3RUBS

Crystal structure of the unactivated form of ribulose-1,5-bisphosphate carboxylase(slash)oxygenase from tobacco refined at 2.0-angstroms resolution
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
123
structure length
123
Chain Sequence
MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase(carbon-carbon)
molecule keywords RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, FORM III
publication title Crystal structure of the unactivated form of ribulose-1,5-bisphosphate carboxylase/oxygenase from tobacco refined at 2.0-A resolution.
pubmed rcsb
source organism Nicotiana tabacum
total genus 25
structure length 123
sequence length 123
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 1990-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 3rubS00
1UWAC 1BWVS 4F0KB 1RCOC 1UW9C 2V69I 4F0MB 1RBLI 3AXMS 1RBOC 1UPPI 2V63I 1WDDS 1GK8I 1IR21 1AA1C 4HHHS 3RUBS 1RLDS 2YBVB 3AXKS 1AUSS 1UZDC 2V67I 1IR1S 1SVDM 1UPMC 4RUBS 1BXNI 1RSCI 4F0HB 2VDII 1RXOC 2VDHI 2V68I 1RLCS 4MKVS 3ZXWB 1UZHC 2V6AI 1RCXC 1IWAB 8RUCI 1EJ7S
chains in the Genus database with same CATH superfamily
1UWAC 1BWVS 3FPNA 5DM60 4F0KB 1RCOC 1UW9C 2V69I 4F0MB 1RBLI 3AXMS 1RBOC 1UPPI 1MZPA 2V63I 1AD2A 1WDDS 1GK8I 2DFXI 1IR21 1AA1C 1DWUA 3TG8A 1I2AA 4HHHS 3RUBS 1RLDS 2YBVB 3AXKS 3QOYA 1AUSS 1UZDC 4QG3A 4F9TA 2V67I 1IR1S 1SVDM 1UPMC 4RUBS 1BXNI 1ZHOA 3UMYA 1RSCI 4F0HB 2VDII 1RXOC 4DFCB 3U56A 4QGBA 2VDHI 5DM70 2V68I 1RLCS 4MKVS 1CJSA 4REOA 1U63A 2FHZA 3ZXWB 2HW8A 4LQ4A 1UZHC 3U4MA 4QVIA 2V6AI 1RCXC 1IWAB 8RUCI 1EJ7S 3ZQJA
chains in the Genus database with same CATH topology
1UWAC 1BWVS 4F0KB 1RCOC 1UW9C 2V69I 4F0MB 1RBLI 3AXMS 1RBOC 1UPPI 2V63I 1WDDS 1GK8I 1IR21 1AA1C 4HHHS 3RUBS 1RLDS 2YBVB 3AXKS 1AUSS 1UZDC 2V67I 1IR1S 1SVDM 1UPMC 4RUBS 1BXNI 1RSCI 4F0HB 2VDII 1RXOC 2VDHI 2V68I 1RLCS 4MKVS 3ZXWB 1UZHC 2V6AI 1RCXC 1IWAB 8RUCI 1EJ7S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UWA C;  1BWV S;  4F0K B;  1RCO C;  1UW9 C;  2V69 I;  4F0M B;  1RBL I;  3AXM S;  1RBO C;  1UPP I;  2V63 I;  1WDD S;  1GK8 I;  1IR2 1;  1AA1 C;  4HHH S;  3RUB S;  1RLD S;  2YBV B;  3AXK S;  1AUS S;  1UZD C;  2V67 I;  1IR1 S;  1SVD M;  1UPM C;  4RUB S;  1BXN I;  1RSC I;  4F0H B;  2VDI I;  1RXO C;  2VDH I;  2V68 I;  1RLC S;  4MKV S;  3ZXW B;  1UZH C;  2V6A I;  1RCX C;  1IWA B;  8RUC I;  1EJ7 S; 
#chains in the Genus database with same CATH topology
 1UWA C;  1BWV S;  3FPN A;  5DM6 0;  4F0K B;  1RCO C;  1UW9 C;  2V69 I;  4F0M B;  1RBL I;  3AXM S;  1RBO C;  1UPP I;  1MZP A;  2V63 I;  1AD2 A;  1WDD S;  1GK8 I;  2DFX I;  1IR2 1;  1AA1 C;  1DWU A;  3TG8 A;  1I2A A;  4HHH S;  3RUB S;  1RLD S;  2YBV B;  3AXK S;  3QOY A;  1AUS S;  1UZD C;  4QG3 A;  4F9T A;  2V67 I;  1IR1 S;  1SVD M;  1UPM C;  4RUB S;  1BXN I;  1ZHO A;  3UMY A;  1RSC I;  4F0H B;  2VDI I;  1RXO C;  4DFC B;  3U56 A;  4QGB A;  2VDH I;  5DM7 0;  2V68 I;  1RLC S;  4MKV S;  1CJS A;  4REO A;  1U63 A;  2FHZ A;  3ZXW B;  2HW8 A;  4LQ4 A;  1UZH C;  3U4M A;  4QVI A;  2V6A I;  1RCX C;  1IWA B;  8RUC I;  1EJ7 S;  3ZQJ A; 
#chains in the Genus database with same CATH homology
 1UWA C;  1BWV S;  4F0K B;  1RCO C;  1UW9 C;  2V69 I;  4F0M B;  1RBL I;  3AXM S;  1RBO C;  1UPP I;  2V63 I;  1WDD S;  1GK8 I;  1IR2 1;  1AA1 C;  4HHH S;  3RUB S;  1RLD S;  2YBV B;  3AXK S;  1AUS S;  1UZD C;  2V67 I;  1IR1 S;  1SVD M;  1UPM C;  4RUB S;  1BXN I;  1RSC I;  4F0H B;  2VDI I;  1RXO C;  2VDH I;  2V68 I;  1RLC S;  4MKV S;  3ZXW B;  1UZH C;  2V6A I;  1RCX C;  1IWA B;  8RUC I;  1EJ7 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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