3THJA

Crystal structure of the co2+2-hai-l-orn complex
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
314
structure length
314
Chain Sequence
RTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLNAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase-1
publication title Crystal structures of complexes with cobalt-reconstituted human arginase I.
pubmed doi rcsb
source organism Homo sapiens
total genus 115
structure length 314
sequence length 314
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2011-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3thjA00
3TF3A 1ZPGA 3F80A 1GQ7A 3E6VA 3GMZA 4RHJA 4Q3PA 4Q3SA 1P8NA 3M1RA 2EF4A 1XFKA 4MYNA 4HWWA 1TA1A 1P8SA 4Q40A 3THHA 1P8OA 3MMRA 1CEVA 1WOGA 4IU0A 1T4TA 3TH7A 1HQ5A 4Q41A 2PHOA 4Q3UA 3SKKA 4IE1A 3E6KA 4FCIA 3E8QA 4RHMA 2CEVA 1P8QA 2PHAA 2A0MA 3MJLA 3THEA 1ZPEA 2EIVA 1P8RA 2ZAVA 3LP7A 4GWCA 1RLAA 4MYLA 4I06A 1WOIA 1P8MA 4IE2A 3GN0A 4IXUA 4IU1A 4IU4A 4Q3VA 1TBJA 4RHKA 1HQFA 4Q3QA 4GSMA 3PZLA 4Q3RA 3E8ZA 4RHLA 2AEBA 3KV2A 3CEVA 4Q42A 1TBHA 1P8PA 1GQ6A 4HXQA 1T4RA 3MFWA 3SJTA 3SL1A 1WVBA 1D3VA 4G3HA 2EF5A 1HQXA 2PLLA 3NIQA 2RLAA 4MYFA 1T4SA 4Q3TA 1R1OA 3RLAA 1T4PA 1T5GA 1HQHA 4MXRA 1HQGA 4IXVA 4RLAA 1PQ3A 4FCKA 4Q3RC 4MYKA 3LHLA 4ITYA 4GSVA 3DJ8A 1TBLA 1WOHA 3LP4A 5RLAA 5HJAA 4GWDA 4HZEA 3SL0A 4CEVA 3MFVA 3NIPA 4RHQA 4IU5A 4DZ4A 3E9BA 5HJ9A 4GSZA 3THJA 5CEVA 1WVAA 3NIOA 1T5FA 4RHIA 4IE3A
chains in the Genus database with same CATH superfamily
4ZUNA 5G17A 5A2SA 3TF3A 4CBTA 3MZ3A 4BZ9A 1ZPGA 3F80A 4BKXB 1GQ7A 3E6VA 2VQMA 5EFGA 4RN1A 3GMZA 5G0HA 4RHJA 4BZ6A 4Q3PA 4Q3SA 5EF8A 5DC5A 1P8NA 5G0YA 3M1RA 4ZUPA 3F06A 2EF4A 1XFKA 4MYNA 5G0IA 4HWWA 1TA1A 3SFFA 3EWFA 1P8SA 4ZUQA 5FCWA 4QA3A 3ZNRA 2V5WA 4Q40A 4QA5A 3THHA 5EENA 5G13A 4BZ7A 1P8OA 3MMRA 1CEVA 1WOGA 4IU0A 1T4TA 3Q9EA 4QA7A 3TH7A 1HQ5A 4Q41A 3Q9CA 5G11A 5EFHA 2PHOA 4Q3UA 3SKKA 4IE1A 3E6KA 5EFNA 5THVA 4FCIA 3E8QA 4RHMA 5EEFA 5G1BA 2CEVA 1P8QA 2PHAA 5G0GA 3EZTA 4LXZA 2A0MA 3MJLA 4QA0A 1ZPEA 2EIVA 3THEA 2GH6A 1P8RA 5G0XA 5D1CA 2ZAVA 3LP7A 5DC8A 4GWCA 5FUEA 3F07A 1RLAA 1VKGA 5EFBD 5G12A 4MYLA 4I06A 1T64A 1WOIA 1P8MA 4IE2A 3GN0A 4IXUA 4IU1A 5G10A 4IU4A 5THTA 5THSA 4Q3VA 1TBJA 2VQOA 4RHKA 1HQFA 4Q3QA 4GSMA 3PZLA 4Q3RA 5G1CA 3E8ZA 5BWZA 3EW8A 4RHLA 2AEBA 5D1BA 3KV2A 3CEVA 4Q42A 1TBHA 1P8PA 2VQWG 5EEMA 1ZZ0A 3RQDA 1GQ6A 4HXQA 1T4RA 5IX0A 1T67A 3C10A 3MFWA 4LY1A 5EF7A 3SL1A 3SJTA 3ZNSA 1WVBA 4CQFA 1C3PA 3MZ6A 1D3VA 4BZ8A 4G3HA 2EF5A 1HQXA 2PLLA 3NIQA 5EEKA 3C0ZA 2RLAA 4MYFA 1T4SA 4Q3TA 3MZ4A 5D1DA 1R1OA 4ZUMA 5EFKB 5ICNB 3RLAA 1T4PA 1T5GA 1HQHA 4MXRA 4QA1A 1HQGA 5DC6A 4IXVA 5EFJD 4RLAA 5G1AA 1T69A 3EZPA 4IE3A 2VCGA 1PQ3A 4FCKA 5EEIA 4Q3RC 4CBYA 4MYKA 3LHLA 5G0JA 4ITYA 5JI5A 5LI3A 1W22A 3MENA 4GSVA 4BZ5A 1ZZ1A 2V5XA 3DJ8A 1TBLA 1WOHA 3LP4A 3Q9FA 5RLAA 5HJAA 3C0YA 2VQQA 3SFHA 4GWDA 5G3WA 1C3RA 5IWGA 3MAXA 4HZEA 4QA4A 4ZUOA 3SL0A 4RN2A 4CEVA 3MFVA 2VQVA 3NIPA 4QA6A 5THUA 4RHQA 4IU5A 5DC7A 3E9BA 4RN0A 1C3SA 4ZURA 4DZ4A 1ZZ3A 5HJ9A 4A69A 3F0RA 4GSZA 3THJA 5CEVA 2VQJA 1WVAA 4QA2A 3MZ7A 3NIOA 1T5FA 4RHIA 3Q9BA
chains in the Genus database with same CATH topology
3TF3A 1ZPGA 3F80A 1GQ7A 3E6VA 3GMZA 4RHJA 4Q3PA 4Q3SA 1P8NA 3M1RA 2EF4A 1XFKA 4MYNA 4HWWA 1TA1A 1P8SA 4Q40A 3THHA 1P8OA 3MMRA 1CEVA 1WOGA 4IU0A 1T4TA 3TH7A 1HQ5A 4Q41A 2PHOA 4Q3UA 3SKKA 4IE1A 3E6KA 4FCIA 3E8QA 4RHMA 2CEVA 1P8QA 2PHAA 2A0MA 3MJLA 3THEA 1ZPEA 2EIVA 1P8RA 2ZAVA 3LP7A 4GWCA 1RLAA 4MYLA 4I06A 1WOIA 1P8MA 4IE2A 3GN0A 4IXUA 4IU1A 4IU4A 4Q3VA 1TBJA 4RHKA 1HQFA 4Q3QA 4GSMA 3PZLA 4Q3RA 3E8ZA 4RHLA 2AEBA 3KV2A 3CEVA 4Q42A 1TBHA 1P8PA 1GQ6A 4HXQA 1T4RA 3MFWA 3SJTA 3SL1A 1WVBA 1D3VA 4G3HA 2EF5A 1HQXA 2PLLA 3NIQA 2RLAA 4MYFA 1T4SA 4Q3TA 1R1OA 3RLAA 1T4PA 1T5GA 1HQHA 4MXRA 1HQGA 4IXVA 4RLAA 1PQ3A 4FCKA 4Q3RC 4MYKA 3LHLA 4ITYA 4GSVA 3DJ8A 1TBLA 1WOHA 3LP4A 5RLAA 5HJAA 4GWDA 4HZEA 3SL0A 4CEVA 3MFVA 3NIPA 4RHQA 4IU5A 4DZ4A 3E9BA 5HJ9A 4GSZA 3THJA 5CEVA 1WVAA 3NIOA 1T5FA 4RHIA 4IE3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TF3 A;  1ZPG A;  3F80 A;  1GQ7 A;  3E6V A;  3GMZ A;  4RHJ A;  4Q3P A;  4Q3S A;  1P8N A;  3M1R A;  2EF4 A;  1XFK A;  4MYN A;  4HWW A;  1TA1 A;  1P8S A;  4Q40 A;  3THH A;  1P8O A;  3MMR A;  1CEV A;  1WOG A;  4IU0 A;  1T4T A;  3TH7 A;  1HQ5 A;  4Q41 A;  2PHO A;  4Q3U A;  3SKK A;  4IE1 A;  3E6K A;  4FCI A;  3E8Q A;  4RHM A;  2CEV A;  1P8Q A;  2PHA A;  2A0M A;  3MJL A;  3THE A;  1ZPE A;  2EIV A;  1P8R A;  2ZAV A;  3LP7 A;  4GWC A;  1RLA A;  4MYL A;  4I06 A;  1WOI A;  1P8M A;  4IE2 A;  3GN0 A;  4IXU A;  4IU1 A;  4IU4 A;  4Q3V A;  1TBJ A;  4RHK A;  1HQF A;  4Q3Q A;  4GSM A;  3PZL A;  4Q3R A;  3E8Z A;  4RHL A;  2AEB A;  3KV2 A;  3CEV A;  4Q42 A;  1TBH A;  1P8P A;  1GQ6 A;  4HXQ A;  1T4R A;  3MFW A;  3SJT A;  3SL1 A;  1WVB A;  1D3V A;  4G3H A;  2EF5 A;  1HQX A;  2PLL A;  3NIQ A;  2RLA A;  4MYF A;  1T4S A;  4Q3T A;  1R1O A;  3RLA A;  1T4P A;  1T5G A;  1HQH A;  4MXR A;  1HQG A;  4IXV A;  4RLA A;  1PQ3 A;  4FCK A;  4Q3R C;  4MYK A;  3LHL A;  4ITY A;  4GSV A;  3DJ8 A;  1TBL A;  1WOH A;  3LP4 A;  5RLA A;  5HJA A;  4GWD A;  4HZE A;  3SL0 A;  4CEV A;  3MFV A;  3NIP A;  4RHQ A;  4IU5 A;  4DZ4 A;  3E9B A;  5HJ9 A;  4GSZ A;  3THJ A;  5CEV A;  1WVA A;  3NIO A;  1T5F A;  4RHI A;  4IE3 A; 
#chains in the Genus database with same CATH topology
 4ZUN A;  5G17 A;  5A2S A;  3TF3 A;  4CBT A;  3MZ3 A;  4BZ9 A;  1ZPG A;  3F80 A;  4BKX B;  1GQ7 A;  3E6V A;  2VQM A;  5EFG A;  4RN1 A;  3GMZ A;  5G0H A;  4RHJ A;  4BZ6 A;  4Q3P A;  4Q3S A;  5EF8 A;  5DC5 A;  1P8N A;  5G0Y A;  3M1R A;  4ZUP A;  3F06 A;  2EF4 A;  1XFK A;  4MYN A;  5G0I A;  4HWW A;  1TA1 A;  3SFF A;  3EWF A;  1P8S A;  4ZUQ A;  5FCW A;  4QA3 A;  3ZNR A;  2V5W A;  4Q40 A;  4QA5 A;  3THH A;  5EEN A;  5G13 A;  4BZ7 A;  1P8O A;  3MMR A;  1CEV A;  1WOG A;  4IU0 A;  1T4T A;  3Q9E A;  4QA7 A;  3TH7 A;  1HQ5 A;  4Q41 A;  3Q9C A;  5G11 A;  5EFH A;  2PHO A;  4Q3U A;  3SKK A;  4IE1 A;  3E6K A;  5EFN A;  5THV A;  4FCI A;  3E8Q A;  4RHM A;  5EEF A;  5G1B A;  2CEV A;  1P8Q A;  2PHA A;  5G0G A;  3EZT A;  4LXZ A;  2A0M A;  3MJL A;  4QA0 A;  1ZPE A;  2EIV A;  3THE A;  2GH6 A;  1P8R A;  5G0X A;  5D1C A;  2ZAV A;  3LP7 A;  5DC8 A;  4GWC A;  5FUE A;  3F07 A;  1RLA A;  1VKG A;  5EFB D;  5G12 A;  4MYL A;  4I06 A;  1T64 A;  1WOI A;  1P8M A;  4IE2 A;  3GN0 A;  4IXU A;  4IU1 A;  5G10 A;  4IU4 A;  5THT A;  5THS A;  4Q3V A;  1TBJ A;  2VQO A;  4RHK A;  1HQF A;  4Q3Q A;  4GSM A;  3PZL A;  4Q3R A;  5G1C A;  3E8Z A;  5BWZ A;  3EW8 A;  4RHL A;  2AEB A;  5D1B A;  3KV2 A;  3CEV A;  4Q42 A;  1TBH A;  1P8P A;  2VQW G;  5EEM A;  1ZZ0 A;  3RQD A;  1GQ6 A;  4HXQ A;  1T4R A;  5IX0 A;  1T67 A;  3C10 A;  3MFW A;  4LY1 A;  5EF7 A;  3SL1 A;  3SJT A;  3ZNS A;  1WVB A;  4CQF A;  1C3P A;  3MZ6 A;  1D3V A;  4BZ8 A;  4G3H A;  2EF5 A;  1HQX A;  2PLL A;  3NIQ A;  5EEK A;  3C0Z A;  2RLA A;  4MYF A;  1T4S A;  4Q3T A;  3MZ4 A;  5D1D A;  1R1O A;  4ZUM A;  5EFK B;  5ICN B;  3RLA A;  1T4P A;  1T5G A;  1HQH A;  4MXR A;  4QA1 A;  1HQG A;  5DC6 A;  4IXV A;  5EFJ D;  4RLA A;  5G1A A;  1T69 A;  3EZP A;  4IE3 A;  2VCG A;  1PQ3 A;  4FCK A;  5EEI A;  4Q3R C;  4CBY A;  4MYK A;  3LHL A;  5G0J A;  4ITY A;  5JI5 A;  5LI3 A;  1W22 A;  3MEN A;  4GSV A;  4BZ5 A;  1ZZ1 A;  2V5X A;  3DJ8 A;  1TBL A;  1WOH A;  3LP4 A;  3Q9F A;  5RLA A;  5HJA A;  3C0Y A;  2VQQ A;  3SFH A;  4GWD A;  5G3W A;  1C3R A;  5IWG A;  3MAX A;  4HZE A;  4QA4 A;  4ZUO A;  3SL0 A;  4RN2 A;  4CEV A;  3MFV A;  2VQV A;  3NIP A;  4QA6 A;  5THU A;  4RHQ A;  4IU5 A;  5DC7 A;  3E9B A;  4RN0 A;  1C3S A;  4ZUR A;  4DZ4 A;  1ZZ3 A;  5HJ9 A;  4A69 A;  3F0R A;  4GSZ A;  3THJ A;  5CEV A;  2VQJ A;  1WVA A;  4QA2 A;  3MZ7 A;  3NIO A;  1T5F A;  4RHI A;  3Q9B A; 
#chains in the Genus database with same CATH homology
 3TF3 A;  1ZPG A;  3F80 A;  1GQ7 A;  3E6V A;  3GMZ A;  4RHJ A;  4Q3P A;  4Q3S A;  1P8N A;  3M1R A;  2EF4 A;  1XFK A;  4MYN A;  4HWW A;  1TA1 A;  1P8S A;  4Q40 A;  3THH A;  1P8O A;  3MMR A;  1CEV A;  1WOG A;  4IU0 A;  1T4T A;  3TH7 A;  1HQ5 A;  4Q41 A;  2PHO A;  4Q3U A;  3SKK A;  4IE1 A;  3E6K A;  4FCI A;  3E8Q A;  4RHM A;  2CEV A;  1P8Q A;  2PHA A;  2A0M A;  3MJL A;  3THE A;  1ZPE A;  2EIV A;  1P8R A;  2ZAV A;  3LP7 A;  4GWC A;  1RLA A;  4MYL A;  4I06 A;  1WOI A;  1P8M A;  4IE2 A;  3GN0 A;  4IXU A;  4IU1 A;  4IU4 A;  4Q3V A;  1TBJ A;  4RHK A;  1HQF A;  4Q3Q A;  4GSM A;  3PZL A;  4Q3R A;  3E8Z A;  4RHL A;  2AEB A;  3KV2 A;  3CEV A;  4Q42 A;  1TBH A;  1P8P A;  1GQ6 A;  4HXQ A;  1T4R A;  3MFW A;  3SJT A;  3SL1 A;  1WVB A;  1D3V A;  4G3H A;  2EF5 A;  1HQX A;  2PLL A;  3NIQ A;  2RLA A;  4MYF A;  1T4S A;  4Q3T A;  1R1O A;  3RLA A;  1T4P A;  1T5G A;  1HQH A;  4MXR A;  1HQG A;  4IXV A;  4RLA A;  1PQ3 A;  4FCK A;  4Q3R C;  4MYK A;  3LHL A;  4ITY A;  4GSV A;  3DJ8 A;  1TBL A;  1WOH A;  3LP4 A;  5RLA A;  5HJA A;  4GWD A;  4HZE A;  3SL0 A;  4CEV A;  3MFV A;  3NIP A;  4RHQ A;  4IU5 A;  4DZ4 A;  3E9B A;  5HJ9 A;  4GSZ A;  3THJ A;  5CEV A;  1WVA A;  3NIO A;  1T5F A;  4RHI A;  4IE3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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