3SH1A

Ac-achbp ligand binding domain mutated to human alpha-7 nachr
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
214
structure length
214
Chain Sequence
DDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords Soluble acetylcholine receptor
publication title Creating an alpha-7 nicotinic acetylcholine recognition domain from the acetylcholine binding protein: crystallographic and ligand selectivity analyses
pubmed doi rcsb
source organism Aplysia californica
total genus 50
structure length 214
sequence length 214
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2011-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3sh1A00
4ZZBA 3P4WA 4ZR6A 3UUBA 2YMEA 4TWFA 2BJ0A 2X00D 4UM3A 4HFDA 3T4MA 5J5FA 5LG3A 4ILCA 5HCJA 4HFEA 4HFCA 4ILAA 4IL4A 4ZK4A 3WTIA 1UW6A 2BG9E 4DBMA 3C84A 2BYQA 2Y7YA 3WTKA 2XNTA 5AFMB 3ZKRA 3U8NA 3EHZA 5AFLA 2Y56A 3WTMA 2YMDA 4UM1A 2XYTA 4XHEA 4LMLA 5TVCA 3RHWA 4TWHA 3SIOA 3UU8A 4QAAA 4TWDA 2BYNA 3U8MA 4LMJA 5HEJA 3PEOA 3UU4A 4BFQA 2XQ3A 2BR7A 4IREA 2BR8A 2WNCA 5AFMA 1UX2A 5BRXA 3GUAA 5HEHA 3TLUA 4QABA 4A97A 4FRRA 3RI5A 4ILBA 2YN6A 2XZ6A 5FJVA 2BG9B 3UU5A 3WTJA 2C9TA 2YOEA 3ZDGA 2WNLA 2XQ9A 2Y54A 2XNVA 4HQPA 4QH5A 4UXUA 3P50A 2PGZA 4EZ1A 5BW2A 5CFBA 3ZDHA 5L4EA 4WV9A 3EAMA 2XQ6A 3WIPA 2X00A 3TLTA 4AFGA 2XYSA 3SH1A 4ZK1A 5HEGA 4HFHA 5J5HA 4UM3S 4ZRUA 2UZ6A 4AFHA 4COFA 4B5DA 5AFJA 5AFNA 2VL0A 2XQAA 2WNJA 5J5GA 2Y58A 2W8GA 5J0ZA 5KZUA 2BG9C 3U8LA 3RQUA 4TNWA 3RIAA 4XK9A 4Z90A 2XQ5A 4QACA 5L47A 4HFIA 2PH9A 5HEUA 3WTHA 4AFTA 3C79A 3PMZA 4PIRA 4ZZCA 3WTOA 2W8FA 5L4HA 3TLWA 5HEOA 5KE4A 2Y57A 3TLVA 4QH1A 3UU6A 4IL9A 3U8KA 2BYSA 4F8HA 4QH4A 4NZBA 5AINA 4D01A 2XQ7A 5SYOA 2BYPA 3RQWA 4LMKA 4BQTA 5BP0A 3JADA 4NPPA 2BG9A 2WN9A 3EI0A 3JAEA 4X5TA 3TLSA 3LSVA 3U8JA 3WTLA 4ZJTA 5AFHA 4A98A 5AFKA 5LXBA 2XQ8A 2ZJVA 4Z91A 3WTNA 4HFBA 2YKSA 2XNUA 3RIFA 5J5IA 5JMEA 3UQ7A 1I9BA 4ALXA 3IGQA 2WZYA 1UV6A 3SQ6A 3UQ4A 5IUXA 2QC1B 2ZJUA 2BYRA 2XQ4A 4TNVA 3JAFA 2XZ5A 3SQ9A 4UY2A 3UU3A 4ZJSA 5CO5A 4UM3P 5HCMA
chains in the Genus database with same CATH superfamily
4ZZBA 3P4WA 4ZR6A 3UUBA 2YMEA 4TWFA 2BJ0A 2X00D 4UM3A 4HFDA 3T4MA 5J5FA 5LG3A 4ILCA 5HCJA 4HFEA 4HFCA 4ILAA 4IL4A 4ZK4A 3WTIA 1UW6A 2BG9E 4DBMA 3C84A 2BYQA 2Y7YA 3WTKA 2XNTA 5AFMB 3ZKRA 3U8NA 3EHZA 5AFLA 2Y56A 3WTMA 2YMDA 4UM1A 2XYTA 4XHEA 4LMLA 5TVCA 3RHWA 4TWHA 3SIOA 3UU8A 4QAAA 4TWDA 2BYNA 3U8MA 4LMJA 5HEJA 3PEOA 3UU4A 4BFQA 2XQ3A 2BR7A 4IREA 2BR8A 2WNCA 5AFMA 1UX2A 5BRXA 3GUAA 5HEHA 3TLUA 4QABA 4A97A 4FRRA 3RI5A 4ILBA 2YN6A 2XZ6A 5FJVA 2BG9B 3UU5A 3WTJA 2C9TA 2YOEA 3ZDGA 2WNLA 2XQ9A 2Y54A 2XNVA 4HQPA 4QH5A 4UXUA 3P50A 2PGZA 4EZ1A 5BW2A 5CFBA 3ZDHA 5L4EA 4WV9A 3EAMA 2XQ6A 3WIPA 2X00A 3TLTA 4AFGA 2XYSA 3SH1A 4ZK1A 5HEGA 4HFHA 5J5HA 4UM3S 4ZRUA 2UZ6A 4AFHA 4COFA 4B5DA 5AFJA 5AFNA 2VL0A 2XQAA 2WNJA 5J5GA 2Y58A 2W8GA 5J0ZA 5KZUA 2BG9C 3U8LA 3RQUA 4TNWA 3RIAA 4XK9A 4Z90A 2XQ5A 4QACA 5L47A 4HFIA 2PH9A 5HEUA 3WTHA 4AFTA 3C79A 3PMZA 4PIRA 4ZZCA 3WTOA 2W8FA 5L4HA 3TLWA 5HEOA 5KE4A 2Y57A 3TLVA 4QH1A 3UU6A 4IL9A 3U8KA 2BYSA 4F8HA 4QH4A 4NZBA 5AINA 4D01A 2XQ7A 5SYOA 2BYPA 3RQWA 4LMKA 4BQTA 5BP0A 3JADA 4NPPA 2BG9A 2WN9A 3EI0A 3JAEA 4X5TA 3TLSA 3LSVA 3U8JA 3WTLA 4ZJTA 5AFHA 4A98A 5AFKA 5LXBA 2XQ8A 2ZJVA 4Z91A 3WTNA 4HFBA 2YKSA 2XNUA 3RIFA 5J5IA 5JMEA 3UQ7A 1I9BA 4ALXA 3IGQA 2WZYA 1UV6A 3SQ6A 3UQ4A 5IUXA 2QC1B 2ZJUA 2BYRA 2XQ4A 4TNVA 3JAFA 2XZ5A 3SQ9A 4UY2A 3UU3A 4ZJSA 5CO5A 4UM3P 5HCMA
chains in the Genus database with same CATH topology
4ZZBA 3P4WA 4ZR6A 3UUBA 2YMEA 4TWFA 2BJ0A 2X00D 4UM3A 4HFDA 3T4MA 5J5FA 5LG3A 4ILCA 5HCJA 4HFEA 4HFCA 4ILAA 4IL4A 4ZK4A 3WTIA 1UW6A 2BG9E 4DBMA 3C84A 2BYQA 2Y7YA 3WTKA 2XNTA 5AFMB 3ZKRA 3U8NA 3EHZA 5AFLA 2Y56A 3WTMA 2YMDA 4UM1A 2XYTA 4XHEA 4LMLA 5TVCA 3RHWA 4TWHA 3SIOA 3UU8A 4QAAA 4TWDA 2BYNA 3U8MA 4LMJA 5HEJA 3PEOA 3UU4A 4BFQA 2XQ3A 2BR7A 4IREA 2BR8A 2WNCA 5AFMA 1UX2A 5BRXA 3GUAA 5HEHA 3TLUA 4QABA 4A97A 4FRRA 3RI5A 4ILBA 2YN6A 2XZ6A 5FJVA 2BG9B 3UU5A 3WTJA 2C9TA 2YOEA 3ZDGA 2WNLA 2XQ9A 2Y54A 2XNVA 4HQPA 4QH5A 4UXUA 3P50A 2PGZA 4EZ1A 5BW2A 5CFBA 3ZDHA 5L4EA 4WV9A 3EAMA 2XQ6A 3WIPA 2X00A 3TLTA 4AFGA 2XYSA 3SH1A 4ZK1A 5HEGA 4HFHA 5J5HA 4UM3S 4ZRUA 2UZ6A 4AFHA 4COFA 4B5DA 5AFJA 5AFNA 2VL0A 2XQAA 2WNJA 5J5GA 2Y58A 2W8GA 5J0ZA 5KZUA 2BG9C 3U8LA 3RQUA 4TNWA 3RIAA 4XK9A 4Z90A 2XQ5A 4QACA 5L47A 4HFIA 2PH9A 5HEUA 3WTHA 4AFTA 3C79A 3PMZA 4PIRA 4ZZCA 3WTOA 2W8FA 5L4HA 3TLWA 5HEOA 5KE4A 2Y57A 3TLVA 4QH1A 3UU6A 4IL9A 3U8KA 2BYSA 4F8HA 4QH4A 4NZBA 5AINA 4D01A 2XQ7A 5SYOA 2BYPA 3RQWA 4LMKA 4BQTA 5BP0A 3JADA 4NPPA 2BG9A 2WN9A 3EI0A 3JAEA 4X5TA 3TLSA 3LSVA 3U8JA 3WTLA 4ZJTA 5AFHA 4A98A 5AFKA 5LXBA 2XQ8A 2ZJVA 4Z91A 3WTNA 4HFBA 2YKSA 2XNUA 3RIFA 5J5IA 5JMEA 3UQ7A 1I9BA 4ALXA 3IGQA 2WZYA 1UV6A 3SQ6A 3UQ4A 5IUXA 2QC1B 2ZJUA 2BYRA 2XQ4A 4TNVA 3JAFA 2XZ5A 3SQ9A 4UY2A 3UU3A 4ZJSA 5CO5A 4UM3P 5HCMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZZB A;  3P4W A;  4ZR6 A;  3UUB A;  2YME A;  4TWF A;  2BJ0 A;  2X00 D;  4UM3 A;  4HFD A;  3T4M A;  5J5F A;  5LG3 A;  4ILC A;  5HCJ A;  4HFE A;  4HFC A;  4ILA A;  4IL4 A;  4ZK4 A;  3WTI A;  1UW6 A;  2BG9 E;  4DBM A;  3C84 A;  2BYQ A;  2Y7Y A;  3WTK A;  2XNT A;  5AFM B;  3ZKR A;  3U8N A;  3EHZ A;  5AFL A;  2Y56 A;  3WTM A;  2YMD A;  4UM1 A;  2XYT A;  4XHE A;  4LML A;  5TVC A;  3RHW A;  4TWH A;  3SIO A;  3UU8 A;  4QAA A;  4TWD A;  2BYN A;  3U8M A;  4LMJ A;  5HEJ A;  3PEO A;  3UU4 A;  4BFQ A;  2XQ3 A;  2BR7 A;  4IRE A;  2BR8 A;  2WNC A;  5AFM A;  1UX2 A;  5BRX A;  3GUA A;  5HEH A;  3TLU A;  4QAB A;  4A97 A;  4FRR A;  3RI5 A;  4ILB A;  2YN6 A;  2XZ6 A;  5FJV A;  2BG9 B;  3UU5 A;  3WTJ A;  2C9T A;  2YOE A;  3ZDG A;  2WNL A;  2XQ9 A;  2Y54 A;  2XNV A;  4HQP A;  4QH5 A;  4UXU A;  3P50 A;  2PGZ A;  4EZ1 A;  5BW2 A;  5CFB A;  3ZDH A;  5L4E A;  4WV9 A;  3EAM A;  2XQ6 A;  3WIP A;  2X00 A;  3TLT A;  4AFG A;  2XYS A;  3SH1 A;  4ZK1 A;  5HEG A;  4HFH A;  5J5H A;  4UM3 S;  4ZRU A;  2UZ6 A;  4AFH A;  4COF A;  4B5D A;  5AFJ A;  5AFN A;  2VL0 A;  2XQA A;  2WNJ A;  5J5G A;  2Y58 A;  2W8G A;  5J0Z A;  5KZU A;  2BG9 C;  3U8L A;  3RQU A;  4TNW A;  3RIA A;  4XK9 A;  4Z90 A;  2XQ5 A;  4QAC A;  5L47 A;  4HFI A;  2PH9 A;  5HEU A;  3WTH A;  4AFT A;  3C79 A;  3PMZ A;  4PIR A;  4ZZC A;  3WTO A;  2W8F A;  5L4H A;  3TLW A;  5HEO A;  5KE4 A;  2Y57 A;  3TLV A;  4QH1 A;  3UU6 A;  4IL9 A;  3U8K A;  2BYS A;  4F8H A;  4QH4 A;  4NZB A;  5AIN A;  4D01 A;  2XQ7 A;  5SYO A;  2BYP A;  3RQW A;  4LMK A;  4BQT A;  5BP0 A;  3JAD A;  4NPP A;  2BG9 A;  2WN9 A;  3EI0 A;  3JAE A;  4X5T A;  3TLS A;  3LSV A;  3U8J A;  3WTL A;  4ZJT A;  5AFH A;  4A98 A;  5AFK A;  5LXB A;  2XQ8 A;  2ZJV A;  4Z91 A;  3WTN A;  4HFB A;  2YKS A;  2XNU A;  3RIF A;  5J5I A;  5JME A;  3UQ7 A;  1I9B A;  4ALX A;  3IGQ A;  2WZY A;  1UV6 A;  3SQ6 A;  3UQ4 A;  5IUX A;  2QC1 B;  2ZJU A;  2BYR A;  2XQ4 A;  4TNV A;  3JAF A;  2XZ5 A;  3SQ9 A;  4UY2 A;  3UU3 A;  4ZJS A;  5CO5 A;  4UM3 P;  5HCM A; 
#chains in the Genus database with same CATH topology
 4ZZB A;  3P4W A;  4ZR6 A;  3UUB A;  2YME A;  4TWF A;  2BJ0 A;  2X00 D;  4UM3 A;  4HFD A;  3T4M A;  5J5F A;  5LG3 A;  4ILC A;  5HCJ A;  4HFE A;  4HFC A;  4ILA A;  4IL4 A;  4ZK4 A;  3WTI A;  1UW6 A;  2BG9 E;  4DBM A;  3C84 A;  2BYQ A;  2Y7Y A;  3WTK A;  2XNT A;  5AFM B;  3ZKR A;  3U8N A;  3EHZ A;  5AFL A;  2Y56 A;  3WTM A;  2YMD A;  4UM1 A;  2XYT A;  4XHE A;  4LML A;  5TVC A;  3RHW A;  4TWH A;  3SIO A;  3UU8 A;  4QAA A;  4TWD A;  2BYN A;  3U8M A;  4LMJ A;  5HEJ A;  3PEO A;  3UU4 A;  4BFQ A;  2XQ3 A;  2BR7 A;  4IRE A;  2BR8 A;  2WNC A;  5AFM A;  1UX2 A;  5BRX A;  3GUA A;  5HEH A;  3TLU A;  4QAB A;  4A97 A;  4FRR A;  3RI5 A;  4ILB A;  2YN6 A;  2XZ6 A;  5FJV A;  2BG9 B;  3UU5 A;  3WTJ A;  2C9T A;  2YOE A;  3ZDG A;  2WNL A;  2XQ9 A;  2Y54 A;  2XNV A;  4HQP A;  4QH5 A;  4UXU A;  3P50 A;  2PGZ A;  4EZ1 A;  5BW2 A;  5CFB A;  3ZDH A;  5L4E A;  4WV9 A;  3EAM A;  2XQ6 A;  3WIP A;  2X00 A;  3TLT A;  4AFG A;  2XYS A;  3SH1 A;  4ZK1 A;  5HEG A;  4HFH A;  5J5H A;  4UM3 S;  4ZRU A;  2UZ6 A;  4AFH A;  4COF A;  4B5D A;  5AFJ A;  5AFN A;  2VL0 A;  2XQA A;  2WNJ A;  5J5G A;  2Y58 A;  2W8G A;  5J0Z A;  5KZU A;  2BG9 C;  3U8L A;  3RQU A;  4TNW A;  3RIA A;  4XK9 A;  4Z90 A;  2XQ5 A;  4QAC A;  5L47 A;  4HFI A;  2PH9 A;  5HEU A;  3WTH A;  4AFT A;  3C79 A;  3PMZ A;  4PIR A;  4ZZC A;  3WTO A;  2W8F A;  5L4H A;  3TLW A;  5HEO A;  5KE4 A;  2Y57 A;  3TLV A;  4QH1 A;  3UU6 A;  4IL9 A;  3U8K A;  2BYS A;  4F8H A;  4QH4 A;  4NZB A;  5AIN A;  4D01 A;  2XQ7 A;  5SYO A;  2BYP A;  3RQW A;  4LMK A;  4BQT A;  5BP0 A;  3JAD A;  4NPP A;  2BG9 A;  2WN9 A;  3EI0 A;  3JAE A;  4X5T A;  3TLS A;  3LSV A;  3U8J A;  3WTL A;  4ZJT A;  5AFH A;  4A98 A;  5AFK A;  5LXB A;  2XQ8 A;  2ZJV A;  4Z91 A;  3WTN A;  4HFB A;  2YKS A;  2XNU A;  3RIF A;  5J5I A;  5JME A;  3UQ7 A;  1I9B A;  4ALX A;  3IGQ A;  2WZY A;  1UV6 A;  3SQ6 A;  3UQ4 A;  5IUX A;  2QC1 B;  2ZJU A;  2BYR A;  2XQ4 A;  4TNV A;  3JAF A;  2XZ5 A;  3SQ9 A;  4UY2 A;  3UU3 A;  4ZJS A;  5CO5 A;  4UM3 P;  5HCM A; 
#chains in the Genus database with same CATH homology
 4ZZB A;  3P4W A;  4ZR6 A;  3UUB A;  2YME A;  4TWF A;  2BJ0 A;  2X00 D;  4UM3 A;  4HFD A;  3T4M A;  5J5F A;  5LG3 A;  4ILC A;  5HCJ A;  4HFE A;  4HFC A;  4ILA A;  4IL4 A;  4ZK4 A;  3WTI A;  1UW6 A;  2BG9 E;  4DBM A;  3C84 A;  2BYQ A;  2Y7Y A;  3WTK A;  2XNT A;  5AFM B;  3ZKR A;  3U8N A;  3EHZ A;  5AFL A;  2Y56 A;  3WTM A;  2YMD A;  4UM1 A;  2XYT A;  4XHE A;  4LML A;  5TVC A;  3RHW A;  4TWH A;  3SIO A;  3UU8 A;  4QAA A;  4TWD A;  2BYN A;  3U8M A;  4LMJ A;  5HEJ A;  3PEO A;  3UU4 A;  4BFQ A;  2XQ3 A;  2BR7 A;  4IRE A;  2BR8 A;  2WNC A;  5AFM A;  1UX2 A;  5BRX A;  3GUA A;  5HEH A;  3TLU A;  4QAB A;  4A97 A;  4FRR A;  3RI5 A;  4ILB A;  2YN6 A;  2XZ6 A;  5FJV A;  2BG9 B;  3UU5 A;  3WTJ A;  2C9T A;  2YOE A;  3ZDG A;  2WNL A;  2XQ9 A;  2Y54 A;  2XNV A;  4HQP A;  4QH5 A;  4UXU A;  3P50 A;  2PGZ A;  4EZ1 A;  5BW2 A;  5CFB A;  3ZDH A;  5L4E A;  4WV9 A;  3EAM A;  2XQ6 A;  3WIP A;  2X00 A;  3TLT A;  4AFG A;  2XYS A;  3SH1 A;  4ZK1 A;  5HEG A;  4HFH A;  5J5H A;  4UM3 S;  4ZRU A;  2UZ6 A;  4AFH A;  4COF A;  4B5D A;  5AFJ A;  5AFN A;  2VL0 A;  2XQA A;  2WNJ A;  5J5G A;  2Y58 A;  2W8G A;  5J0Z A;  5KZU A;  2BG9 C;  3U8L A;  3RQU A;  4TNW A;  3RIA A;  4XK9 A;  4Z90 A;  2XQ5 A;  4QAC A;  5L47 A;  4HFI A;  2PH9 A;  5HEU A;  3WTH A;  4AFT A;  3C79 A;  3PMZ A;  4PIR A;  4ZZC A;  3WTO A;  2W8F A;  5L4H A;  3TLW A;  5HEO A;  5KE4 A;  2Y57 A;  3TLV A;  4QH1 A;  3UU6 A;  4IL9 A;  3U8K A;  2BYS A;  4F8H A;  4QH4 A;  4NZB A;  5AIN A;  4D01 A;  2XQ7 A;  5SYO A;  2BYP A;  3RQW A;  4LMK A;  4BQT A;  5BP0 A;  3JAD A;  4NPP A;  2BG9 A;  2WN9 A;  3EI0 A;  3JAE A;  4X5T A;  3TLS A;  3LSV A;  3U8J A;  3WTL A;  4ZJT A;  5AFH A;  4A98 A;  5AFK A;  5LXB A;  2XQ8 A;  2ZJV A;  4Z91 A;  3WTN A;  4HFB A;  2YKS A;  2XNU A;  3RIF A;  5J5I A;  5JME A;  3UQ7 A;  1I9B A;  4ALX A;  3IGQ A;  2WZY A;  1UV6 A;  3SQ6 A;  3UQ4 A;  5IUX A;  2QC1 B;  2ZJU A;  2BYR A;  2XQ4 A;  4TNV A;  3JAF A;  2XZ5 A;  3SQ9 A;  4UY2 A;  3UU3 A;  4ZJS A;  5CO5 A;  4UM3 P;  5HCM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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