3SN2A

Crystal structure analysis of iron regulatory protein 1 in complex with transferrin receptor ire b rna
Total Genus 226
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
226
sequence length
888
structure length
848
Chain Sequence
SNPFAYLAEPLDPAQPGKKFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDIENILNWNVTQHMNIEVPFKPARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPVDLVIDFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETVNASSDKLYLWNPKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQAPQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPRMHVQVKLDTGKTFQAVIRFDTDVELTYFHNGGILNYMIRKMAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase/rna
molecule keywords Cytoplasmic aconitate hydratase
publication title Accommodating variety in iron-responsive elements: Crystal structure of transferrin receptor 1 B IRE bound to iron regulatory protein 1.
pubmed doi rcsb
source organism Oryctolagus cuniculus
total genus 226
structure length 848
sequence length 888
ec nomenclature ec 4.2.1.3: Aconitate hydratase.
pdb deposition date 2011-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00330 Aconitase Aconitase family (aconitate hydratase)
A PF00694 Aconitase_C Aconitase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.19.10 Alpha Beta Alpha-Beta Barrel Aconitase; domain 4 Aconitase, domain 4 3sn2A03
3.30.499.10 Alpha Beta 2-Layer Sandwich Aconitase; domain 3 Aconitase, domain 3 3sn2A02
3.30.499.20 Alpha Beta 2-Layer Sandwich Aconitase; domain 3 Aconitase; domain 3 3sn2A01
1V7LA 1B0MA 2PKPA 1FGHA 1AMJA 1NISA 5ACNA 1C97A 1C96A 1B0KA 3H5EA 7ACNA 2B3XA 4KP1A 3H5HA 3VBAA 3SN2A 1NITA 3SNPA 8ACNA 3H5JA 1B0JA 6ACNA 1ACOA 3Q3WA 4KP2A 2B3YA 2HCUA 1AMIA 4NQYA 1L5JA
chains in the Genus database with same CATH superfamily
1V7LA 1B0MA 2PKPA 1FGHA 1AMJA 1NISA 5ACNA 1C97A 1C96A 1B0KA 3H5EA 7ACNA 2B3XA 4KP1A 3H5HA 3VBAA 3SN2A 1NITA 3SNPA 8ACNA 3H5JA 1B0JA 6ACNA 1ACOA 3Q3WA 4KP2A 2B3YA 2HCUA 1AMIA 4NQYA 1L5JA
chains in the Genus database with same CATH topology
1V7LA 1B0MA 2PKPA 1FGHA 1AMJA 1NISA 5ACNA 1C97A 1C96A 1B0KA 3H5EA 7ACNA 2B3XA 4KP1A 3H5HA 3VBAA 3SN2A 1NITA 3SNPA 8ACNA 3H5JA 1B0JA 6ACNA 1ACOA 3Q3WA 4KP2A 2B3YA 2HCUA 1AMIA 4NQYA 1L5JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V7L A;  1B0M A;  2PKP A;  1FGH A;  1AMJ A;  1NIS A;  5ACN A;  1C97 A;  1C96 A;  1B0K A;  3H5E A;  7ACN A;  2B3X A;  4KP1 A;  3H5H A;  3VBA A;  3SN2 A;  1NIT A;  3SNP A;  8ACN A;  3H5J A;  1B0J A;  6ACN A;  1ACO A;  3Q3W A;  4KP2 A;  2B3Y A;  2HCU A;  1AMI A;  4NQY A;  1L5J A; 
#chains in the Genus database with same CATH topology
 1V7L A;  1B0M A;  2PKP A;  1FGH A;  1AMJ A;  1NIS A;  5ACN A;  1C97 A;  1C96 A;  1B0K A;  3H5E A;  7ACN A;  2B3X A;  4KP1 A;  3H5H A;  3VBA A;  3SN2 A;  1NIT A;  3SNP A;  8ACN A;  3H5J A;  1B0J A;  6ACN A;  1ACO A;  3Q3W A;  4KP2 A;  2B3Y A;  2HCU A;  1AMI A;  4NQY A;  1L5J A; 
#chains in the Genus database with same CATH homology
 1V7L A;  1B0M A;  2PKP A;  1FGH A;  1AMJ A;  1NIS A;  5ACN A;  1C97 A;  1C96 A;  1B0K A;  3H5E A;  7ACN A;  2B3X A;  4KP1 A;  3H5H A;  3VBA A;  3SN2 A;  1NIT A;  3SNP A;  8ACN A;  3H5J A;  1B0J A;  6ACN A;  1ACO A;  3Q3W A;  4KP2 A;  2B3Y A;  2HCU A;  1AMI A;  4NQY A;  1L5J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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