3T20A

Crystal structure of pseudomonas aeruginosa occk5 (opdh)
Total Genus 95
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
391
structure length
362
Chain Sequence
AGFLEDSKASLETRNFYMNRDFRKREEWAQGFILNLQSGYTQGTVGFGLDAMGMLGVKLDSPDTYSKLGLTAKVKVSQSELKVGTLIPKLPSVQPNNGRIFPQIFEGALLTSKEIKDLGFTAGRLEKTKIDSEDLALNDKNGRFAGVSADHFDLGGLDYKLTDQLTASYHYSNLQDVYRQHFVGLLHSWPIGPGELTSDLRFARSTDSGSAKAGGIDNKSLNGMFTYSLGNHAFGAAWQRMNGDDAFPYLEGSNPYLVNFVQVNDFAGPKERSWQLRYDYDFVGLGIPGLTFMTRYVKGDNVELAGQGEGREWERNTELQYVFQSGALKNLGIRWRNATFRSNFTRDIDENRLIVSYTLPIW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords Cis-aconitate porin OpdH
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 95
structure length 362
sequence length 391
ec nomenclature
pdb deposition date 2011-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3t20A01
3VY8X 4C69X 4RJWA 3VZUX 5JDPA 1GFOA 2OMFA 2XE5A 4LSHA 2Y0HA 4RJXA 4AUIA 1PHOA 3VZTX 1GFMA 4FSPA 3T24A 5DL7A 2FGRA 1OSMA 4KR4A 4FSOA 1HXUA 2PRNA 3SZVA 4KRAA 3A2SX 3UPGA 3POXA 3SYBA 4GCQA 1HXXA 4LSEA 1HXTA 4D64A 3HWBA 3UU2A 3POQA 2K4TA 2Y0KA 3NSGA 4D65A 2XE3A 4GCSA 1GFQA 7PRNA 4D5UA 3FYXA 1PRNA 2FGQX 2ODJA 4LSIA 4LSFA 3O0EA 6PRNA 4BUMX 5DL5A 2J1NA 2O4VA 2Y2XA 4KR8A 4FOZA 1H6S1 4FRXA 4JFBA 3SY9A 1BT9A 1E54A 3PRNA 3SY7A 5DL6A 2ZFGA 5PRNA 1OPFA 2XE2A 2J4UP 2XG6A 4FRTA 2PORA 2QTKA 3SZDA 3VY9X 1GFNA 3K19A 8PRNA 3WI5A 3T20A 3PORA 4FMSA 4FT6A 2Y0LA 4GCPA 1GFPA 3VZWX 5DL8A 1MPFA 3EMNX 3WI4A 5FVNA 3POUA 1BH3A 2ZLDA 3HW9A 3SYSA 3JTYA 2XE1A 3T0SA
chains in the Genus database with same CATH superfamily
4GHBA 3VY8X 4XNLA 2XTQA 4FZMA 4O49A 2KC0A 2W80C 3DWOX 4FZLA 4N74A 2KZ7B 3UAQA 4FZNA 4C69X 4RJWA 3AA1A 3VZUX 4N75A 5IYUA 1GFOA 5JDPA 4PJ0O 2OMFA 3LK42 2XE5A 3HOEA 3JCUO 3AAAA 4LSHA 2R89A 4AYMC 2JMMA 3QRCA 2Y0HA 2X27X 4RJXA 4RLCA 4AKMA 4AUIA 1PHOA 3VZTX 1GFMA 3LK41 3AA6B 2YPVA 3AA7A 1S5LO 3HOLA 4FSPA 5EE2A 5DL7A 3T24A 1ZHTA 2FGRA 4K3BA 2KDYA 1QJPA 1OSMA 5T5FA 5GV0A 4KR4A 2KZ7A 4XNKA 4PUXA 2WJRA 4FSOA 4O4UA 4O3YA 2WVPA 4F4BA 3DA3A 1IZNB 1HXUA 5KAFO 2PRNA 3SZVA 2N2LA 4E1TA 1QJ8A 3DA4A 3AA7B 4O3ZA 2R4LA 1BXWA 4KRAA 3A2SX 3UPGA 3POXA 4AYID 5E79O 3A0HO 2LFUA 3KVDD 4GCQA 1HXXA 3SYBA 5AFUK 4FUVA 4UB6O 4CTDA 4U9CA 3PGRA 3VE2A 4LSEA 1T1LA 1HXTA 1MM4A 3HWBA 3UU2A 3POQA 3QRAA 4D64A 2R4PA 3V8UA 2N2MA 2X9KA 4AYEC 1IZNA 2K4TA 2Y0KA 3NSGA 4D65A 2XE3A 2MHLA 3TZGA 4O3XB 1P4TA 4GCSA 1GFQA 4O4XA 7PRNA 4D5UA 1ZHZA 1Q9GA 2Y7SA 3FYXA 1PRNA 2YNKA 5G39A 5GTIO 5D5DA 2FGQX 4E1SA 4O3WA 2R4NA 4C4VA 2ODJA 3AA0B 4LSIA 4LSFA 1ORMA 3G7GA 2KXPB 3O0EA 3RBHA 6PRNA 2IWWA 4BUMX 5DL5A 2WJQA 5B66O 2J1NA 2O4VA 2Y2XA 4PR7A 4QQ1A 4UB8O 5G38A 4KR8A 2F1TA 4AKRB 3KZIO 3C5OA 5G26A 4FOZA 1H6S1 4FRXA 4JFBA 4K3CA 5H2FO 3SY9A 1BT9A 2M07A 2GE4A 1E54A 4FQEA 4AFKA 4AZLA 4C4VB 3PRNA 5ADXK 2XTRA 4RL9A 1THQA 3SY7A 4Z3TA 5DL6A 3AA0A 3WU2O 5GTHO 2KXPA 4JCHA 2ZFGA 4RLBA 1Q9FA 5PRNA 1ZHWA 2F1VA 1OPFA 3A0BO 2XE2A 3LK3A 3PF1A 3BRYA 4AKRA 2J4UP 2XG6A 4FRTA 2PORA 2QTKA 3SZDA 1ZHXA 3VE1A 3BRZA 1GFNA 3VY9X 5B5EO 2MNHA 3AAEB 3K19A 4FESA 8PRNA 3WI5A 3NJTA 3T20A 3PORA 4FMSA 4C00A 2R88A 2IWVA 4FT6A 1T16A 5KAIO 3LK3B 4B61A 1G90A 3BS0A 2Y0LA 4GCPA 1GFPA 2R4OA 3PQUA 4G75A 5AFUL 3DZMA 4G76A 3VZWX 5ADXL 5TISO 4AYNA 3DWNA 5DL8A 2ERVA 3AAEA 4GF4A 1YS5A 3LK2A 1MPFA 2M06A 3AA1B 3PGUA 2W81C 3EMNX 3WI4A 5FVNA 4IL6O 5G3AA 4N58A 3AAAB 3POUA 1BH3A 4AYDC 2XMXA 2ZLDA 2F1CX 1ZHYA 3HW9A 3SYSA 1MM5A 2AXTO 2K0LA 2LHFA 3GP6A 2XE1A 3JTYA 3PGSA 3PQSA 2R8AA 4N59A 2JQYA 1QJ9A 3T0SA 3LK2B 3AA6A
chains in the Genus database with same CATH topology
4GHBA 3VY8X 4XNLA 2XTQA 4FZMA 4O49A 2KC0A 2W80C 3UAQA 4FZLA 2KZ7B 4FZNA 4C69X 4RJWA 3AA1A 3VZUX 5IYUA 1GFOA 5JDPA 2OMFA 3LK42 2XE5A 3HOEA 3AAAA 4LSHA 4AYMC 2JMMA 3QRCA 2Y0HA 2X27X 4RJXA 4RLCA 4AKMA 4AUIA 1PHOA 3VZTX 1GFMA 3LK41 3AA6B 2YPVA 3AA7A 3HOLA 4FSPA 5EE2A 5DL7A 3T24A 1ZHTA 2FGRA 2KDYA 1QJPA 1OSMA 5T5FA 5GV0A 4KR4A 2KZ7A 4XNKA 4PUXA 4FSOA 4O4UA 4O3YA 4F4BA 3DA3A 1IZNB 1HXUA 4E1TA 2PRNA 3SZVA 2N2LA 1QJ8A 3DA4A 3AA7B 4O3ZA 1BXWA 4KRAA 3A2SX 3UPGA 3POXA 4AYID 2LFUA 3KVDD 4GCQA 1HXXA 3SYBA 5AFUK 4FUVA 4U9CA 3VE2A 4LSEA 1HXTA 1MM4A 3HWBA 3UU2A 3POQA 3QRAA 4D64A 3V8UA 2N2MA 4AYEC 1IZNA 2K4TA 2Y0KA 3NSGA 4D65A 2XE3A 2MHLA 3TZGA 4O3XB 1P4TA 4GCSA 1GFQA 4O4XA 7PRNA 4D5UA 1ZHZA 1Q9GA 2Y7SA 3FYXA 1PRNA 2YNKA 5D5DA 2FGQX 4E1SA 4O3WA 2ODJA 3AA0B 4LSIA 4LSFA 1ORMA 3G7GA 2KXPB 3O0EA 3RBHA 6PRNA 4BUMX 5DL5A 2J1NA 2O4VA 2Y2XA 4QQ1A 4KR8A 2F1TA 4AKRB 3C5OA 5G26A 4FOZA 1H6S1 4FRXA 4JFBA 3SY9A 1BT9A 2M07A 2GE4A 1E54A 4AFKA 4AZLA 5ADXK 3PRNA 2XTRA 4RL9A 1THQA 3SY7A 4Z3TA 5DL6A 3AA0A 2KXPA 4JCHA 2ZFGA 4RLBA 1Q9FA 5PRNA 1ZHWA 2F1VA 1OPFA 2XE2A 3LK3A 4AKRA 2J4UP 2XG6A 4FRTA 2PORA 2QTKA 3SZDA 1ZHXA 3VE1A 3VY9X 1GFNA 2MNHA 3AAEB 3K19A 4FESA 8PRNA 3WI5A 3T20A 3PORA 4FMSA 4FT6A 3LK3B 4B61A 1G90A 2Y0LA 4GCPA 1GFPA 3PQUA 4G75A 5AFUL 4G76A 3VZWX 5ADXL 4AYNA 5DL8A 2ERVA 3AAEA 4GF4A 1YS5A 3LK2A 1MPFA 2M06A 3AA1B 2W81C 3EMNX 3WI4A 5FVNA 4N58A 3AAAB 3POUA 1BH3A 4AYDC 2XMXA 2ZLDA 3HW9A 1ZHYA 3SYSA 1MM5A 2K0LA 2LHFA 3GP6A 3JTYA 2XE1A 3PQSA 4N59A 1QJ9A 3T0SA 3LK2B 3AA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VY8 X;  4C69 X;  4RJW A;  3VZU X;  5JDP A;  1GFO A;  2OMF A;  2XE5 A;  4LSH A;  2Y0H A;  4RJX A;  4AUI A;  1PHO A;  3VZT X;  1GFM A;  4FSP A;  3T24 A;  5DL7 A;  2FGR A;  1OSM A;  4KR4 A;  4FSO A;  1HXU A;  2PRN A;  3SZV A;  4KRA A;  3A2S X;  3UPG A;  3POX A;  3SYB A;  4GCQ A;  1HXX A;  4LSE A;  1HXT A;  4D64 A;  3HWB A;  3UU2 A;  3POQ A;  2K4T A;  2Y0K A;  3NSG A;  4D65 A;  2XE3 A;  4GCS A;  1GFQ A;  7PRN A;  4D5U A;  3FYX A;  1PRN A;  2FGQ X;  2ODJ A;  4LSI A;  4LSF A;  3O0E A;  6PRN A;  4BUM X;  5DL5 A;  2J1N A;  2O4V A;  2Y2X A;  4KR8 A;  4FOZ A;  1H6S 1;  4FRX A;  4JFB A;  3SY9 A;  1BT9 A;  1E54 A;  3PRN A;  3SY7 A;  5DL6 A;  2ZFG A;  5PRN A;  1OPF A;  2XE2 A;  2J4U P;  2XG6 A;  4FRT A;  2POR A;  2QTK A;  3SZD A;  3VY9 X;  1GFN A;  3K19 A;  8PRN A;  3WI5 A;  3T20 A;  3POR A;  4FMS A;  4FT6 A;  2Y0L A;  4GCP A;  1GFP A;  3VZW X;  5DL8 A;  1MPF A;  3EMN X;  3WI4 A;  5FVN A;  3POU A;  1BH3 A;  2ZLD A;  3HW9 A;  3SYS A;  3JTY A;  2XE1 A;  3T0S A; 
#chains in the Genus database with same CATH topology
 4GHB A;  3VY8 X;  4XNL A;  2XTQ A;  4FZM A;  4O49 A;  2KC0 A;  2W80 C;  3DWO X;  4FZL A;  4N74 A;  2KZ7 B;  3UAQ A;  4FZN A;  4C69 X;  4RJW A;  3AA1 A;  3VZU X;  4N75 A;  5IYU A;  1GFO A;  5JDP A;  4PJ0 O;  2OMF A;  3LK4 2;  2XE5 A;  3HOE A;  3JCU O;  3AAA A;  4LSH A;  2R89 A;  4AYM C;  2JMM A;  3QRC A;  2Y0H A;  2X27 X;  4RJX A;  4RLC A;  4AKM A;  4AUI A;  1PHO A;  3VZT X;  1GFM A;  3LK4 1;  3AA6 B;  2YPV A;  3AA7 A;  1S5L O;  3HOL A;  4FSP A;  5EE2 A;  5DL7 A;  3T24 A;  1ZHT A;  2FGR A;  4K3B A;  2KDY A;  1QJP A;  1OSM A;  5T5F A;  5GV0 A;  4KR4 A;  2KZ7 A;  4XNK A;  4PUX A;  2WJR A;  4FSO A;  4O4U A;  4O3Y A;  2WVP A;  4F4B A;  3DA3 A;  1IZN B;  1HXU A;  5KAF O;  2PRN A;  3SZV A;  2N2L A;  4E1T A;  1QJ8 A;  3DA4 A;  3AA7 B;  4O3Z A;  2R4L A;  1BXW A;  4KRA A;  3A2S X;  3UPG A;  3POX A;  4AYI D;  5E79 O;  3A0H O;  2LFU A;  3KVD D;  4GCQ A;  1HXX A;  3SYB A;  5AFU K;  4FUV A;  4UB6 O;  4CTD A;  4U9C A;  3PGR A;  3VE2 A;  4LSE A;  1T1L A;  1HXT A;  1MM4 A;  3HWB A;  3UU2 A;  3POQ A;  3QRA A;  4D64 A;  2R4P A;  3V8U A;  2N2M A;  2X9K A;  4AYE C;  1IZN A;  2K4T A;  2Y0K A;  3NSG A;  4D65 A;  2XE3 A;  2MHL A;  3TZG A;  4O3X B;  1P4T A;  4GCS A;  1GFQ A;  4O4X A;  7PRN A;  4D5U A;  1ZHZ A;  1Q9G A;  2Y7S A;  3FYX A;  1PRN A;  2YNK A;  5G39 A;  5GTI O;  5D5D A;  2FGQ X;  4E1S A;  4O3W A;  2R4N A;  4C4V A;  2ODJ A;  3AA0 B;  4LSI A;  4LSF A;  1ORM A;  3G7G A;  2KXP B;  3O0E A;  3RBH A;  6PRN A;  2IWW A;  4BUM X;  5DL5 A;  2WJQ A;  5B66 O;  2J1N A;  2O4V A;  2Y2X A;  4PR7 A;  4QQ1 A;  4UB8 O;  5G38 A;  4KR8 A;  2F1T A;  4AKR B;  3KZI O;  3C5O A;  5G26 A;  4FOZ A;  1H6S 1;  4FRX A;  4JFB A;  4K3C A;  5H2F O;  3SY9 A;  1BT9 A;  2M07 A;  2GE4 A;  1E54 A;  4FQE A;  4AFK A;  4AZL A;  4C4V B;  3PRN A;  5ADX K;  2XTR A;  4RL9 A;  1THQ A;  3SY7 A;  4Z3T A;  5DL6 A;  3AA0 A;  3WU2 O;  5GTH O;  2KXP A;  4JCH A;  2ZFG A;  4RLB A;  1Q9F A;  5PRN A;  1ZHW A;  2F1V A;  1OPF A;  3A0B O;  2XE2 A;  3LK3 A;  3PF1 A;  3BRY A;  4AKR A;  2J4U P;  2XG6 A;  4FRT A;  2POR A;  2QTK A;  3SZD A;  1ZHX A;  3VE1 A;  3BRZ A;  1GFN A;  3VY9 X;  5B5E O;  2MNH A;  3AAE B;  3K19 A;  4FES A;  8PRN A;  3WI5 A;  3NJT A;  3T20 A;  3POR A;  4FMS A;  4C00 A;  2R88 A;  2IWV A;  4FT6 A;  1T16 A;  5KAI O;  3LK3 B;  4B61 A;  1G90 A;  3BS0 A;  2Y0L A;  4GCP A;  1GFP A;  2R4O A;  3PQU A;  4G75 A;  5AFU L;  3DZM A;  4G76 A;  3VZW X;  5ADX L;  5TIS O;  4AYN A;  3DWN A;  5DL8 A;  2ERV A;  3AAE A;  4GF4 A;  1YS5 A;  3LK2 A;  1MPF A;  2M06 A;  3AA1 B;  3PGU A;  2W81 C;  3EMN X;  3WI4 A;  5FVN A;  4IL6 O;  5G3A A;  4N58 A;  3AAA B;  3POU A;  1BH3 A;  4AYD C;  2XMX A;  2ZLD A;  2F1C X;  1ZHY A;  3HW9 A;  3SYS A;  1MM5 A;  2AXT O;  2K0L A;  2LHF A;  3GP6 A;  2XE1 A;  3JTY A;  3PGS A;  3PQS A;  2R8A A;  4N59 A;  2JQY A;  1QJ9 A;  3T0S A;  3LK2 B;  3AA6 A; 
#chains in the Genus database with same CATH homology
 4GHB A;  3VY8 X;  4XNL A;  2XTQ A;  4FZM A;  4O49 A;  2KC0 A;  2W80 C;  3UAQ A;  4FZL A;  2KZ7 B;  4FZN A;  4C69 X;  4RJW A;  3AA1 A;  3VZU X;  5IYU A;  1GFO A;  5JDP A;  2OMF A;  3LK4 2;  2XE5 A;  3HOE A;  3AAA A;  4LSH A;  4AYM C;  2JMM A;  3QRC A;  2Y0H A;  2X27 X;  4RJX A;  4RLC A;  4AKM A;  4AUI A;  1PHO A;  3VZT X;  1GFM A;  3LK4 1;  3AA6 B;  2YPV A;  3AA7 A;  3HOL A;  4FSP A;  5EE2 A;  5DL7 A;  3T24 A;  1ZHT A;  2FGR A;  2KDY A;  1QJP A;  1OSM A;  5T5F A;  5GV0 A;  4KR4 A;  2KZ7 A;  4XNK A;  4PUX A;  4FSO A;  4O4U A;  4O3Y A;  4F4B A;  3DA3 A;  1IZN B;  1HXU A;  4E1T A;  2PRN A;  3SZV A;  2N2L A;  1QJ8 A;  3DA4 A;  3AA7 B;  4O3Z A;  1BXW A;  4KRA A;  3A2S X;  3UPG A;  3POX A;  4AYI D;  2LFU A;  3KVD D;  4GCQ A;  1HXX A;  3SYB A;  5AFU K;  4FUV A;  4U9C A;  3VE2 A;  4LSE A;  1HXT A;  1MM4 A;  3HWB A;  3UU2 A;  3POQ A;  3QRA A;  4D64 A;  3V8U A;  2N2M A;  4AYE C;  1IZN A;  2K4T A;  2Y0K A;  3NSG A;  4D65 A;  2XE3 A;  2MHL A;  3TZG A;  4O3X B;  1P4T A;  4GCS A;  1GFQ A;  4O4X A;  7PRN A;  4D5U A;  1ZHZ A;  1Q9G A;  2Y7S A;  3FYX A;  1PRN A;  2YNK A;  5D5D A;  2FGQ X;  4E1S A;  4O3W A;  2ODJ A;  3AA0 B;  4LSI A;  4LSF A;  1ORM A;  3G7G A;  2KXP B;  3O0E A;  3RBH A;  6PRN A;  4BUM X;  5DL5 A;  2J1N A;  2O4V A;  2Y2X A;  4QQ1 A;  4KR8 A;  2F1T A;  4AKR B;  3C5O A;  5G26 A;  4FOZ A;  1H6S 1;  4FRX A;  4JFB A;  3SY9 A;  1BT9 A;  2M07 A;  2GE4 A;  1E54 A;  4AFK A;  4AZL A;  5ADX K;  3PRN A;  2XTR A;  4RL9 A;  1THQ A;  3SY7 A;  4Z3T A;  5DL6 A;  3AA0 A;  2KXP A;  4JCH A;  2ZFG A;  4RLB A;  1Q9F A;  5PRN A;  1ZHW A;  2F1V A;  1OPF A;  2XE2 A;  3LK3 A;  4AKR A;  2J4U P;  2XG6 A;  4FRT A;  2POR A;  2QTK A;  3SZD A;  1ZHX A;  3VE1 A;  3VY9 X;  1GFN A;  2MNH A;  3AAE B;  3K19 A;  4FES A;  8PRN A;  3WI5 A;  3T20 A;  3POR A;  4FMS A;  4FT6 A;  3LK3 B;  4B61 A;  1G90 A;  2Y0L A;  4GCP A;  1GFP A;  3PQU A;  4G75 A;  5AFU L;  4G76 A;  3VZW X;  5ADX L;  4AYN A;  5DL8 A;  2ERV A;  3AAE A;  4GF4 A;  1YS5 A;  3LK2 A;  1MPF A;  2M06 A;  3AA1 B;  2W81 C;  3EMN X;  3WI4 A;  5FVN A;  4N58 A;  3AAA B;  3POU A;  1BH3 A;  4AYD C;  2XMX A;  2ZLD A;  3HW9 A;  1ZHY A;  3SYS A;  1MM5 A;  2K0L A;  2LHF A;  3GP6 A;  3JTY A;  2XE1 A;  3PQS A;  4N59 A;  1QJ9 A;  3T0S A;  3LK2 B;  3AA6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...