3STRP

Strep peptide deformylase with a time dependent thiazolidine hydroxamic acid
Total Genus 60
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
202
structure length
193
Chain Sequence
SAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Peptide deformylase 3
publication title Understanding the origins of time-dependent inhibition by polypeptide deformylase inhibitors.
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 60
structure length 193
sequence length 202
ec nomenclature ec 3.5.1.88: Peptide deformylase.
pdb deposition date 2011-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF01327 Pep_deformylase Polypeptide deformylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.45.10 Alpha Beta Alpha-Beta Complex Peptide Deformylase Peptide deformylase 3strP00
5CVKA 1G2AA 2AI7A 5I2BA 1RL4A 1BS8A 4JE8A 1WS0A 5CY8A 1BS5A 2AIAA 3UWAA 1RQCA 5JF3A 2OS0A 4AL2A 1Y6HA 1S17A 4E9AA 1V3YA 4WXLA 5CP0A 5CWXA 1LRUA 3FWXA 4NT8A 2EW7A 3L87A 1SV2A 5JF5A 5JF6A 5CPDA 2W3TA 2OKLA 3PN5A 1VEYA 5E5DA 3U7LA 5JF8A 1ICJA 3M6OA 4DR9A 3QU1A 1LQWA 3O3JA 5CXJA 3PN3A 2AIEP 5T8ZA 4AZ4A 1G27A 1XEOA 1LMHA 3PN2A 3SW8P 1LMEA 3M6RA 3OCAA 2EW5A 1BSZA 4E9BA 1ZY0A 1VEVA 5CX0A 4JE7A 4AL3A 3U7KA 5JEZA 5JEYA 2AI8A 2DEFA 5CVQA 3K6LA 5KOBA 2W3UA 2OS1A 3CMDA 5JF0A 5CVPA 5JF1A 1ZXZA 3PN4A 5JEXA 4WXKA 1IX1A 1Q1YA 3UWBA 1BSJA 1LM4A 4JE6A 1SZZA 3U7NA 5JF7A 1DFFA 2EW6A 3CPMA 4EOXP 1BS4A 1LRYA 2OS3A 1VEZA 5JF2A 5CY7A 1XENA 3PN6A 1ZY1A 3U7MA 1DEFA 1BS7A 1JYMA 3STRP 1XEMA 1WS1A 5CWYA 1BSKA 1N5NA 4DR8A 3M6QA 1LM6A 3M6PA 5JF4A 2KMNA 3G5PA 1LQYA 3G6NA 1BS6A 5J46A 3U04A 3SVJP 3G5KA 2AI9A 3E3UA 5HGWA
chains in the Genus database with same CATH superfamily
5CVKA 1G2AA 2AI7A 5I2BA 1RL4A 1BS8A 4JE8A 1WS0A 5CY8A 1BS5A 2AIAA 3UWAA 1RQCA 5JF3A 2OS0A 4AL2A 1Y6HA 1S17A 4E9AA 1V3YA 4WXLA 5CP0A 5CWXA 1LRUA 3FWXA 4NT8A 2EW7A 3L87A 1SV2A 5JF5A 5JF6A 5CPDA 2W3TA 2OKLA 3PN5A 1VEYA 5E5DA 3U7LA 5JF8A 1ICJA 3M6OA 4DR9A 3QU1A 1LQWA 3O3JA 5CXJA 3PN3A 2AIEP 5T8ZA 4AZ4A 1G27A 1XEOA 1LMHA 3PN2A 3SW8P 1LMEA 3M6RA 3OCAA 2EW5A 1BSZA 4E9BA 1ZY0A 1VEVA 5CX0A 4JE7A 4AL3A 3U7KA 5JEZA 5JEYA 2AI8A 2DEFA 5CVQA 3K6LA 5KOBA 2W3UA 2OS1A 3CMDA 5JF0A 5CVPA 5JF1A 1ZXZA 3PN4A 5JEXA 4WXKA 1IX1A 1Q1YA 3UWBA 1BSJA 1LM4A 4JE6A 1SZZA 3U7NA 5JF7A 1DFFA 2EW6A 3CPMA 4EOXP 1BS4A 1LRYA 2OS3A 1VEZA 5JF2A 5CY7A 1XENA 3PN6A 1ZY1A 3U7MA 1DEFA 1BS7A 1JYMA 3STRP 1XEMA 1WS1A 5CWYA 1BSKA 1N5NA 4DR8A 3M6QA 1LM6A 3M6PA 5JF4A 2KMNA 3G5PA 1LQYA 3G6NA 1BS6A 5J46A 3U04A 3SVJP 3G5KA 2AI9A 3E3UA 5HGWA
chains in the Genus database with same CATH topology
5CVKA 1G2AA 2AI7A 5I2BA 1RL4A 1BS8A 4JE8A 1WS0A 5CY8A 1BS5A 2AIAA 3UWAA 1RQCA 5JF3A 2OS0A 4AL2A 1Y6HA 1S17A 4E9AA 1V3YA 4WXLA 5CP0A 5CWXA 1LRUA 3FWXA 4NT8A 2EW7A 3L87A 1SV2A 5JF5A 5JF6A 5CPDA 2W3TA 2OKLA 3PN5A 1VEYA 5E5DA 3U7LA 5JF8A 1ICJA 3M6OA 4DR9A 3QU1A 1LQWA 3O3JA 5CXJA 3PN3A 2AIEP 5T8ZA 4AZ4A 1G27A 1XEOA 1LMHA 3PN2A 3SW8P 1LMEA 3M6RA 3OCAA 2EW5A 1BSZA 4E9BA 1ZY0A 1VEVA 5CX0A 4JE7A 4AL3A 3U7KA 5JEZA 5JEYA 2AI8A 2DEFA 5CVQA 3K6LA 5KOBA 2W3UA 2OS1A 3CMDA 5JF0A 5CVPA 5JF1A 1ZXZA 3PN4A 5JEXA 4WXKA 1IX1A 1Q1YA 3UWBA 1BSJA 1LM4A 4JE6A 1SZZA 3U7NA 5JF7A 1DFFA 2EW6A 3CPMA 4EOXP 1BS4A 1LRYA 2OS3A 1VEZA 5JF2A 5CY7A 1XENA 3PN6A 1ZY1A 3U7MA 1DEFA 1BS7A 1JYMA 3STRP 1XEMA 1WS1A 5CWYA 1BSKA 1N5NA 4DR8A 3M6QA 1LM6A 3M6PA 5JF4A 2KMNA 3G5PA 1LQYA 3G6NA 1BS6A 5J46A 3U04A 3SVJP 3G5KA 2AI9A 3E3UA 5HGWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CVK A;  1G2A A;  2AI7 A;  5I2B A;  1RL4 A;  1BS8 A;  4JE8 A;  1WS0 A;  5CY8 A;  1BS5 A;  2AIA A;  3UWA A;  1RQC A;  5JF3 A;  2OS0 A;  4AL2 A;  1Y6H A;  1S17 A;  4E9A A;  1V3Y A;  4WXL A;  5CP0 A;  5CWX A;  1LRU A;  3FWX A;  4NT8 A;  2EW7 A;  3L87 A;  1SV2 A;  5JF5 A;  5JF6 A;  5CPD A;  2W3T A;  2OKL A;  3PN5 A;  1VEY A;  5E5D A;  3U7L A;  5JF8 A;  1ICJ A;  3M6O A;  4DR9 A;  3QU1 A;  1LQW A;  3O3J A;  5CXJ A;  3PN3 A;  2AIE P;  5T8Z A;  4AZ4 A;  1G27 A;  1XEO A;  1LMH A;  3PN2 A;  3SW8 P;  1LME A;  3M6R A;  3OCA A;  2EW5 A;  1BSZ A;  4E9B A;  1ZY0 A;  1VEV A;  5CX0 A;  4JE7 A;  4AL3 A;  3U7K A;  5JEZ A;  5JEY A;  2AI8 A;  2DEF A;  5CVQ A;  3K6L A;  5KOB A;  2W3U A;  2OS1 A;  3CMD A;  5JF0 A;  5CVP A;  5JF1 A;  1ZXZ A;  3PN4 A;  5JEX A;  4WXK A;  1IX1 A;  1Q1Y A;  3UWB A;  1BSJ A;  1LM4 A;  4JE6 A;  1SZZ A;  3U7N A;  5JF7 A;  1DFF A;  2EW6 A;  3CPM A;  4EOX P;  1BS4 A;  1LRY A;  2OS3 A;  1VEZ A;  5JF2 A;  5CY7 A;  1XEN A;  3PN6 A;  1ZY1 A;  3U7M A;  1DEF A;  1BS7 A;  1JYM A;  3STR P;  1XEM A;  1WS1 A;  5CWY A;  1BSK A;  1N5N A;  4DR8 A;  3M6Q A;  1LM6 A;  3M6P A;  5JF4 A;  2KMN A;  3G5P A;  1LQY A;  3G6N A;  1BS6 A;  5J46 A;  3U04 A;  3SVJ P;  3G5K A;  2AI9 A;  3E3U A;  5HGW A; 
#chains in the Genus database with same CATH topology
 5CVK A;  1G2A A;  2AI7 A;  5I2B A;  1RL4 A;  1BS8 A;  4JE8 A;  1WS0 A;  5CY8 A;  1BS5 A;  2AIA A;  3UWA A;  1RQC A;  5JF3 A;  2OS0 A;  4AL2 A;  1Y6H A;  1S17 A;  4E9A A;  1V3Y A;  4WXL A;  5CP0 A;  5CWX A;  1LRU A;  3FWX A;  4NT8 A;  2EW7 A;  3L87 A;  1SV2 A;  5JF5 A;  5JF6 A;  5CPD A;  2W3T A;  2OKL A;  3PN5 A;  1VEY A;  5E5D A;  3U7L A;  5JF8 A;  1ICJ A;  3M6O A;  4DR9 A;  3QU1 A;  1LQW A;  3O3J A;  5CXJ A;  3PN3 A;  2AIE P;  5T8Z A;  4AZ4 A;  1G27 A;  1XEO A;  1LMH A;  3PN2 A;  3SW8 P;  1LME A;  3M6R A;  3OCA A;  2EW5 A;  1BSZ A;  4E9B A;  1ZY0 A;  1VEV A;  5CX0 A;  4JE7 A;  4AL3 A;  3U7K A;  5JEZ A;  5JEY A;  2AI8 A;  2DEF A;  5CVQ A;  3K6L A;  5KOB A;  2W3U A;  2OS1 A;  3CMD A;  5JF0 A;  5CVP A;  5JF1 A;  1ZXZ A;  3PN4 A;  5JEX A;  4WXK A;  1IX1 A;  1Q1Y A;  3UWB A;  1BSJ A;  1LM4 A;  4JE6 A;  1SZZ A;  3U7N A;  5JF7 A;  1DFF A;  2EW6 A;  3CPM A;  4EOX P;  1BS4 A;  1LRY A;  2OS3 A;  1VEZ A;  5JF2 A;  5CY7 A;  1XEN A;  3PN6 A;  1ZY1 A;  3U7M A;  1DEF A;  1BS7 A;  1JYM A;  3STR P;  1XEM A;  1WS1 A;  5CWY A;  1BSK A;  1N5N A;  4DR8 A;  3M6Q A;  1LM6 A;  3M6P A;  5JF4 A;  2KMN A;  3G5P A;  1LQY A;  3G6N A;  1BS6 A;  5J46 A;  3U04 A;  3SVJ P;  3G5K A;  2AI9 A;  3E3U A;  5HGW A; 
#chains in the Genus database with same CATH homology
 5CVK A;  1G2A A;  2AI7 A;  5I2B A;  1RL4 A;  1BS8 A;  4JE8 A;  1WS0 A;  5CY8 A;  1BS5 A;  2AIA A;  3UWA A;  1RQC A;  5JF3 A;  2OS0 A;  4AL2 A;  1Y6H A;  1S17 A;  4E9A A;  1V3Y A;  4WXL A;  5CP0 A;  5CWX A;  1LRU A;  3FWX A;  4NT8 A;  2EW7 A;  3L87 A;  1SV2 A;  5JF5 A;  5JF6 A;  5CPD A;  2W3T A;  2OKL A;  3PN5 A;  1VEY A;  5E5D A;  3U7L A;  5JF8 A;  1ICJ A;  3M6O A;  4DR9 A;  3QU1 A;  1LQW A;  3O3J A;  5CXJ A;  3PN3 A;  2AIE P;  5T8Z A;  4AZ4 A;  1G27 A;  1XEO A;  1LMH A;  3PN2 A;  3SW8 P;  1LME A;  3M6R A;  3OCA A;  2EW5 A;  1BSZ A;  4E9B A;  1ZY0 A;  1VEV A;  5CX0 A;  4JE7 A;  4AL3 A;  3U7K A;  5JEZ A;  5JEY A;  2AI8 A;  2DEF A;  5CVQ A;  3K6L A;  5KOB A;  2W3U A;  2OS1 A;  3CMD A;  5JF0 A;  5CVP A;  5JF1 A;  1ZXZ A;  3PN4 A;  5JEX A;  4WXK A;  1IX1 A;  1Q1Y A;  3UWB A;  1BSJ A;  1LM4 A;  4JE6 A;  1SZZ A;  3U7N A;  5JF7 A;  1DFF A;  2EW6 A;  3CPM A;  4EOX P;  1BS4 A;  1LRY A;  2OS3 A;  1VEZ A;  5JF2 A;  5CY7 A;  1XEN A;  3PN6 A;  1ZY1 A;  3U7M A;  1DEF A;  1BS7 A;  1JYM A;  3STR P;  1XEM A;  1WS1 A;  5CWY A;  1BSK A;  1N5N A;  4DR8 A;  3M6Q A;  1LM6 A;  3M6P A;  5JF4 A;  2KMN A;  3G5P A;  1LQY A;  3G6N A;  1BS6 A;  5J46 A;  3U04 A;  3SVJ P;  3G5K A;  2AI9 A;  3E3U A;  5HGW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...