3TPYA

Crystal structure of m-pmv dutpase with a mixed population of substrate (dupnpp) and post-inversion product (dump) in the active sites
Total Genus 20
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
113
structure length
113
Chain Sequence
QKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE
publication title Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize In-line Attack and Inversion
rcsb
source organism Mason-pfizer monkey virus
total genus 20
structure length 113
sequence length 113
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2011-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 3tpyA01
1SM8A 2HXDA 3LQWA 1F7KA 2HXBA 3C3IA 2Y1TA 2D4NA 2BSYA 2HQUA 1VYQA 2OKBA 3ZF1A 3T64A 1XS4A 2YZJA 3LOJA 3TRNA 3TPYA 1PKKA 3ARAA 3CA9A 4OOPA 1SJNA 5EDDA 3C2TA 5F9KA 2WE3A 5CCTA 3HZAA 3T70A 1DUPA 2D4LA 3ZF5A 3H6XA 3TQ5A 2BT1A 3TS6A 3TSLA 3MDXA 3F4FA 3TPWA 1RNJA 2ZDCA 3T60A 1MQ7A 4XJCA 2WE0A 3TQ3A 4GV8A 2R9QA 2PC5A 1DUNA 1DUTA 2QLPA 3P48A 3TPNA 1OGHA 1DUCA 1F7OA 3T6YA 4DHKA 1F7DA 3TRLA 3TQ4A 4AOOA 2HRMA 2WE1A 1PKHA 1EU5A 2WE2A 3TQZA 2XCDA 1F7RA 4GCYA 5CCOA 2J4HA 4A6AA 3TP1A 1SYLA 1EUWA 3H6DA 1SLHA 3ZF2A 3ECYA 3ZF6A 3ZF0A 1SNFA 1RN8A 1XS6A 3SO2A 4AO5A 3EHWA 2D4MA 3KM3A 4WRKA 1PKJA 3TTAA 2J4QA 2XX6A 2XY3A 3ZF3A 2XCEA 1Q5UX 4LHRA 1SEHA 3MBQA 4B0HA 2OKDA 1SIXA 2OL0A 4AOZA 2PY4A 2OKEA 1XS1A 2V9XA 2OL1A 3ARNA 3ZF4A 1Q5HA 1F7PA 2Y8CA 4GK6A 4APZ1 3I93A 5ECTA 2QXXA 1DUDA 1F7QA 2BAZA 2HR6A 3HHQA 3TPSA 1SMCA 3ZEZA 4OOQA 1F7NA 3GF0A
chains in the Genus database with same CATH superfamily
1SM8A 2HXDA 3LQWA 1F7KA 2HXBA 3C3IA 2Y1TA 2D4NA 2BSYA 2HQUA 1VYQA 2OKBA 3ZF1A 3T64A 1XS4A 2YZJA 3LOJA 3TRNA 3TPYA 1PKKA 3ARAA 3CA9A 4OOPA 1SJNA 5EDDA 3C2TA 5F9KA 2WE3A 5CCTA 3HZAA 3T70A 1DUPA 2D4LA 3ZF5A 3H6XA 3TQ5A 2BT1A 3TS6A 3TSLA 3MDXA 3F4FA 1TULA 1RNJA 2ZDCA 3T60A 3TPWA 1MQ7A 4XJCA 2WE0A 3TQ3A 4GV8A 2R9QA 2PC5A 1DUNA 1DUTA 2QLPA 3P48A 3TPNA 1OGHA 1DUCA 1F7OA 3T6YA 4DHKA 1F7DA 3TRLA 3TQ4A 4AOOA 2HRMA 2WE1A 1PKHA 1EU5A 2WE2A 3TQZA 2XCDA 1F7RA 4GCYA 5CCOA 2J4HA 4A6AA 3TP1A 1SYLA 1EUWA 3H6DA 1SLHA 3ZF2A 3ECYA 3ZF6A 3ZF0A 1SNFA 1RN8A 1XS6A 3SO2A 4AO5A 3EHWA 2D4MA 3KM3A 4WRKA 1PKJA 3TTAA 2J4QA 2XX6A 2XY3A 3ZF3A 2XCEA 1Q5UX 4LHRA 1SEHA 3MBQA 4B0HA 2OKDA 1SIXA 2OL0A 4AOZA 2PY4A 2OKEA 1XS1A 2V9XA 2OL1A 3ARNA 3ZF4A 1Q5HA 1F7PA 2Y8CA 4GK6A 4APZ1 3I93A 5ECTA 2QXXA 1DUDA 1F7QA 2BAZA 2HR6A 3HHQA 3TPSA 1SMCA 3ZEZA 4OOQA 1F7NA 3GF0A
chains in the Genus database with same CATH topology
1SM8A 2HXDA 3LQWA 1F7KA 2HXBA 3C3IA 2Y1TA 2D4NA 2BSYA 2HQUA 1VYQA 2OKBA 3ZF1A 3T64A 1XS4A 2YZJA 3LOJA 3TRNA 3TPYA 1PKKA 3ARAA 3CA9A 4OOPA 1SJNA 5EDDA 3C2TA 5F9KA 2WE3A 5CCTA 3HZAA 3T70A 1DUPA 2D4LA 3ZF5A 3H6XA 3TQ5A 2BT1A 3TS6A 3TSLA 3MDXA 3F4FA 3TPWA 1RNJA 2ZDCA 3T60A 1MQ7A 4XJCA 2WE0A 3TQ3A 4GV8A 2R9QA 2PC5A 1DUNA 1DUTA 2QLPA 3P48A 3TPNA 1OGHA 1DUCA 1F7OA 3T6YA 4DHKA 1F7DA 3TRLA 3TQ4A 4AOOA 2HRMA 2WE1A 1PKHA 1EU5A 2WE2A 3TQZA 2XCDA 1F7RA 4GCYA 5CCOA 2J4HA 4A6AA 3TP1A 1SYLA 1EUWA 3H6DA 1SLHA 3ZF2A 3ECYA 3ZF6A 3ZF0A 1SNFA 1RN8A 1XS6A 3SO2A 4AO5A 3EHWA 2D4MA 3KM3A 4WRKA 1PKJA 3TTAA 2J4QA 2XX6A 2XY3A 3ZF3A 2XCEA 1Q5UX 4LHRA 1SEHA 3MBQA 4B0HA 2OKDA 1SIXA 2OL0A 4AOZA 2PY4A 2OKEA 1XS1A 2V9XA 2OL1A 3ARNA 3ZF4A 1Q5HA 1F7PA 2Y8CA 4GK6A 4APZ1 3I93A 5ECTA 2QXXA 1DUDA 1F7QA 2BAZA 2HR6A 3HHQA 3TPSA 1SMCA 3ZEZA 4OOQA 1F7NA 3GF0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SM8 A;  2HXD A;  3LQW A;  1F7K A;  2HXB A;  3C3I A;  2Y1T A;  2D4N A;  2BSY A;  2HQU A;  1VYQ A;  2OKB A;  3ZF1 A;  3T64 A;  1XS4 A;  2YZJ A;  3LOJ A;  3TRN A;  3TPY A;  1PKK A;  3ARA A;  3CA9 A;  4OOP A;  1SJN A;  5EDD A;  3C2T A;  5F9K A;  2WE3 A;  5CCT A;  3HZA A;  3T70 A;  1DUP A;  2D4L A;  3ZF5 A;  3H6X A;  3TQ5 A;  2BT1 A;  3TS6 A;  3TSL A;  3MDX A;  3F4F A;  3TPW A;  1RNJ A;  2ZDC A;  3T60 A;  1MQ7 A;  4XJC A;  2WE0 A;  3TQ3 A;  4GV8 A;  2R9Q A;  2PC5 A;  1DUN A;  1DUT A;  2QLP A;  3P48 A;  3TPN A;  1OGH A;  1DUC A;  1F7O A;  3T6Y A;  4DHK A;  1F7D A;  3TRL A;  3TQ4 A;  4AOO A;  2HRM A;  2WE1 A;  1PKH A;  1EU5 A;  2WE2 A;  3TQZ A;  2XCD A;  1F7R A;  4GCY A;  5CCO A;  2J4H A;  4A6A A;  3TP1 A;  1SYL A;  1EUW A;  3H6D A;  1SLH A;  3ZF2 A;  3ECY A;  3ZF6 A;  3ZF0 A;  1SNF A;  1RN8 A;  1XS6 A;  3SO2 A;  4AO5 A;  3EHW A;  2D4M A;  3KM3 A;  4WRK A;  1PKJ A;  3TTA A;  2J4Q A;  2XX6 A;  2XY3 A;  3ZF3 A;  2XCE A;  1Q5U X;  4LHR A;  1SEH A;  3MBQ A;  4B0H A;  2OKD A;  1SIX A;  2OL0 A;  4AOZ A;  2PY4 A;  2OKE A;  1XS1 A;  2V9X A;  2OL1 A;  3ARN A;  3ZF4 A;  1Q5H A;  1F7P A;  2Y8C A;  4GK6 A;  4APZ 1;  3I93 A;  5ECT A;  2QXX A;  1DUD A;  1F7Q A;  2BAZ A;  2HR6 A;  3HHQ A;  3TPS A;  1SMC A;  3ZEZ A;  4OOQ A;  1F7N A;  3GF0 A; 
#chains in the Genus database with same CATH topology
 1SM8 A;  2HXD A;  3LQW A;  1F7K A;  2HXB A;  3C3I A;  2Y1T A;  2D4N A;  2BSY A;  2HQU A;  1VYQ A;  2OKB A;  3ZF1 A;  3T64 A;  1XS4 A;  2YZJ A;  3LOJ A;  3TRN A;  3TPY A;  1PKK A;  3ARA A;  3CA9 A;  4OOP A;  1SJN A;  5EDD A;  3C2T A;  5F9K A;  2WE3 A;  5CCT A;  3HZA A;  3T70 A;  1DUP A;  2D4L A;  3ZF5 A;  3H6X A;  3TQ5 A;  2BT1 A;  3TS6 A;  3TSL A;  3MDX A;  3F4F A;  1TUL A;  1RNJ A;  2ZDC A;  3T60 A;  3TPW A;  1MQ7 A;  4XJC A;  2WE0 A;  3TQ3 A;  4GV8 A;  2R9Q A;  2PC5 A;  1DUN A;  1DUT A;  2QLP A;  3P48 A;  3TPN A;  1OGH A;  1DUC A;  1F7O A;  3T6Y A;  4DHK A;  1F7D A;  3TRL A;  3TQ4 A;  4AOO A;  2HRM A;  2WE1 A;  1PKH A;  1EU5 A;  2WE2 A;  3TQZ A;  2XCD A;  1F7R A;  4GCY A;  5CCO A;  2J4H A;  4A6A A;  3TP1 A;  1SYL A;  1EUW A;  3H6D A;  1SLH A;  3ZF2 A;  3ECY A;  3ZF6 A;  3ZF0 A;  1SNF A;  1RN8 A;  1XS6 A;  3SO2 A;  4AO5 A;  3EHW A;  2D4M A;  3KM3 A;  4WRK A;  1PKJ A;  3TTA A;  2J4Q A;  2XX6 A;  2XY3 A;  3ZF3 A;  2XCE A;  1Q5U X;  4LHR A;  1SEH A;  3MBQ A;  4B0H A;  2OKD A;  1SIX A;  2OL0 A;  4AOZ A;  2PY4 A;  2OKE A;  1XS1 A;  2V9X A;  2OL1 A;  3ARN A;  3ZF4 A;  1Q5H A;  1F7P A;  2Y8C A;  4GK6 A;  4APZ 1;  3I93 A;  5ECT A;  2QXX A;  1DUD A;  1F7Q A;  2BAZ A;  2HR6 A;  3HHQ A;  3TPS A;  1SMC A;  3ZEZ A;  4OOQ A;  1F7N A;  3GF0 A; 
#chains in the Genus database with same CATH homology
 1SM8 A;  2HXD A;  3LQW A;  1F7K A;  2HXB A;  3C3I A;  2Y1T A;  2D4N A;  2BSY A;  2HQU A;  1VYQ A;  2OKB A;  3ZF1 A;  3T64 A;  1XS4 A;  2YZJ A;  3LOJ A;  3TRN A;  3TPY A;  1PKK A;  3ARA A;  3CA9 A;  4OOP A;  1SJN A;  5EDD A;  3C2T A;  5F9K A;  2WE3 A;  5CCT A;  3HZA A;  3T70 A;  1DUP A;  2D4L A;  3ZF5 A;  3H6X A;  3TQ5 A;  2BT1 A;  3TS6 A;  3TSL A;  3MDX A;  3F4F A;  3TPW A;  1RNJ A;  2ZDC A;  3T60 A;  1MQ7 A;  4XJC A;  2WE0 A;  3TQ3 A;  4GV8 A;  2R9Q A;  2PC5 A;  1DUN A;  1DUT A;  2QLP A;  3P48 A;  3TPN A;  1OGH A;  1DUC A;  1F7O A;  3T6Y A;  4DHK A;  1F7D A;  3TRL A;  3TQ4 A;  4AOO A;  2HRM A;  2WE1 A;  1PKH A;  1EU5 A;  2WE2 A;  3TQZ A;  2XCD A;  1F7R A;  4GCY A;  5CCO A;  2J4H A;  4A6A A;  3TP1 A;  1SYL A;  1EUW A;  3H6D A;  1SLH A;  3ZF2 A;  3ECY A;  3ZF6 A;  3ZF0 A;  1SNF A;  1RN8 A;  1XS6 A;  3SO2 A;  4AO5 A;  3EHW A;  2D4M A;  3KM3 A;  4WRK A;  1PKJ A;  3TTA A;  2J4Q A;  2XX6 A;  2XY3 A;  3ZF3 A;  2XCE A;  1Q5U X;  4LHR A;  1SEH A;  3MBQ A;  4B0H A;  2OKD A;  1SIX A;  2OL0 A;  4AOZ A;  2PY4 A;  2OKE A;  1XS1 A;  2V9X A;  2OL1 A;  3ARN A;  3ZF4 A;  1Q5H A;  1F7P A;  2Y8C A;  4GK6 A;  4APZ 1;  3I93 A;  5ECT A;  2QXX A;  1DUD A;  1F7Q A;  2BAZ A;  2HR6 A;  3HHQ A;  3TPS A;  1SMC A;  3ZEZ A;  4OOQ A;  1F7N A;  3GF0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...