3S8BA

Structure of yeast ribonucleotide reductase 1 with amppnp and cdp
Total Genus 242
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
242
sequence length
667
structure length
659
Chain Sequence
RIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDEFEALYTRYEKEGRGKTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Ribonucleoside-diphosphate reductase large chain 1
publication title Structural and biochemical basis of lethal mutant R293A of yeast ribonucleotide reductase
rcsb
source organism Saccharomyces cerevisiae s288c
total genus 242
structure length 659
sequence length 667
ec nomenclature ec 1.17.4.1: Ribonucleoside-diphosphate reductase.
pdb deposition date 2011-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
A PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
A PF03477 ATP-cone ATP cone domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.70.20 Alpha Beta Alpha-Beta Barrel Anaerobic Ribonucleotide-triphosphate Reductase Large Chain Anaerobic Ribonucleotide-triphosphate Reductase Large Chain 3s8bA00
2WGHA 2XAZA 5CNUA 3O0NA 4MTJA 1XJMA 1XJKA 2XO5A 2XAKA 1QHMA 1XJFA 2Y8NA 2F3OA 1HK8A 2ZLFA 2XO4A 3S8CA 3HNEA 3O0QA 4R1RA 1R1RA 2CVWA 1R9DA 3HNFA 1MZOA 1XJEA 1ZZDA 1RLRA 1PEOA 1H17A 3R1RA 2CVTA 1H79A 2XAVA 4X3VA 4ERMA 2PFLA 1ZYZA 2CVVA 3S8AA 2ZLGA 2XAXA 1H18A 1H7BA 5CNVA 5R1RA 2CVXA 2CVSA 2HA9A 1XJNA 1H78A 3K8TA 5CNSA 1PEUA 2XAYA 3TBAA 3O0OA 3S87A 1XJJA 2XAPA 3HNDA 1CM5A 1PEQA 3HNCA 1R8WA 1H7AA 3S8BA 2EUDA 2YAJA 1PEMA 5CNTA 2XAWA 6R1RA 2R1RA 7R1RA 1XJGA 2CVYA 2BQ1E 1L1LA 2X0XA 3PFLA 3RSRA 2CVUA 3TB9A 1H16A
chains in the Genus database with same CATH superfamily
2WGHA 2XAZA 5CNUA 3O0NA 4MTJA 1XJMA 1XJKA 2XO5A 2XAKA 1QHMA 1XJFA 2Y8NA 2F3OA 1HK8A 2ZLFA 2XO4A 3S8CA 3HNEA 3O0QA 4R1RA 1R1RA 2CVWA 1R9DA 5A0UA 5FAYA 3HNFA 1MZOA 1XJEA 1ZZDA 1RLRA 1PEOA 1H17A 3R1RA 2CVTA 1H79A 2XAVA 4X3VA 4ERMA 2PFLA 1ZYZA 2CVVA 3S8AA 2ZLGA 2XAXA 1H18A 1H7BA 5CNVA 5R1RA 2CVXA 2CVSA 2HA9A 5A0ZA 1XJNA 5FAUA 1H78A 5KDPA 3K8TA 5CNSA 1PEUA 2XAYA 3TBAA 3O0OA 5FAVA 3S87A 1XJJA 2XAPA 3HNDA 1CM5A 1PEQA 3HNCA 1R8WA 1H7AA 3S8BA 2EUDA 2YAJA 1PEMA 5CNTA 2XAWA 6R1RA 2R1RA 7R1RA 1XJGA 5FAWA 2CVYA 2BQ1E 1L1LA 2X0XA 3PFLA 3RSRA 2CVUA 3TB9A 1H16A
chains in the Genus database with same CATH topology
2WGHA 2XAZA 5CNUA 3O0NA 4MTJA 1XJMA 1XJKA 2XO5A 2XAKA 1QHMA 1XJFA 2Y8NA 2F3OA 1HK8A 2ZLFA 2XO4A 3S8CA 3HNEA 3O0QA 4R1RA 1R1RA 2CVWA 1R9DA 5A0UA 5FAYA 3HNFA 1MZOA 1XJEA 1ZZDA 1RLRA 1PEOA 1H17A 3R1RA 2CVTA 1H79A 2XAVA 4X3VA 4ERMA 2PFLA 1ZYZA 2CVVA 3S8AA 2ZLGA 2XAXA 1H18A 1H7BA 5CNVA 5R1RA 2CVXA 2CVSA 2HA9A 5A0ZA 1XJNA 5FAUA 1H78A 5KDPA 3K8TA 5CNSA 1PEUA 2XAYA 3TBAA 3O0OA 5FAVA 3S87A 1XJJA 2XAPA 3HNDA 1CM5A 1PEQA 3HNCA 1R8WA 1H7AA 3S8BA 2EUDA 2YAJA 1PEMA 5CNTA 2XAWA 6R1RA 2R1RA 7R1RA 1XJGA 5FAWA 2CVYA 2BQ1E 1L1LA 2X0XA 3PFLA 3RSRA 2CVUA 3TB9A 1H16A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WGH A;  2XAZ A;  5CNU A;  3O0N A;  4MTJ A;  1XJM A;  1XJK A;  2XO5 A;  2XAK A;  1QHM A;  1XJF A;  2Y8N A;  2F3O A;  1HK8 A;  2ZLF A;  2XO4 A;  3S8C A;  3HNE A;  3O0Q A;  4R1R A;  1R1R A;  2CVW A;  1R9D A;  3HNF A;  1MZO A;  1XJE A;  1ZZD A;  1RLR A;  1PEO A;  1H17 A;  3R1R A;  2CVT A;  1H79 A;  2XAV A;  4X3V A;  4ERM A;  2PFL A;  1ZYZ A;  2CVV A;  3S8A A;  2ZLG A;  2XAX A;  1H18 A;  1H7B A;  5CNV A;  5R1R A;  2CVX A;  2CVS A;  2HA9 A;  1XJN A;  1H78 A;  3K8T A;  5CNS A;  1PEU A;  2XAY A;  3TBA A;  3O0O A;  3S87 A;  1XJJ A;  2XAP A;  3HND A;  1CM5 A;  1PEQ A;  3HNC A;  1R8W A;  1H7A A;  3S8B A;  2EUD A;  2YAJ A;  1PEM A;  5CNT A;  2XAW A;  6R1R A;  2R1R A;  7R1R A;  1XJG A;  2CVY A;  2BQ1 E;  1L1L A;  2X0X A;  3PFL A;  3RSR A;  2CVU A;  3TB9 A;  1H16 A; 
#chains in the Genus database with same CATH topology
 2WGH A;  2XAZ A;  5CNU A;  3O0N A;  4MTJ A;  1XJM A;  1XJK A;  2XO5 A;  2XAK A;  1QHM A;  1XJF A;  2Y8N A;  2F3O A;  1HK8 A;  2ZLF A;  2XO4 A;  3S8C A;  3HNE A;  3O0Q A;  4R1R A;  1R1R A;  2CVW A;  1R9D A;  5A0U A;  5FAY A;  3HNF A;  1MZO A;  1XJE A;  1ZZD A;  1RLR A;  1PEO A;  1H17 A;  3R1R A;  2CVT A;  1H79 A;  2XAV A;  4X3V A;  4ERM A;  2PFL A;  1ZYZ A;  2CVV A;  3S8A A;  2ZLG A;  2XAX A;  1H18 A;  1H7B A;  5CNV A;  5R1R A;  2CVX A;  2CVS A;  2HA9 A;  5A0Z A;  1XJN A;  5FAU A;  1H78 A;  5KDP A;  3K8T A;  5CNS A;  1PEU A;  2XAY A;  3TBA A;  3O0O A;  5FAV A;  3S87 A;  1XJJ A;  2XAP A;  3HND A;  1CM5 A;  1PEQ A;  3HNC A;  1R8W A;  1H7A A;  3S8B A;  2EUD A;  2YAJ A;  1PEM A;  5CNT A;  2XAW A;  6R1R A;  2R1R A;  7R1R A;  1XJG A;  5FAW A;  2CVY A;  2BQ1 E;  1L1L A;  2X0X A;  3PFL A;  3RSR A;  2CVU A;  3TB9 A;  1H16 A; 
#chains in the Genus database with same CATH homology
 2WGH A;  2XAZ A;  5CNU A;  3O0N A;  4MTJ A;  1XJM A;  1XJK A;  2XO5 A;  2XAK A;  1QHM A;  1XJF A;  2Y8N A;  2F3O A;  1HK8 A;  2ZLF A;  2XO4 A;  3S8C A;  3HNE A;  3O0Q A;  4R1R A;  1R1R A;  2CVW A;  1R9D A;  5A0U A;  5FAY A;  3HNF A;  1MZO A;  1XJE A;  1ZZD A;  1RLR A;  1PEO A;  1H17 A;  3R1R A;  2CVT A;  1H79 A;  2XAV A;  4X3V A;  4ERM A;  2PFL A;  1ZYZ A;  2CVV A;  3S8A A;  2ZLG A;  2XAX A;  1H18 A;  1H7B A;  5CNV A;  5R1R A;  2CVX A;  2CVS A;  2HA9 A;  5A0Z A;  1XJN A;  5FAU A;  1H78 A;  5KDP A;  3K8T A;  5CNS A;  1PEU A;  2XAY A;  3TBA A;  3O0O A;  5FAV A;  3S87 A;  1XJJ A;  2XAP A;  3HND A;  1CM5 A;  1PEQ A;  3HNC A;  1R8W A;  1H7A A;  3S8B A;  2EUD A;  2YAJ A;  1PEM A;  5CNT A;  2XAW A;  6R1R A;  2R1R A;  7R1R A;  1XJG A;  5FAW A;  2CVY A;  2BQ1 E;  1L1L A;  2X0X A;  3PFL A;  3RSR A;  2CVU A;  3TB9 A;  1H16 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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