3RV1A

Crystal structure of the n-terminal and rnase iii domains of k. polysporus dcr1 e224q mutant
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
242
structure length
217
Chain Sequence
SNELKVREFYRLHNACVKLKESIKLIYENPLVTDQNVLNLGTAENTIDYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIAKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords K. polysporus Dcr1
publication title The inside-out mechanism of dicers from budding yeasts.
pubmed doi rcsb
source organism Vanderwaltozyma polyspora
total genus 79
structure length 217
sequence length 242
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3rv1A02
1.20.1270.260 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3rv1A01
1JFZA 3N3WA 1YZ9A 1RC7A 1YYWA 2A11A 3O2RB 3C4TA 2EB1A 2NUEA 4M2ZA 2EZ6A 3RV0A 1RC5A 1O0WA 2GSLA 1I4SA 3RV1A 2NUGA 2FFLA 2QVWA 1YYKA 3O2RA 4M30A 1U61A 2NUFA 4OOGC 1YYOA 3C4BA 4OUNA
chains in the Genus database with same CATH superfamily
4AZHA 2D1LA 3DX3A 3EJTA 1OA1A 4M2ZA 2PY6A 1URUA 2YIBA 2V0OA 1U00A 2N3KA 2F7PA 5E84A 2YIAA 2OO2A 4R5LA 3L3OM 4H8SA 3I01A 3D4ZA 2ND0A 4EZYA 3T46A 4H6HA 4EZOA 2X5CA 3I39X 3T48A 2F1BA 3D51A 4UDYX 3DPQA 3DX0A 3A98A 2YLLA 4HR1A 3D2FA 4AZCA 4OUNA 4D8JA 1ZYLA 2EX3B 3Q84A 4IWPA 3F7WA 3L3PA 2WYHA 2RAIA 3LLLA 3UITA 2GF4A 4WPCA 1SU7A 1PS3A 3BVWA 3I2WA 1ZWWA 4NPHA 3BLBA 4UDXX 4JL9A 5TKYA 2YL6A 1WDZA 2EFKA 4E81A 4EZZA 1GN9A 4JWDA 4IWQA 2D4CA 4JNEA 3DX4A 1TQUA 4EZSA 2QXLA 3LMFA 3C7NA 1I49A 3QWEA 4BNEA 1QWUA 3CAZA 4OOGC 2YL9A 3ZEDA 5FIGA 4IM2A 1R34A 4AZ6A 1E2UA 2NUEA 3D50A 4DCNC 2RAKA 3KAWA 3HAHA 3Q0KA 3QE6A 3DPPA 4R5IA 1ZTDA 2JNKA 3OWGA 1YYKA 3O2RA 1SU6A 3DDGA 3OHXM 2RT6A 4JN4A 1E9VA 3O3MB 3T4AG 1I4TA 3ACOA 4AZIA 1O0WA 3G9GA 4JWCA 2F1AA 4AKVA 1JQKA 2O0I1 3EJUA 3CVRA 4AZ5A 4M30A 2Q13A 2ND1A 2NUFA 2ELBA 4KIKB 3CV5A 5C5BB 3OK8A 1RC7A 3ERCC 4F00A 2EB1A 1QX1A 4AZGA 3RV1A 1GNTA 2QVWA 4EZWA 2YL8A 2OZNB 4IW0A 1SU8A 3DDFA 1JFZA 3BUQA 4EZXA 1I4LA 2EZ6A 4H6IA 4ATMA 1I4SA 3EJSA 2ALWA 1HWWA 3DX2A 1TQSA 1MJGA 3T47A 2JNSA 4B9QA 3ER9B 3LVTA 1X03A 4JLCA 4F01A 2F7RA 1Y2OA 4R5JA 1DKXA 4JWIA 2YLAA 2Z0VA 2PMRA 3EJRA 3DX1A 3CZNA 2C08A 2F7QA 1LQ7A 3SYVA 1W9MA 3SOGA 4AVMA 2OBLA 3CZSA 5KBPA 3HAJA 2OW6A 3QNJA 1TQTA 3D4YA 1YYOA 4E3CA 3BUPA 3ABHA 2X3WA 3BUBA 1YZ9A 4FZPA 3ER8C 4R5KA 1X04A 4EZPA 4NQIA 2ZXQA 2YIVX 2YL5A 3DYTA 2GSLA 1HXKA 1E1DA 3T49A 2OBMA 1DKYA 3HAIA 2EWFA 3O3NB 2Z0OA 3KDRA 2Q12A 1U61A 3BVUA 3B51X 4NSWA 1R5EA 3DPOA 1TQVA 3RPMA 3C4TA 1R33A 4HR1B 4R5GA 4AZCB 2FYVA 3VKHA 1SUFA 3B52X 2WYIA 2LM0A 3EJQA 1DKZA 3FD9A 2A11A 1O7DB 3BUDA 4AZ7A 3BVTA 2Z0NA 4FZSA 4KIKA 5C5BA 3CKDA 2F18A 1O7DC 2EFLA 1QWNA 4EZRA 2X3XA 1GNLA 3C4BA 4M0MA 4EZUA 3N3WA 4JWEA 2QKWA 2LXYA 4HY9A 3D52A 1YYWA 2KHOA 2RAJA 4FM3A 5FLEX 4PO2A 2FICA 3I04A 1TQWA 3RV0A 1OAOA 2NUGA 4EZVA 2FFLA 4IWOA 4WPEA 3VEAA 2WINM 1UPXA 3KAVA 2Z8YA 3O2RB 4JNFA 3GI7A 4EZNA 1I4DA 2MI7A 4G6QA 4IM3A 2QFFA 2YI9A 4I1QA 3QNIA 2F7OA 4EZQA 4IM0A 2GA9D 3QA8A 4EZTA 3B53X 4AZBA 2OW7A 1HTYA 3D2EA 3M3WA 3BUIA 3BVVA 4HYBA 1YWMA 2YKTA 2GAFD 1OA0A 4FZOA 1RC5A 3PLTA 3BVXA 4DYLA 2NCZA 2YI8A 3O3OB 2X3VA 3VEBA 3EJPA
chains in the Genus database with same CATH topology
3FD9A 1MJGA 5FIGA 4IM2A 3T47A 3ZEDA 2JNSA 4B9QA 2A11A 3ER9B 1E2UA 1OA1A 2NUEA 4JLCA 4F01A 4M2ZA 4R5JA 4KIKA 1DKXA 3KAWA 4JWIA 3DPPA 2PY6A 4R5IA 3OWGA 1YYKA 2YIBA 3O2RA 4EZRA 1SU6A 1U00A 2N3KA 5E84A 2YIAA 1GNLA 3C4BA 4M0MA 4R5LA 4EZUA 3N3WA 4JWEA 3L3OM 4HY9A 1YYWA 2KHOA 2RT6A 3OHXM 4JN4A 1E9VA 3I01A 3O3MB 1W9MA 4FM3A 5FLEX 4PO2A 3T4AG 2ND0A 3I04A 4EZYA 3T46A 2OBLA 4H6HA 3RV0A 4EZOA 1O0WA 1OAOA 2X5CA 3I39X 4JWCA 3T48A 2NUGA 4EZVA 2FFLA 1JQKA 4UDYX 4IWOA 3DPQA 3QNJA 4M30A 2ND1A 3VEAA 2NUFA 3A98A 4KIKB 2WINM 1UPXA 1YYOA 3D2FA 4OUNA 4HR1A 4E3CA 4D8JA 3KAVA 1ZYLA 2EX3B 4IWPA 2Z8YA 1YZ9A 3F7WA 1RC7A 3ER8C 3ERCC 4F00A 4R5KA 4EZPA 3O2RB 2EB1A 4JNFA 3GI7A 2YIVX 4EZNA 4G6QA 4IM3A 3UITA 2QFFA 2YI9A 2GSLA 3RV1A 1SU7A 1E1DA 3T49A 1GNTA 2OBMA 1DKYA 2QVWA 2EWFA 4EZQA 3O3NB 4NPHA 4IM0A 3KDRA 4EZWA 1U61A 2GA9D 3QA8A 4EZTA 3B53X 4IW0A 3B51X 4UDXX 4JL9A 5TKYA 1SU8A 1JFZA 4EZXA 3DPOA 3D2EA 4E81A 4EZZA 1GN9A 4JWDA 4IWQA 3C4TA 4HYBA 4HR1B 4JNEA 4R5GA 2EZ6A 2GAFD 4EZSA 1OA0A 4H6IA 1RC5A 2QXLA 3VKHA 1I4SA 1SUFA 3B52X 2NCZA 2YI8A 3C7NA 3LMFA 2LM0A 3O3OB 4OOGC 3VEBA 1DKZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JFZ A;  3N3W A;  1YZ9 A;  1RC7 A;  1YYW A;  2A11 A;  3O2R B;  3C4T A;  2EB1 A;  2NUE A;  4M2Z A;  2EZ6 A;  3RV0 A;  1RC5 A;  1O0W A;  2GSL A;  1I4S A;  3RV1 A;  2NUG A;  2FFL A;  2QVW A;  1YYK A;  3O2R A;  4M30 A;  1U61 A;  2NUF A;  4OOG C;  1YYO A;  3C4B A;  4OUN A; 
#chains in the Genus database with same CATH topology
 4AZH A;  2D1L A;  3DX3 A;  3EJT A;  1OA1 A;  4M2Z A;  2PY6 A;  1URU A;  2YIB A;  2V0O A;  1U00 A;  2N3K A;  2F7P A;  5E84 A;  2YIA A;  2OO2 A;  4R5L A;  3L3O M;  4H8S A;  3I01 A;  3D4Z A;  2ND0 A;  4EZY A;  3T46 A;  4H6H A;  4EZO A;  2X5C A;  3I39 X;  3T48 A;  2F1B A;  3D51 A;  4UDY X;  3DPQ A;  3DX0 A;  3A98 A;  2YLL A;  4HR1 A;  3D2F A;  4AZC A;  4OUN A;  4D8J A;  1ZYL A;  2EX3 B;  3Q84 A;  4IWP A;  3F7W A;  3L3P A;  2WYH A;  2RAI A;  3LLL A;  3UIT A;  2GF4 A;  4WPC A;  1SU7 A;  1PS3 A;  3BVW A;  3I2W A;  1ZWW A;  4NPH A;  3BLB A;  4UDX X;  4JL9 A;  5TKY A;  2YL6 A;  1WDZ A;  2EFK A;  4E81 A;  4EZZ A;  1GN9 A;  4JWD A;  4IWQ A;  2D4C A;  4JNE A;  3DX4 A;  1TQU A;  4EZS A;  2QXL A;  3LMF A;  3C7N A;  1I49 A;  3QWE A;  4BNE A;  1QWU A;  3CAZ A;  4OOG C;  2YL9 A;  3ZED A;  5FIG A;  4IM2 A;  1R34 A;  4AZ6 A;  1E2U A;  2NUE A;  3D50 A;  4DCN C;  2RAK A;  3KAW A;  3HAH A;  3Q0K A;  3QE6 A;  3DPP A;  4R5I A;  1ZTD A;  2JNK A;  3OWG A;  1YYK A;  3O2R A;  1SU6 A;  3DDG A;  3OHX M;  2RT6 A;  4JN4 A;  1E9V A;  3O3M B;  3T4A G;  1I4T A;  3ACO A;  4AZI A;  1O0W A;  3G9G A;  4JWC A;  2F1A A;  4AKV A;  1JQK A;  2O0I 1;  3EJU A;  3CVR A;  4AZ5 A;  4M30 A;  2Q13 A;  2ND1 A;  2NUF A;  2ELB A;  4KIK B;  3CV5 A;  5C5B B;  3OK8 A;  1RC7 A;  3ERC C;  4F00 A;  2EB1 A;  1QX1 A;  4AZG A;  3RV1 A;  1GNT A;  2QVW A;  4EZW A;  2YL8 A;  2OZN B;  4IW0 A;  1SU8 A;  3DDF A;  1JFZ A;  3BUQ A;  4EZX A;  1I4L A;  2EZ6 A;  4H6I A;  4ATM A;  1I4S A;  3EJS A;  2ALW A;  1HWW A;  3DX2 A;  1TQS A;  1MJG A;  3T47 A;  2JNS A;  4B9Q A;  3ER9 B;  3LVT A;  1X03 A;  4JLC A;  4F01 A;  2F7R A;  1Y2O A;  4R5J A;  1DKX A;  4JWI A;  2YLA A;  2Z0V A;  2PMR A;  3EJR A;  3DX1 A;  3CZN A;  2C08 A;  2F7Q A;  1LQ7 A;  3SYV A;  1W9M A;  3SOG A;  4AVM A;  2OBL A;  3CZS A;  5KBP A;  3HAJ A;  2OW6 A;  3QNJ A;  1TQT A;  3D4Y A;  1YYO A;  4E3C A;  3BUP A;  3ABH A;  2X3W A;  3BUB A;  1YZ9 A;  4FZP A;  3ER8 C;  4R5K A;  1X04 A;  4EZP A;  4NQI A;  2ZXQ A;  2YIV X;  2YL5 A;  3DYT A;  2GSL A;  1HXK A;  1E1D A;  3T49 A;  2OBM A;  1DKY A;  3HAI A;  2EWF A;  3O3N B;  2Z0O A;  3KDR A;  2Q12 A;  1U61 A;  3BVU A;  3B51 X;  4NSW A;  1R5E A;  3DPO A;  1TQV A;  3RPM A;  3C4T A;  1R33 A;  4HR1 B;  4R5G A;  4AZC B;  2FYV A;  3VKH A;  1SUF A;  3B52 X;  2WYI A;  2LM0 A;  3EJQ A;  1DKZ A;  3FD9 A;  2A11 A;  1O7D B;  3BUD A;  4AZ7 A;  3BVT A;  2Z0N A;  4FZS A;  4KIK A;  5C5B A;  3CKD A;  2F18 A;  1O7D C;  2EFL A;  1QWN A;  4EZR A;  2X3X A;  1GNL A;  3C4B A;  4M0M A;  4EZU A;  3N3W A;  4JWE A;  2QKW A;  2LXY A;  4HY9 A;  3D52 A;  1YYW A;  2KHO A;  2RAJ A;  4FM3 A;  5FLE X;  4PO2 A;  2FIC A;  3I04 A;  1TQW A;  3RV0 A;  1OAO A;  2NUG A;  4EZV A;  2FFL A;  4IWO A;  4WPE A;  3VEA A;  2WIN M;  1UPX A;  3KAV A;  2Z8Y A;  3O2R B;  4JNF A;  3GI7 A;  4EZN A;  1I4D A;  2MI7 A;  4G6Q A;  4IM3 A;  2QFF A;  2YI9 A;  4I1Q A;  3QNI A;  2F7O A;  4EZQ A;  4IM0 A;  2GA9 D;  3QA8 A;  4EZT A;  3B53 X;  4AZB A;  2OW7 A;  1HTY A;  3D2E A;  3M3W A;  3BUI A;  3BVV A;  4HYB A;  1YWM A;  2YKT A;  2GAF D;  1OA0 A;  4FZO A;  1RC5 A;  3PLT A;  3BVX A;  4DYL A;  2NCZ A;  2YI8 A;  3O3O B;  2X3V A;  3VEB A;  3EJP A; 
#chains in the Genus database with same CATH homology
 3FD9 A;  1MJG A;  5FIG A;  4IM2 A;  3T47 A;  3ZED A;  2JNS A;  4B9Q A;  2A11 A;  3ER9 B;  1E2U A;  1OA1 A;  2NUE A;  4JLC A;  4F01 A;  4M2Z A;  4R5J A;  4KIK A;  1DKX A;  3KAW A;  4JWI A;  3DPP A;  2PY6 A;  4R5I A;  3OWG A;  1YYK A;  2YIB A;  3O2R A;  4EZR A;  1SU6 A;  1U00 A;  2N3K A;  5E84 A;  2YIA A;  1GNL A;  3C4B A;  4M0M A;  4R5L A;  4EZU A;  3N3W A;  4JWE A;  3L3O M;  4HY9 A;  1YYW A;  2KHO A;  2RT6 A;  3OHX M;  4JN4 A;  1E9V A;  3I01 A;  3O3M B;  1W9M A;  4FM3 A;  5FLE X;  4PO2 A;  3T4A G;  2ND0 A;  3I04 A;  4EZY A;  3T46 A;  2OBL A;  4H6H A;  3RV0 A;  4EZO A;  1O0W A;  1OAO A;  2X5C A;  3I39 X;  4JWC A;  3T48 A;  2NUG A;  4EZV A;  2FFL A;  1JQK A;  4UDY X;  4IWO A;  3DPQ A;  3QNJ A;  4M30 A;  2ND1 A;  3VEA A;  2NUF A;  3A98 A;  4KIK B;  2WIN M;  1UPX A;  1YYO A;  3D2F A;  4OUN A;  4HR1 A;  4E3C A;  4D8J A;  3KAV A;  1ZYL A;  2EX3 B;  4IWP A;  2Z8Y A;  1YZ9 A;  3F7W A;  1RC7 A;  3ER8 C;  3ERC C;  4F00 A;  4R5K A;  4EZP A;  3O2R B;  2EB1 A;  4JNF A;  3GI7 A;  2YIV X;  4EZN A;  4G6Q A;  4IM3 A;  3UIT A;  2QFF A;  2YI9 A;  2GSL A;  3RV1 A;  1SU7 A;  1E1D A;  3T49 A;  1GNT A;  2OBM A;  1DKY A;  2QVW A;  2EWF A;  4EZQ A;  3O3N B;  4NPH A;  4IM0 A;  3KDR A;  4EZW A;  1U61 A;  2GA9 D;  3QA8 A;  4EZT A;  3B53 X;  4IW0 A;  3B51 X;  4UDX X;  4JL9 A;  5TKY A;  1SU8 A;  1JFZ A;  4EZX A;  3DPO A;  3D2E A;  4E81 A;  4EZZ A;  1GN9 A;  4JWD A;  4IWQ A;  3C4T A;  4HYB A;  4HR1 B;  4JNE A;  4R5G A;  2EZ6 A;  2GAF D;  4EZS A;  1OA0 A;  4H6I A;  1RC5 A;  2QXL A;  3VKH A;  1I4S A;  1SUF A;  3B52 X;  2NCZ A;  2YI8 A;  3C7N A;  3LMF A;  2LM0 A;  3O3O B;  4OOG C;  3VEB A;  1DKZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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