;  2GU6 A;  2V6C A;  3S6B A;  2BWS A;  4ZWU A;  3CB6 A;  3FMR A;  4A6V A;  2BWY A;  1JAW A;  4U70 A;  3CB5 A;  2GG9 A;  2GG3 A;  2GU7 A;  5CE6 A;  4B28 A;  2V3X A;  1KP0 A;  2EA4 A;  5JFR A;  2GTX A;  2BB7 A;  4FKC A;  4S01 A;  2ZSG A;  2GU5 A; 
#chains in the Genus database with same CATH homology
 3PKB A;  2Q92 A;  2BWX A;  2DFI A;  1C24 A;  4S2T P;  1XGO A;  4U75 A;  3D27 A;  2GG7 A;  4U69 A;  2GG2 A;  5CIK A;  3FMQ A;  5CNX A;  3BIQ A;  2P99 A;  1XGN A;  3MR1 A;  1R58 A;  1A16 A;  1C23 A;  3BIT A;  4R60 A;  4RZY A;  2EVC A;  4U71 A;  1WL6 A;  1WLR A;  2NQ7 A;  5JHU A;  4FO8 A;  5CDE A;  1BOA A;  1O0X A;  1R5G A;  1XNZ A;  2BHD A;  2BWV A;  1W2M A;  2V3Y A;  4IU6 A;  3PKE A;  2P9A A;  4FLK A;  4IEC A;  5CDL A;  5JI6 A;  3L24 A;  2P98 A;  4JUQ A;  5D6E A;  2BH3 A;  1YW7 A;  2GG8 A;  2IW2 A;  1CHM A;  3ROR A;  1YJ3 A;  3IU7 A;  4KM3 A;  1C22 A;  3PKA A;  4Z7M A;  3TB5 A;  4A6W A;  5CLS A;  5CDV A;  2BWW A;  3IG4 A;  3CTZ A;  4FO7 A;  1W7V A;  2GZ5 A;  2G6P A;  2Q96 A;  4U6J A;  1M35 A;  2GGB A;  4ZWO A;  2EVO A;  4HXX A;  1C27 A;  3FM3 A;  4IF7 A;  3IU8 A;  4OOK A;  2HOW A;  2OAZ A;  3BIP A;  4PNC A;  2EA2 A;  1MAT A;  2NQ6 A;  4IDY A;  1PV9 A;  3IU9 A;  3PKD A;  1XGS A;  1XGM A;  4IKR A;  4IKU A;  1BN5 A;  2EVM A;  4S00 A;  5D6F A;  2BHC A;  2B3H A;  4QR8 A;  5FCF A;  2B3L A;  1N51 A;  1C21 A;  1YVM A;  4U76 A;  4ZWP A;  1B59 A;  2BN7 A;  2ADU A;  4IKS A;  2BHA A;  3TAV A;  2BWU A;  1Y1N A;  4U6Z A;  2GG5 A;  2GU4 A;  4IPA A;  1WKM A;  4S2R P;  4U73 A;  4U1B A;  5E5B A;  1YW9 A;  2Q94 A;  3MAT A;  4FUK A;  1QZY A;  3Q6D A;  4FLJ A;  1QXW A;  2V3Z A;  2MAT A;  4MAT A;  1KQ9 A;  2Q93 A;  1WL9 A;  4FLL A;  2Q8K A;  4ZNG A;  1WY2 A;  1B6A A;  2Q95 A;  3MX6 A;  1YW8 A;  4PV4 A;  4U6W A;  3RVA A;  4U6C A;  2GA2 A;  3L7G A;  1WBQ A;  4FLI A;  4RZZ A;  1KQ0 A;  2GGC A;  4RGZ 1;  1R5H A;  2BWT A;  3PKC A;  4U6E A;  4EGE A;  1QXY A;  2GG0 A;  1QXZ A;  4IKT A;  2B3K A;  2BHB A;  2OKN A;  5FCH A;  1WN1 A;  2GU6 A;  2V6C A;  3S6B A;  2BWS A;  4ZWU A;  3CB6 A;  3FMR A;  4A6V A;  2BWY A;  1JAW A;  4U70 A;  3CB5 A;  2GG9 A;  2GG3 A;  2GU7 A;  5CE6 A;  4B28 A;  2V3X A;  1KP0 A;  2EA4 A;  5JFR A;  2GTX A;  2BB7 A;  4FKC A;  4S01 A;  2ZSG A;  2GU5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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