3S4FA

Crystal structure of the complex of bovine lactoperoxidase with 1h-pyrazolo[4,3-c] pyridine at 1.99 a resolution
Total Genus 191
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
191
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Crystal structure of the complex of bovine lactoperoxidase with 1H-pyrazolo[4,3-c] pyridine at 1.99 A resolution
rcsb
total genus 191
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2011-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 3s4fA00
3N8WB 3ERIA 5JW1A 2QRBA 5IKQA 2O86A 3NT1A 3GC1A 3NYHA 5COXA 3I6NA 5FF1A 1FE2A 3R5OA 3N8ZA 1IGXA 4Z0LA 4M10A 3MQEA 3V6QA 5JVZA 4KVLA 1PXXA 3S4FA 1EQGA 3F9PC 3NIUA 2IKCA 4QYQA 3TZIA 1MHLC 3N8YA 4PH9A 4HHRA 2E9EA 5IKTA 2OYUP 3KRKA 3N8VA 2R5LA 1PTHA 4KVKA 5GLSA 3SXVA 3Q7DA 4DL1C 6COXA 4KVJA 1PGEA 2IPSA 4KSZA 4NJBA 4MSFA 4GM7A 3ZS0C 3GCJA 1HT8A 2PUMA 3LN0A 4NT3A 5FDQA 2OYEP 3NTBA 1MYPC 2PT3A 4E1GA 1IGZA 3GCLA 4IG5A 1CQEA 2Z5ZA 4OTYA 3OLUA 5F19A 1D7WC 4GN6A 5KIRA 3HS5A 3N8XA 3N8YB 3N8FA 3GCKA 1CXPC 3QF1A 3HS7A 5B72A 3QMOA 1DDXA 4OEKA 3R55A 4RRWA 2QPKA 1CX2A 4FM5A 2AYLA 2EFBA 3NAKA 3RKEA 2OJVA 3R5QA 1Q4GA 4M11A 3BXIA 3N8WA 2EHAA 3FNLA 3OLTA 1EBVA 3LN1A 1CVUA 1PRHA 3RR3A 1D2VC 5F1AA 3FAQA 3UBAA 5JVYA 3NTGA 4RS0A 1DIYA 4C1MC 3ERHA 4QJQA 3ZS1C 4N7AA 1D5LC 2QQTA 4RUTA 3OGWA 1DNUC 4HHSA 3KRQA 5HPWA 1HT5A 1U67A 4RRYA 1DNWC 1EQHA 3PGHA 3R4XA 4LJJA 3PY4A 4Y55A 5IKVA 3Q9KA 4OTJA 2GJMA 4RRXA 3QL6A 3TGYA 3MDLA 4PNXA 5FIWC 2NQXA 3KK6A 4RRZA 3QH0A 5GH0A 5IKRA 4COXA 3HS6A 4O1ZA
chains in the Genus database with same CATH superfamily
3N8WB 3ERIA 5JW1A 2QRBA 5IKQA 2O86A 3NT1A 3GC1A 3NYHA 5COXA 3I6NA 5FF1A 1FE2A 3R5OA 3N8ZA 1IGXA 4Z0LA 4M10A 3MQEA 3V6QA 5JVZA 4KVLA 1PXXA 3S4FA 1EQGA 3F9PC 3NIUA 2IKCA 4QYQA 3TZIA 1MHLC 3N8YA 4PH9A 4HHRA 2E9EA 5IKTA 2OYUP 3KRKA 3N8VA 2R5LA 1PTHA 4KVKA 5GLSA 3SXVA 3Q7DA 4DL1C 6COXA 4KVJA 1PGEA 2IPSA 4KSZA 4NJBA 4MSFA 4GM7A 3ZS0C 3GCJA 1HT8A 2PUMA 3LN0A 4NT3A 5FDQA 2OYEP 3NTBA 1MYPC 2PT3A 4E1GA 1IGZA 3GCLA 4IG5A 1CQEA 2Z5ZA 4OTYA 3OLUA 5F19A 1D7WC 4GN6A 5KIRA 3HS5A 3N8XA 3N8YB 3N8FA 3GCKA 1CXPC 3QF1A 3HS7A 5B72A 3QMOA 1DDXA 4OEKA 3R55A 4RRWA 2QPKA 1CX2A 4FM5A 2AYLA 2EFBA 3NAKA 3RKEA 2OJVA 3R5QA 1Q4GA 4M11A 3BXIA 3N8WA 2EHAA 3FNLA 3OLTA 1EBVA 3LN1A 1CVUA 1PRHA 3RR3A 1D2VC 5F1AA 3FAQA 3UBAA 5JVYA 3NTGA 4RS0A 1DIYA 4C1MC 3ERHA 4QJQA 3ZS1C 4N7AA 1D5LC 2QQTA 4RUTA 3OGWA 1DNUC 4HHSA 3KRQA 5HPWA 1HT5A 1U67A 4RRYA 1DNWC 1EQHA 3PGHA 3R4XA 4LJJA 3PY4A 4Y55A 5IKVA 3Q9KA 4OTJA 2GJMA 4RRXA 3QL6A 3TGYA 3MDLA 4PNXA 5FIWC 2NQXA 3KK6A 4RRZA 3QH0A 5GH0A 5IKRA 4COXA 3HS6A 4O1ZA
chains in the Genus database with same CATH topology
3N8WB 3ERIA 5JW1A 2QRBA 5IKQA 2O86A 3NT1A 3GC1A 3NYHA 5COXA 3I6NA 5FF1A 1FE2A 3R5OA 3N8ZA 1IGXA 4Z0LA 4M10A 3MQEA 3V6QA 5JVZA 4KVLA 1PXXA 3S4FA 1EQGA 3F9PC 3NIUA 2IKCA 4QYQA 3TZIA 1MHLC 3N8YA 4PH9A 4HHRA 2E9EA 5IKTA 2OYUP 3KRKA 3N8VA 2R5LA 1PTHA 4KVKA 5GLSA 3SXVA 3Q7DA 4DL1C 6COXA 4KVJA 1PGEA 2IPSA 4KSZA 4NJBA 4MSFA 4GM7A 3ZS0C 3GCJA 1HT8A 2PUMA 3LN0A 4NT3A 5FDQA 2OYEP 3NTBA 1MYPC 2PT3A 4E1GA 1IGZA 3GCLA 4IG5A 1CQEA 2Z5ZA 4OTYA 3OLUA 5F19A 1D7WC 4GN6A 5KIRA 3HS5A 3N8XA 3N8YB 3N8FA 3GCKA 1CXPC 3QF1A 3HS7A 5B72A 3QMOA 1DDXA 4OEKA 3R55A 4RRWA 2QPKA 1CX2A 4FM5A 2AYLA 2EFBA 3NAKA 3RKEA 2OJVA 3R5QA 1Q4GA 4M11A 3BXIA 3N8WA 2EHAA 3FNLA 3OLTA 1EBVA 3LN1A 1CVUA 1PRHA 3RR3A 1D2VC 5F1AA 3FAQA 3UBAA 5JVYA 3NTGA 4RS0A 1DIYA 4C1MC 3ERHA 4QJQA 3ZS1C 4N7AA 1D5LC 2QQTA 4RUTA 3OGWA 1DNUC 4HHSA 3KRQA 5HPWA 1HT5A 1U67A 4RRYA 1DNWC 1EQHA 3PGHA 3R4XA 4LJJA 3PY4A 4Y55A 5IKVA 3Q9KA 4OTJA 2GJMA 4RRXA 3QL6A 3TGYA 3MDLA 4PNXA 5FIWC 2NQXA 3KK6A 4RRZA 3QH0A 5GH0A 5IKRA 4COXA 3HS6A 4O1ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N8W B;  3ERI A;  5JW1 A;  2QRB A;  5IKQ A;  2O86 A;  3NT1 A;  3GC1 A;  3NYH A;  5COX A;  3I6N A;  5FF1 A;  1FE2 A;  3R5O A;  3N8Z A;  1IGX A;  4Z0L A;  4M10 A;  3MQE A;  3V6Q A;  5JVZ A;  4KVL A;  1PXX A;  3S4F A;  1EQG A;  3F9P C;  3NIU A;  2IKC A;  4QYQ A;  3TZI A;  1MHL C;  3N8Y A;  4PH9 A;  4HHR A;  2E9E A;  5IKT A;  2OYU P;  3KRK A;  3N8V A;  2R5L A;  1PTH A;  4KVK A;  5GLS A;  3SXV A;  3Q7D A;  4DL1 C;  6COX A;  4KVJ A;  1PGE A;  2IPS A;  4KSZ A;  4NJB A;  4MSF A;  4GM7 A;  3ZS0 C;  3GCJ A;  1HT8 A;  2PUM A;  3LN0 A;  4NT3 A;  5FDQ A;  2OYE P;  3NTB A;  1MYP C;  2PT3 A;  4E1G A;  1IGZ A;  3GCL A;  4IG5 A;  1CQE A;  2Z5Z A;  4OTY A;  3OLU A;  5F19 A;  1D7W C;  4GN6 A;  5KIR A;  3HS5 A;  3N8X A;  3N8Y B;  3N8F A;  3GCK A;  1CXP C;  3QF1 A;  3HS7 A;  5B72 A;  3QMO A;  1DDX A;  4OEK A;  3R55 A;  4RRW A;  2QPK A;  1CX2 A;  4FM5 A;  2AYL A;  2EFB A;  3NAK A;  3RKE A;  2OJV A;  3R5Q A;  1Q4G A;  4M11 A;  3BXI A;  3N8W A;  2EHA A;  3FNL A;  3OLT A;  1EBV A;  3LN1 A;  1CVU A;  1PRH A;  3RR3 A;  1D2V C;  5F1A A;  3FAQ A;  3UBA A;  5JVY A;  3NTG A;  4RS0 A;  1DIY A;  4C1M C;  3ERH A;  4QJQ A;  3ZS1 C;  4N7A A;  1D5L C;  2QQT A;  4RUT A;  3OGW A;  1DNU C;  4HHS A;  3KRQ A;  5HPW A;  1HT5 A;  1U67 A;  4RRY A;  1DNW C;  1EQH A;  3PGH A;  3R4X A;  4LJJ A;  3PY4 A;  4Y55 A;  5IKV A;  3Q9K A;  4OTJ A;  2GJM A;  4RRX A;  3QL6 A;  3TGY A;  3MDL A;  4PNX A;  5FIW C;  2NQX A;  3KK6 A;  4RRZ A;  3QH0 A;  5GH0 A;  5IKR A;  4COX A;  3HS6 A;  4O1Z A; 
#chains in the Genus database with same CATH topology
 3N8W B;  3ERI A;  5JW1 A;  2QRB A;  5IKQ A;  2O86 A;  3NT1 A;  3GC1 A;  3NYH A;  5COX A;  3I6N A;  5FF1 A;  1FE2 A;  3R5O A;  3N8Z A;  1IGX A;  4Z0L A;  4M10 A;  3MQE A;  3V6Q A;  5JVZ A;  4KVL A;  1PXX A;  3S4F A;  1EQG A;  3F9P C;  3NIU A;  2IKC A;  4QYQ A;  3TZI A;  1MHL C;  3N8Y A;  4PH9 A;  4HHR A;  2E9E A;  5IKT A;  2OYU P;  3KRK A;  3N8V A;  2R5L A;  1PTH A;  4KVK A;  5GLS A;  3SXV A;  3Q7D A;  4DL1 C;  6COX A;  4KVJ A;  1PGE A;  2IPS A;  4KSZ A;  4NJB A;  4MSF A;  4GM7 A;  3ZS0 C;  3GCJ A;  1HT8 A;  2PUM A;  3LN0 A;  4NT3 A;  5FDQ A;  2OYE P;  3NTB A;  1MYP C;  2PT3 A;  4E1G A;  1IGZ A;  3GCL A;  4IG5 A;  1CQE A;  2Z5Z A;  4OTY A;  3OLU A;  5F19 A;  1D7W C;  4GN6 A;  5KIR A;  3HS5 A;  3N8X A;  3N8Y B;  3N8F A;  3GCK A;  1CXP C;  3QF1 A;  3HS7 A;  5B72 A;  3QMO A;  1DDX A;  4OEK A;  3R55 A;  4RRW A;  2QPK A;  1CX2 A;  4FM5 A;  2AYL A;  2EFB A;  3NAK A;  3RKE A;  2OJV A;  3R5Q A;  1Q4G A;  4M11 A;  3BXI A;  3N8W A;  2EHA A;  3FNL A;  3OLT A;  1EBV A;  3LN1 A;  1CVU A;  1PRH A;  3RR3 A;  1D2V C;  5F1A A;  3FAQ A;  3UBA A;  5JVY A;  3NTG A;  4RS0 A;  1DIY A;  4C1M C;  3ERH A;  4QJQ A;  3ZS1 C;  4N7A A;  1D5L C;  2QQT A;  4RUT A;  3OGW A;  1DNU C;  4HHS A;  3KRQ A;  5HPW A;  1HT5 A;  1U67 A;  4RRY A;  1DNW C;  1EQH A;  3PGH A;  3R4X A;  4LJJ A;  3PY4 A;  4Y55 A;  5IKV A;  3Q9K A;  4OTJ A;  2GJM A;  4RRX A;  3QL6 A;  3TGY A;  3MDL A;  4PNX A;  5FIW C;  2NQX A;  3KK6 A;  4RRZ A;  3QH0 A;  5GH0 A;  5IKR A;  4COX A;  3HS6 A;  4O1Z A; 
#chains in the Genus database with same CATH homology
 3N8W B;  3ERI A;  5JW1 A;  2QRB A;  5IKQ A;  2O86 A;  3NT1 A;  3GC1 A;  3NYH A;  5COX A;  3I6N A;  5FF1 A;  1FE2 A;  3R5O A;  3N8Z A;  1IGX A;  4Z0L A;  4M10 A;  3MQE A;  3V6Q A;  5JVZ A;  4KVL A;  1PXX A;  3S4F A;  1EQG A;  3F9P C;  3NIU A;  2IKC A;  4QYQ A;  3TZI A;  1MHL C;  3N8Y A;  4PH9 A;  4HHR A;  2E9E A;  5IKT A;  2OYU P;  3KRK A;  3N8V A;  2R5L A;  1PTH A;  4KVK A;  5GLS A;  3SXV A;  3Q7D A;  4DL1 C;  6COX A;  4KVJ A;  1PGE A;  2IPS A;  4KSZ A;  4NJB A;  4MSF A;  4GM7 A;  3ZS0 C;  3GCJ A;  1HT8 A;  2PUM A;  3LN0 A;  4NT3 A;  5FDQ A;  2OYE P;  3NTB A;  1MYP C;  2PT3 A;  4E1G A;  1IGZ A;  3GCL A;  4IG5 A;  1CQE A;  2Z5Z A;  4OTY A;  3OLU A;  5F19 A;  1D7W C;  4GN6 A;  5KIR A;  3HS5 A;  3N8X A;  3N8Y B;  3N8F A;  3GCK A;  1CXP C;  3QF1 A;  3HS7 A;  5B72 A;  3QMO A;  1DDX A;  4OEK A;  3R55 A;  4RRW A;  2QPK A;  1CX2 A;  4FM5 A;  2AYL A;  2EFB A;  3NAK A;  3RKE A;  2OJV A;  3R5Q A;  1Q4G A;  4M11 A;  3BXI A;  3N8W A;  2EHA A;  3FNL A;  3OLT A;  1EBV A;  3LN1 A;  1CVU A;  1PRH A;  3RR3 A;  1D2V C;  5F1A A;  3FAQ A;  3UBA A;  5JVY A;  3NTG A;  4RS0 A;  1DIY A;  4C1M C;  3ERH A;  4QJQ A;  3ZS1 C;  4N7A A;  1D5L C;  2QQT A;  4RUT A;  3OGW A;  1DNU C;  4HHS A;  3KRQ A;  5HPW A;  1HT5 A;  1U67 A;  4RRY A;  1DNW C;  1EQH A;  3PGH A;  3R4X A;  4LJJ A;  3PY4 A;  4Y55 A;  5IKV A;  3Q9K A;  4OTJ A;  2GJM A;  4RRX A;  3QL6 A;  3TGY A;  3MDL A;  4PNX A;  5FIW C;  2NQX A;  3KK6 A;  4RRZ A;  3QH0 A;  5GH0 A;  5IKR A;  4COX A;  3HS6 A;  4O1Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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