3SMBA

Phenethylisothiocyanate covalently bound to macrophage migration inhibitory factor (mif)
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
114
structure length
114
Chain Sequence
PMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/isomerase inhibitor
molecule keywords Macrophage migration inhibitory factor
publication title Structural interactions dictate the kinetics of macrophage migration inhibitory factor inhibition by different cancer-preventive isothiocyanates.
pubmed doi rcsb
source organism Homo sapiens
total genus 34
structure length 114
sequence length 114
chains with identical sequence B, C
ec nomenclature ec 5.3.2.1: Phenylpyruvate tautomerase.
pdb deposition date 2011-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01187 MIF Macrophage migration inhibitory factor (MIF)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.429.10 Alpha Beta 2-Layer Sandwich Macrophage Migration Inhibitory Factor Macrophage Migration Inhibitory Factor 3smbA00
4GRPA 4WR8A 3WNRA 3RF4A 3FWUA 2OPAA 4Z15A 4EVGA 3SMBA 3HOFA 3L5SA 2OS5A 3MB2A 3L5TA 4TRUA 4P7MA 3B64A 2OOHA 3L5UA 5BSCA 1LJTA 3EJ3A 1S0YB 3E6QA 4GRRA 1GCZA 4DH4A 3C6VA 3KANA 3IJJA 4JJ9A 4Q3FA 3MF7A 2OOZA 4GUMA 2AALA 2WKFA 3B9SA 1P1GA 1GIFA 2WKBA 3M20A 4X19A 2FLTA 1GYXA 4PKZA 4ETGA 3EJ9A 3L5RA 3MJZA 4F2KA 3N4GA 3WNTA 3EJ7A 3FWTA 4OSFA 3GACA 2OOWA 3IJGA 2ORMA 4P0HA 4GROA 4JCUA 5BSJA 1HFOA 4U5RA 3DJIA 4LHOA 3RY0A 4OTAA 3RF5A 4GRQA 1S0YA 1MFFA 5BSIA 3L5PA 4LHPA 4FDXA 4XX8A 3JTUA 1FIMA 4EUIA 4OYQA 3M21A 3N4HA 3SMCA 4Z1TA 4NWQB 2AAGA 4LKBA 1MWWA 3CE4A 1CGQA 4GRUA 1DPTA 2AAJA 2XCZA 4M1AA 5B4OA 3U18A 5CLOA 1GD0A 3MB2B 3MLCA 4OTCA 1OTFA 3GADA 3KERA 3T5SA 5EIZA 5HVVA 3ABFA 4OTBA 2OP8A 1GYJA 3EJ3B 4XX7A 1MIFA 4U5PA 1GYYA 3N4DA 1UIZA 4WRBA 5J7PA 4PLUA 4FAZA 4GRNA 2X4KA 3MF8A 3JSFA 4P7SA 5CLNA 2WKFB 1BJPA 4P01A 3L5VA 4NWPE 4X1CC 1CA7A 3JSGA 3DJHA 3EJ9B 3WNSA 2GDGA 4PKKA 1MFIA 2FLZA 4X1CA 3EJ7B 4K9GA 4Z1UA 1OTGA 1U9DA 2FM7A 5HVTA 5J7QA 5HVSA 5BS9A 4TRFA
chains in the Genus database with same CATH superfamily
4GRPA 4WR8A 3WNRA 3RF4A 3FWUA 2OPAA 4Z15A 4EVGA 3SMBA 3HOFA 3L5SA 2OS5A 3MB2A 3L5TA 4TRUA 4P7MA 3B64A 2OOHA 3L5UA 5BSCA 1LJTA 3EJ3A 1S0YB 3E6QA 4GRRA 1GCZA 4DH4A 3C6VA 3KANA 3IJJA 4JJ9A 4Q3FA 3MF7A 2OOZA 4GUMA 2AALA 2WKFA 3B9SA 1P1GA 1GIFA 2WKBA 3M20A 4X19A 2FLTA 1GYXA 4PKZA 4ETGA 3EJ9A 3L5RA 3MJZA 4F2KA 3N4GA 3WNTA 3EJ7A 3FWTA 4OSFA 3GACA 2OOWA 3IJGA 2ORMA 4P0HA 4GROA 4JCUA 5BSJA 1HFOA 4U5RA 3DJIA 4LHOA 3RY0A 4OTAA 3RF5A 4GRQA 1S0YA 1MFFA 5BSIA 3L5PA 4LHPA 4FDXA 4XX8A 3JTUA 1FIMA 4EUIA 4OYQA 3M21A 3N4HA 3SMCA 4Z1TA 4NWQB 2AAGA 4LKBA 1MWWA 3CE4A 1CGQA 4GRUA 1DPTA 2AAJA 2XCZA 4M1AA 5B4OA 3U18A 5CLOA 1GD0A 3MB2B 3MLCA 4OTCA 1OTFA 3GADA 3KERA 3T5SA 5EIZA 5HVVA 3ABFA 4OTBA 2OP8A 1GYJA 3EJ3B 4XX7A 1MIFA 4U5PA 1GYYA 3N4DA 1UIZA 4WRBA 5J7PA 4PLUA 4FAZA 4GRNA 2X4KA 3MF8A 3JSFA 4P7SA 5CLNA 2WKFB 1BJPA 4P01A 3L5VA 4NWPE 4X1CC 1CA7A 3JSGA 3DJHA 3EJ9B 3WNSA 2GDGA 4PKKA 1MFIA 2FLZA 4X1CA 3EJ7B 4K9GA 4Z1UA 1OTGA 1U9DA 2FM7A 5HVTA 5J7QA 5HVSA 5BS9A 4TRFA
chains in the Genus database with same CATH topology
4GRPA 4WR8A 3WNRA 3RF4A 3FWUA 2OPAA 4Z15A 4EVGA 3SMBA 3HOFA 3L5SA 2OS5A 3MB2A 3L5TA 4TRUA 4P7MA 3B64A 2OOHA 3L5UA 5BSCA 1LJTA 3EJ3A 1S0YB 3E6QA 4GRRA 1GCZA 4DH4A 3C6VA 3KANA 3IJJA 4JJ9A 4Q3FA 3MF7A 2OOZA 4GUMA 2AALA 2WKFA 3B9SA 1P1GA 1GIFA 2WKBA 3M20A 4X19A 2FLTA 1GYXA 4PKZA 4ETGA 3EJ9A 3L5RA 3MJZA 4F2KA 3N4GA 3WNTA 3EJ7A 3FWTA 4OSFA 3GACA 2OOWA 3IJGA 2ORMA 4P0HA 4GROA 4JCUA 5BSJA 1HFOA 4U5RA 3DJIA 4LHOA 3RY0A 4OTAA 3RF5A 4GRQA 1S0YA 1MFFA 5BSIA 3L5PA 4LHPA 4FDXA 4XX8A 3JTUA 1FIMA 4EUIA 4OYQA 3M21A 3N4HA 3SMCA 4Z1TA 4NWQB 2AAGA 4LKBA 1MWWA 3CE4A 1CGQA 4GRUA 1DPTA 2AAJA 2XCZA 4M1AA 5B4OA 3U18A 5CLOA 1GD0A 3MB2B 3MLCA 4OTCA 1OTFA 3GADA 3KERA 3T5SA 5EIZA 5HVVA 3ABFA 4OTBA 2OP8A 1GYJA 3EJ3B 4XX7A 1MIFA 4U5PA 1GYYA 3N4DA 1UIZA 4WRBA 5J7PA 4PLUA 4FAZA 4GRNA 2X4KA 3MF8A 3JSFA 4P7SA 5CLNA 2WKFB 1BJPA 4P01A 3L5VA 4NWPE 4X1CC 1CA7A 3JSGA 3DJHA 3EJ9B 3WNSA 2GDGA 4PKKA 1MFIA 2FLZA 4X1CA 3EJ7B 4K9GA 4Z1UA 1OTGA 1U9DA 2FM7A 5HVTA 5J7QA 5HVSA 5BS9A 4TRFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GRP A;  4WR8 A;  3WNR A;  3RF4 A;  3FWU A;  2OPA A;  4Z15 A;  4EVG A;  3SMB A;  3HOF A;  3L5S A;  2OS5 A;  3MB2 A;  3L5T A;  4TRU A;  4P7M A;  3B64 A;  2OOH A;  3L5U A;  5BSC A;  1LJT A;  3EJ3 A;  1S0Y B;  3E6Q A;  4GRR A;  1GCZ A;  4DH4 A;  3C6V A;  3KAN A;  3IJJ A;  4JJ9 A;  4Q3F A;  3MF7 A;  2OOZ A;  4GUM A;  2AAL A;  2WKF A;  3B9S A;  1P1G A;  1GIF A;  2WKB A;  3M20 A;  4X19 A;  2FLT A;  1GYX A;  4PKZ A;  4ETG A;  3EJ9 A;  3L5R A;  3MJZ A;  4F2K A;  3N4G A;  3WNT A;  3EJ7 A;  3FWT A;  4OSF A;  3GAC A;  2OOW A;  3IJG A;  2ORM A;  4P0H A;  4GRO A;  4JCU A;  5BSJ A;  1HFO A;  4U5R A;  3DJI A;  4LHO A;  3RY0 A;  4OTA A;  3RF5 A;  4GRQ A;  1S0Y A;  1MFF A;  5BSI A;  3L5P A;  4LHP A;  4FDX A;  4XX8 A;  3JTU A;  1FIM A;  4EUI A;  4OYQ A;  3M21 A;  3N4H A;  3SMC A;  4Z1T A;  4NWQ B;  2AAG A;  4LKB A;  1MWW A;  3CE4 A;  1CGQ A;  4GRU A;  1DPT A;  2AAJ A;  2XCZ A;  4M1A A;  5B4O A;  3U18 A;  5CLO A;  1GD0 A;  3MB2 B;  3MLC A;  4OTC A;  1OTF A;  3GAD A;  3KER A;  3T5S A;  5EIZ A;  5HVV A;  3ABF A;  4OTB A;  2OP8 A;  1GYJ A;  3EJ3 B;  4XX7 A;  1MIF A;  4U5P A;  1GYY A;  3N4D A;  1UIZ A;  4WRB A;  5J7P A;  4PLU A;  4FAZ A;  4GRN A;  2X4K A;  3MF8 A;  3JSF A;  4P7S A;  5CLN A;  2WKF B;  1BJP A;  4P01 A;  3L5V A;  4NWP E;  4X1C C;  1CA7 A;  3JSG A;  3DJH A;  3EJ9 B;  3WNS A;  2GDG A;  4PKK A;  1MFI A;  2FLZ A;  4X1C A;  3EJ7 B;  4K9G A;  4Z1U A;  1OTG A;  1U9D A;  2FM7 A;  5HVT A;  5J7Q A;  5HVS A;  5BS9 A;  4TRF A; 
#chains in the Genus database with same CATH topology
 4GRP A;  4WR8 A;  3WNR A;  3RF4 A;  3FWU A;  2OPA A;  4Z15 A;  4EVG A;  3SMB A;  3HOF A;  3L5S A;  2OS5 A;  3MB2 A;  3L5T A;  4TRU A;  4P7M A;  3B64 A;  2OOH A;  3L5U A;  5BSC A;  1LJT A;  3EJ3 A;  1S0Y B;  3E6Q A;  4GRR A;  1GCZ A;  4DH4 A;  3C6V A;  3KAN A;  3IJJ A;  4JJ9 A;  4Q3F A;  3MF7 A;  2OOZ A;  4GUM A;  2AAL A;  2WKF A;  3B9S A;  1P1G A;  1GIF A;  2WKB A;  3M20 A;  4X19 A;  2FLT A;  1GYX A;  4PKZ A;  4ETG A;  3EJ9 A;  3L5R A;  3MJZ A;  4F2K A;  3N4G A;  3WNT A;  3EJ7 A;  3FWT A;  4OSF A;  3GAC A;  2OOW A;  3IJG A;  2ORM A;  4P0H A;  4GRO A;  4JCU A;  5BSJ A;  1HFO A;  4U5R A;  3DJI A;  4LHO A;  3RY0 A;  4OTA A;  3RF5 A;  4GRQ A;  1S0Y A;  1MFF A;  5BSI A;  3L5P A;  4LHP A;  4FDX A;  4XX8 A;  3JTU A;  1FIM A;  4EUI A;  4OYQ A;  3M21 A;  3N4H A;  3SMC A;  4Z1T A;  4NWQ B;  2AAG A;  4LKB A;  1MWW A;  3CE4 A;  1CGQ A;  4GRU A;  1DPT A;  2AAJ A;  2XCZ A;  4M1A A;  5B4O A;  3U18 A;  5CLO A;  1GD0 A;  3MB2 B;  3MLC A;  4OTC A;  1OTF A;  3GAD A;  3KER A;  3T5S A;  5EIZ A;  5HVV A;  3ABF A;  4OTB A;  2OP8 A;  1GYJ A;  3EJ3 B;  4XX7 A;  1MIF A;  4U5P A;  1GYY A;  3N4D A;  1UIZ A;  4WRB A;  5J7P A;  4PLU A;  4FAZ A;  4GRN A;  2X4K A;  3MF8 A;  3JSF A;  4P7S A;  5CLN A;  2WKF B;  1BJP A;  4P01 A;  3L5V A;  4NWP E;  4X1C C;  1CA7 A;  3JSG A;  3DJH A;  3EJ9 B;  3WNS A;  2GDG A;  4PKK A;  1MFI A;  2FLZ A;  4X1C A;  3EJ7 B;  4K9G A;  4Z1U A;  1OTG A;  1U9D A;  2FM7 A;  5HVT A;  5J7Q A;  5HVS A;  5BS9 A;  4TRF A; 
#chains in the Genus database with same CATH homology
 4GRP A;  4WR8 A;  3WNR A;  3RF4 A;  3FWU A;  2OPA A;  4Z15 A;  4EVG A;  3SMB A;  3HOF A;  3L5S A;  2OS5 A;  3MB2 A;  3L5T A;  4TRU A;  4P7M A;  3B64 A;  2OOH A;  3L5U A;  5BSC A;  1LJT A;  3EJ3 A;  1S0Y B;  3E6Q A;  4GRR A;  1GCZ A;  4DH4 A;  3C6V A;  3KAN A;  3IJJ A;  4JJ9 A;  4Q3F A;  3MF7 A;  2OOZ A;  4GUM A;  2AAL A;  2WKF A;  3B9S A;  1P1G A;  1GIF A;  2WKB A;  3M20 A;  4X19 A;  2FLT A;  1GYX A;  4PKZ A;  4ETG A;  3EJ9 A;  3L5R A;  3MJZ A;  4F2K A;  3N4G A;  3WNT A;  3EJ7 A;  3FWT A;  4OSF A;  3GAC A;  2OOW A;  3IJG A;  2ORM A;  4P0H A;  4GRO A;  4JCU A;  5BSJ A;  1HFO A;  4U5R A;  3DJI A;  4LHO A;  3RY0 A;  4OTA A;  3RF5 A;  4GRQ A;  1S0Y A;  1MFF A;  5BSI A;  3L5P A;  4LHP A;  4FDX A;  4XX8 A;  3JTU A;  1FIM A;  4EUI A;  4OYQ A;  3M21 A;  3N4H A;  3SMC A;  4Z1T A;  4NWQ B;  2AAG A;  4LKB A;  1MWW A;  3CE4 A;  1CGQ A;  4GRU A;  1DPT A;  2AAJ A;  2XCZ A;  4M1A A;  5B4O A;  3U18 A;  5CLO A;  1GD0 A;  3MB2 B;  3MLC A;  4OTC A;  1OTF A;  3GAD A;  3KER A;  3T5S A;  5EIZ A;  5HVV A;  3ABF A;  4OTB A;  2OP8 A;  1GYJ A;  3EJ3 B;  4XX7 A;  1MIF A;  4U5P A;  1GYY A;  3N4D A;  1UIZ A;  4WRB A;  5J7P A;  4PLU A;  4FAZ A;  4GRN A;  2X4K A;  3MF8 A;  3JSF A;  4P7S A;  5CLN A;  2WKF B;  1BJP A;  4P01 A;  3L5V A;  4NWP E;  4X1C C;  1CA7 A;  3JSG A;  3DJH A;  3EJ9 B;  3WNS A;  2GDG A;  4PKK A;  1MFI A;  2FLZ A;  4X1C A;  3EJ7 B;  4K9G A;  4Z1U A;  1OTG A;  1U9D A;  2FM7 A;  5HVT A;  5J7Q A;  5HVS A;  5BS9 A;  4TRF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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