3S18A

Crystal structure of a plant albumin from cicer arietinum showing hemagglutination
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
224
structure length
224
Chain Sequence
GYINAAFRSSRNNEAYLFINDKYVLLDYAPGTSNDKVLYGPSFVRDGYKSLAKTIFGTYGIDCSFDTEYNEAFIFYENFCARIDYAPHSDKDKIISGPKKIADMFPFFKGTVFENGIDAAFRSTKGKEVYLFKGDKYARIDYLTNRLVQNKSISDTGFPCLRGTIFEAGMDSAFASHKTNEAYLFKGEYYARINFTPGSTNDIMGGVKKTLDYWPSLRGIIPLE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Sugar binding protein
molecule keywords lectin
publication title Crystal structure of a plant albumin from Cicer arietinum (chickpea) possessing hemopexin fold and hemagglutination activity
pubmed doi rcsb
total genus 48
structure length 224
sequence length 224
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 3s18A00
1HXNA 4FU4A 1QJSA 4LL2A 4YEHA 1QHUA 1PEXA 1GXDA 4FVLA 3S18A 1ITVA 2CLTA 1CK7A 3BA0A 4G0DA 4OEIA 1SU3A 3OYOA 4HSDA 4AUOA 2JXYA 2MQSA 3V6NA 4RT6B 3C7XA 1GENA 3LP9A 1FBLA 1RTGA
chains in the Genus database with same CATH superfamily
1HXNA 4FU4A 1QJSA 4LL2A 4YEHA 1QHUA 1PEXA 1GXDA 4FVLA 3S18A 1ITVA 2CLTA 1CK7A 3BA0A 4G0DA 4OEIA 1SU3A 3OYOA 4HSDA 4AUOA 2JXYA 2MQSA 3V6NA 4RT6B 3C7XA 1GENA 3LP9A 1FBLA 1RTGA
chains in the Genus database with same CATH topology
1HXNA 4FU4A 1QJSA 4LL2A 4YEHA 1QHUA 1PEXA 1GXDA 4FVLA 3S18A 1ITVA 2CLTA 1CK7A 3BA0A 4G0DA 4OEIA 1SU3A 3OYOA 4HSDA 4AUOA 2JXYA 2MQSA 3V6NA 4RT6B 3C7XA 1GENA 3LP9A 1FBLA 1RTGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HXN A;  4FU4 A;  1QJS A;  4LL2 A;  4YEH A;  1QHU A;  1PEX A;  1GXD A;  4FVL A;  3S18 A;  1ITV A;  2CLT A;  1CK7 A;  3BA0 A;  4G0D A;  4OEI A;  1SU3 A;  3OYO A;  4HSD A;  4AUO A;  2JXY A;  2MQS A;  3V6N A;  4RT6 B;  3C7X A;  1GEN A;  3LP9 A;  1FBL A;  1RTG A; 
#chains in the Genus database with same CATH topology
 1HXN A;  4FU4 A;  1QJS A;  4LL2 A;  4YEH A;  1QHU A;  1PEX A;  1GXD A;  4FVL A;  3S18 A;  1ITV A;  2CLT A;  1CK7 A;  3BA0 A;  4G0D A;  4OEI A;  1SU3 A;  3OYO A;  4HSD A;  4AUO A;  2JXY A;  2MQS A;  3V6N A;  4RT6 B;  3C7X A;  1GEN A;  3LP9 A;  1FBL A;  1RTG A; 
#chains in the Genus database with same CATH homology
 1HXN A;  4FU4 A;  1QJS A;  4LL2 A;  4YEH A;  1QHU A;  1PEX A;  1GXD A;  4FVL A;  3S18 A;  1ITV A;  2CLT A;  1CK7 A;  3BA0 A;  4G0D A;  4OEI A;  1SU3 A;  3OYO A;  4HSD A;  4AUO A;  2JXY A;  2MQS A;  3V6N A;  4RT6 B;  3C7X A;  1GEN A;  3LP9 A;  1FBL A;  1RTG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...