3R2DA

Crystal structure of antitermination factors nusb and nuse in complex with dsrna
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
135
structure length
132
Chain Sequence
MMRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHLSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/rna
molecule keywords N utilization substance protein B
publication title Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination.
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 53
structure length 132
sequence length 135
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01029 NusB NusB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.940.10 Mainly Alpha Orthogonal Bundle N-utilizing Substance Protein B Homolog; Chain A NusB-like 3r2dA00
1EY1A 1TZXA 1SQGA 3R2CA 3R2DA 3D3BA 5LM7B 2JR0A 2YXLA 1Q8CA 3IMQA 4EYAA 3D3CA 1TZWA 1TZUA 1SQFA 1TZTA 1TZVA 1EYVA
chains in the Genus database with same CATH superfamily
1EY1A 1TZXA 1SQGA 3R2CA 3R2DA 3D3BA 5LM7B 2JR0A 2YXLA 1Q8CA 3IMQA 4EYAA 3D3CA 1TZWA 1TZUA 1SQFA 1TZTA 1TZVA 1EYVA
chains in the Genus database with same CATH topology
1EY1A 1TZXA 1SQGA 3R2CA 3R2DA 3D3BA 5LM7B 2JR0A 2YXLA 1Q8CA 3IMQA 4EYAA 3D3CA 1TZWA 1TZUA 1SQFA 1TZTA 1TZVA 1EYVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EY1 A;  1TZX A;  1SQG A;  3R2C A;  3R2D A;  3D3B A;  5LM7 B;  2JR0 A;  2YXL A;  1Q8C A;  3IMQ A;  4EYA A;  3D3C A;  1TZW A;  1TZU A;  1SQF A;  1TZT A;  1TZV A;  1EYV A; 
#chains in the Genus database with same CATH topology
 1EY1 A;  1TZX A;  1SQG A;  3R2C A;  3R2D A;  3D3B A;  5LM7 B;  2JR0 A;  2YXL A;  1Q8C A;  3IMQ A;  4EYA A;  3D3C A;  1TZW A;  1TZU A;  1SQF A;  1TZT A;  1TZV A;  1EYV A; 
#chains in the Genus database with same CATH homology
 1EY1 A;  1TZX A;  1SQG A;  3R2C A;  3R2D A;  3D3B A;  5LM7 B;  2JR0 A;  2YXL A;  1Q8C A;  3IMQ A;  4EYA A;  3D3C A;  1TZW A;  1TZU A;  1SQF A;  1TZT A;  1TZV A;  1EYV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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