3S9XA

High resolution crystal structure of asch domain from lactobacillus crispatus jv v101
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
159
structure length
159
Chain Sequence
LYFQGMEERSQLFLEQYLSSVSREVSEKYTSFSADYFCADEYNANVCADLILRGEKRASCSLEYWYSQKGELMPQVGHLQVVTNWDGKPICIIEITSVSKCQYNQVSEDFAASEGEGDKSLAWWQEAHRNFFSRECHELGIEFREDMLLVLEHFKVVYH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
molecule keywords ASCH domain
publication title High resolution crystal structure of ASCH domain from Lactobacillus crispatus JV V101
rcsb
source organism Vibrio cholerae tma 21
total genus 50
structure length 159
sequence length 159
ec nomenclature
pdb deposition date 2011-06-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.400.10 Alpha Beta Roll Sulfate adenylyltransferase Sulfate adenylyltransferase 3s9xA00
2QJFA 1M8PA 1J70A 1JHDA 1G8GA 3S9XA 4MAFA 2GKSA 1G8HA 1X6VA 1JEEA 1JEDA 1G8FA 1XJQA 4DNXA 1XNJA 1T62A 1V47A 1JECA 1I2DA 1R6XA 3CR8A
chains in the Genus database with same CATH superfamily
2QJFA 1M8PA 1J70A 1JHDA 1G8GA 3S9XA 4MAFA 2GKSA 1G8HA 1X6VA 1JEEA 1JEDA 1G8FA 1XJQA 4DNXA 1XNJA 1T62A 1V47A 1JECA 1I2DA 1R6XA 3CR8A
chains in the Genus database with same CATH topology
2QJFA 1M8PA 1J70A 1JHDA 1G8GA 3S9XA 4MAFA 2GKSA 1G8HA 1X6VA 1JEEA 1JEDA 1G8FA 1XJQA 4DNXA 1XNJA 1T62A 1V47A 1JECA 1I2DA 1R6XA 3CR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJF A;  1M8P A;  1J70 A;  1JHD A;  1G8G A;  3S9X A;  4MAF A;  2GKS A;  1G8H A;  1X6V A;  1JEE A;  1JED A;  1G8F A;  1XJQ A;  4DNX A;  1XNJ A;  1T62 A;  1V47 A;  1JEC A;  1I2D A;  1R6X A;  3CR8 A; 
#chains in the Genus database with same CATH topology
 2QJF A;  1M8P A;  1J70 A;  1JHD A;  1G8G A;  3S9X A;  4MAF A;  2GKS A;  1G8H A;  1X6V A;  1JEE A;  1JED A;  1G8F A;  1XJQ A;  4DNX A;  1XNJ A;  1T62 A;  1V47 A;  1JEC A;  1I2D A;  1R6X A;  3CR8 A; 
#chains in the Genus database with same CATH homology
 2QJF A;  1M8P A;  1J70 A;  1JHD A;  1G8G A;  3S9X A;  4MAF A;  2GKS A;  1G8H A;  1X6V A;  1JEE A;  1JED A;  1G8F A;  1XJQ A;  4DNX A;  1XNJ A;  1T62 A;  1V47 A;  1JEC A;  1I2D A;  1R6X A;  3CR8 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...