3R51A

Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
151
structure length
151
Chain Sequence
QLAAHSDARSGPVGSNGGQFWSFRPVRPLNKIVLSFSGSPDQTLNLISITFSSNPTDIITVGGVGPEPLTYTETVNIDGDIIEISGMIANYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAYYTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Carbohydrate-binding protein
molecule keywords Ipomoelin
publication title Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus.
pubmed doi rcsb
source organism Ipomoea batatas
total genus 23
structure length 151
sequence length 151
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3r51A00
1X1VA 1C3KA 3LLZA 3VZGA 1TP8A 5J51A 2BMYA 1TOQA 1WS5A 2BN0A 1PXDA 1XXQA 5AV7A 3VY7A 3LM1A 2JZ4A 3LL1A 1UGXA 1KU8A 3P8SA 1J4SA 1KUJA 5J50A 5J4XA 1ZGRA 3R52A 3LL2A 3LL0A 3WOBA 1C3MA 1M26A 2BMZA 4AKCA 2GUCA 1JACA 1WS5C 4AKBA 3LLYA 3O44A 4MQ0A 5EXGA 4R6PA 2GUEA 1OUWA 3MIUA 1UH1A 3VZFA 3R50A 2NU5A 3LKYA 2GUXA 5J4TA 4WOGA 4R6QA 1JOTA 3WOCA 1J4TA 1XXRA 5JM1A 1WS4A 1J4UA 3VZEA 4R6NA 1UGYA 4R6RA 5BN6E 4PIFA 3MIVA 2NUOA 4PIUA 4PITA 1C3NA 4AK4A 4GX7A 3AQGA 3VY6A 1WS4C 1UGWA 3R51A 1VBPA 1UGYC 4DDNA 1UH0A 2GTYA 2HYQA 4PIKA 1VBOA 3APAA 1ZGSA 2GUDA 4AKDA 4R6OA 1XEZA 3MITA 1UGWC 2HYRA
chains in the Genus database with same CATH superfamily
1X1VA 1C3KA 3LLZA 3VZGA 1W99A 1TP8A 5J51A 2BMYA 1TOQA 4QX1A 1WS5A 2BN0A 2C9KA 1PXDA 1XXQA 5AV7A 1I5PA 3VY7A 3LM1A 2JZ4A 2QP2A 4ARXA 3LL1A 1UGXA 1KU8A 3P8SA 1J4SA 1KUJA 5J50A 5J4XA 1ZGRA 3TOWA 3R52A 3LL2A 3LL0A 3WOBA 1C3MA 1M26A 2BMZA 1VMOA 4AKCA 2GUCA 1JACA 1WS5C 4QX0A 4AKBA 1JI6A 3LLYA 3O44A 4MQ0A 5EXGA 4R6PA 3EB7A 2GUEA 4ARYA 1OUWA 3MIUA 1UH1A 3VZFA 3R50A 2NU5A 3LKYA 1DLCA 2GUXA 4QX2A 5J4TA 4WOGA 4R6QA 4D8MA 1JOTA 3WOCA 1J4TA 1XXRA 5JM1A 1WS4A 1J4UA 4W8JA 3VZEA 4R6NA 1UGYA 4R6RA 5BN6E 4PIFA 3MIVA 2NUOA 4PIUA 4PITA 4QX3A 1C3NA 4AK4A 4GX7A 3AQGA 3VY6A 1WS4C 1UGWA 3R51A 1VBPA 1UGYC 4MOAA 1CIYA 4DDNA 1UH0A 2GTYA 2HYQA 4PIKA 1VBOA 3APAA 1ZGSA 2GUDA 4AKDA 4R6OA 1XEZA 3MITA 1UGWC 2HYRA
chains in the Genus database with same CATH topology
1X1VA 1C3KA 3LLZA 3VZGA 1TP8A 5J51A 2BMYA 1TOQA 1WS5A 2BN0A 1PXDA 1XXQA 5AV7A 3VY7A 3LM1A 2JZ4A 3LL1A 1UGXA 1KU8A 3P8SA 1J4SA 1KUJA 5J50A 5J4XA 1ZGRA 3R52A 3LL2A 3LL0A 3WOBA 1C3MA 1M26A 2BMZA 4AKCA 2GUCA 1JACA 1WS5C 4AKBA 3LLYA 3O44A 4MQ0A 5EXGA 4R6PA 2GUEA 1OUWA 3MIUA 1UH1A 3VZFA 3R50A 2NU5A 3LKYA 2GUXA 5J4TA 4WOGA 4R6QA 1JOTA 3WOCA 1J4TA 1XXRA 5JM1A 1WS4A 1J4UA 3VZEA 4R6NA 1UGYA 4R6RA 5BN6E 4PIFA 3MIVA 2NUOA 4PIUA 4PITA 1C3NA 4AK4A 4GX7A 3AQGA 3VY6A 1WS4C 1UGWA 3R51A 1VBPA 1UGYC 4DDNA 1UH0A 2GTYA 2HYQA 4PIKA 1VBOA 3APAA 1ZGSA 2GUDA 4AKDA 4R6OA 1XEZA 3MITA 1UGWC 2HYRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X1V A;  1C3K A;  3LLZ A;  3VZG A;  1TP8 A;  5J51 A;  2BMY A;  1TOQ A;  1WS5 A;  2BN0 A;  1PXD A;  1XXQ A;  5AV7 A;  3VY7 A;  3LM1 A;  2JZ4 A;  3LL1 A;  1UGX A;  1KU8 A;  3P8S A;  1J4S A;  1KUJ A;  5J50 A;  5J4X A;  1ZGR A;  3R52 A;  3LL2 A;  3LL0 A;  3WOB A;  1C3M A;  1M26 A;  2BMZ A;  4AKC A;  2GUC A;  1JAC A;  1WS5 C;  4AKB A;  3LLY A;  3O44 A;  4MQ0 A;  5EXG A;  4R6P A;  2GUE A;  1OUW A;  3MIU A;  1UH1 A;  3VZF A;  3R50 A;  2NU5 A;  3LKY A;  2GUX A;  5J4T A;  4WOG A;  4R6Q A;  1JOT A;  3WOC A;  1J4T A;  1XXR A;  5JM1 A;  1WS4 A;  1J4U A;  3VZE A;  4R6N A;  1UGY A;  4R6R A;  5BN6 E;  4PIF A;  3MIV A;  2NUO A;  4PIU A;  4PIT A;  1C3N A;  4AK4 A;  4GX7 A;  3AQG A;  3VY6 A;  1WS4 C;  1UGW A;  3R51 A;  1VBP A;  1UGY C;  4DDN A;  1UH0 A;  2GTY A;  2HYQ A;  4PIK A;  1VBO A;  3APA A;  1ZGS A;  2GUD A;  4AKD A;  4R6O A;  1XEZ A;  3MIT A;  1UGW C;  2HYR A; 
#chains in the Genus database with same CATH topology
 1X1V A;  1C3K A;  3LLZ A;  3VZG A;  1W99 A;  1TP8 A;  5J51 A;  2BMY A;  1TOQ A;  4QX1 A;  1WS5 A;  2BN0 A;  2C9K A;  1PXD A;  1XXQ A;  5AV7 A;  1I5P A;  3VY7 A;  3LM1 A;  2JZ4 A;  2QP2 A;  4ARX A;  3LL1 A;  1UGX A;  1KU8 A;  3P8S A;  1J4S A;  1KUJ A;  5J50 A;  5J4X A;  1ZGR A;  3TOW A;  3R52 A;  3LL2 A;  3LL0 A;  3WOB A;  1C3M A;  1M26 A;  2BMZ A;  1VMO A;  4AKC A;  2GUC A;  1JAC A;  1WS5 C;  4QX0 A;  4AKB A;  1JI6 A;  3LLY A;  3O44 A;  4MQ0 A;  5EXG A;  4R6P A;  3EB7 A;  2GUE A;  4ARY A;  1OUW A;  3MIU A;  1UH1 A;  3VZF A;  3R50 A;  2NU5 A;  3LKY A;  1DLC A;  2GUX A;  4QX2 A;  5J4T A;  4WOG A;  4R6Q A;  4D8M A;  1JOT A;  3WOC A;  1J4T A;  1XXR A;  5JM1 A;  1WS4 A;  1J4U A;  4W8J A;  3VZE A;  4R6N A;  1UGY A;  4R6R A;  5BN6 E;  4PIF A;  3MIV A;  2NUO A;  4PIU A;  4PIT A;  4QX3 A;  1C3N A;  4AK4 A;  4GX7 A;  3AQG A;  3VY6 A;  1WS4 C;  1UGW A;  3R51 A;  1VBP A;  1UGY C;  4MOA A;  1CIY A;  4DDN A;  1UH0 A;  2GTY A;  2HYQ A;  4PIK A;  1VBO A;  3APA A;  1ZGS A;  2GUD A;  4AKD A;  4R6O A;  1XEZ A;  3MIT A;  1UGW C;  2HYR A; 
#chains in the Genus database with same CATH homology
 1X1V A;  1C3K A;  3LLZ A;  3VZG A;  1TP8 A;  5J51 A;  2BMY A;  1TOQ A;  1WS5 A;  2BN0 A;  1PXD A;  1XXQ A;  5AV7 A;  3VY7 A;  3LM1 A;  2JZ4 A;  3LL1 A;  1UGX A;  1KU8 A;  3P8S A;  1J4S A;  1KUJ A;  5J50 A;  5J4X A;  1ZGR A;  3R52 A;  3LL2 A;  3LL0 A;  3WOB A;  1C3M A;  1M26 A;  2BMZ A;  4AKC A;  2GUC A;  1JAC A;  1WS5 C;  4AKB A;  3LLY A;  3O44 A;  4MQ0 A;  5EXG A;  4R6P A;  2GUE A;  1OUW A;  3MIU A;  1UH1 A;  3VZF A;  3R50 A;  2NU5 A;  3LKY A;  2GUX A;  5J4T A;  4WOG A;  4R6Q A;  1JOT A;  3WOC A;  1J4T A;  1XXR A;  5JM1 A;  1WS4 A;  1J4U A;  3VZE A;  4R6N A;  1UGY A;  4R6R A;  5BN6 E;  4PIF A;  3MIV A;  2NUO A;  4PIU A;  4PIT A;  1C3N A;  4AK4 A;  4GX7 A;  3AQG A;  3VY6 A;  1WS4 C;  1UGW A;  3R51 A;  1VBP A;  1UGY C;  4DDN A;  1UH0 A;  2GTY A;  2HYQ A;  4PIK A;  1VBO A;  3APA A;  1ZGS A;  2GUD A;  4AKD A;  4R6O A;  1XEZ A;  3MIT A;  1UGW C;  2HYR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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