3TQ3A

Crystal structure of m-pmv dutpase with a mixed population of substrate (dupnpp) and post-inversion product (dump) in the active sites
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
113
structure length
113
Chain Sequence
KQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE
publication title Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize In-line Attack and Inversion
rcsb
source organism Mason-pfizer monkey virus
total genus 20
structure length 113
sequence length 113
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2011-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 3tq3A01
3ZF1A 1DUDA 1F7DA 2HQUA 4WRKA 4DHKA 1SIXA 2WE3A 1XS4A 1F7OA 3ZF3A 2QXXA 1PKJA 3TTAA 3TQ5A 1SMCA 2HRMA 2D4NA 2Y1TA 2WE1A 3ZEZA 4GV8A 1F7QA 2HXBA 2XX6A 3MDXA 1XS6A 1SM8A 3HZAA 3HHQA 3P48A 2WE2A 1SNFA 3TPNA 2J4HA 2R9QA 3KM3A 5CCOA 1SJNA 3F4FA 3I93A 2J4QA 2HR6A 1SLHA 2OL1A 5EDDA 2BSYA 3LOJA 1MQ7A 1DUTA 3ECYA 2D4MA 3ZF4A 1SEHA 2WE0A 5F9KA 1Q5HA 3ARAA 4APZ1 1SYLA 5ECTA 2XCEA 1F7PA 3SO2A 2QLPA 3ZF2A 3CA9A 4AO5A 3TSLA 3ZF6A 3T6YA 4A6AA 1Q5UX 3TRNA 4LHRA 2ZDCA 2YZJA 2PY4A 1VYQA 3H6DA 2OKDA 2V9XA 3EHWA 3T70A 4GK6A 1PKHA 2OKBA 1XS1A 2XCDA 3TS6A 1RNJA 4OOPA 3TPWA 1DUNA 3C3IA 1F7NA 2BAZA 3GF0A 2Y8CA 3TP1A 3TPYA 3TQZA 3TPSA 4B0HA 1RN8A 3TQ3A 3MBQA 4OOQA 3LQWA 3T60A 4AOZA 1PKKA 3TQ4A 1F7RA 3H6XA 1EU5A 2OL0A 1EUWA 1F7KA 2OKEA 5CCTA 4GCYA 1DUPA 3T64A 2XY3A 3ZF0A 2HXDA 3TRLA 3C2TA 2BT1A 4XJCA 3ZF5A 1OGHA 2PC5A 1DUCA 3ARNA 4AOOA 2D4LA
chains in the Genus database with same CATH superfamily
3ZF1A 1DUDA 1F7DA 2HQUA 4WRKA 4DHKA 1SIXA 2WE3A 1XS4A 1F7OA 3ZF3A 2QXXA 1PKJA 3TTAA 3TQ5A 1SMCA 2HRMA 2D4NA 2Y1TA 2WE1A 3ZEZA 4GV8A 1F7QA 2HXBA 2XX6A 3MDXA 1XS6A 1SM8A 3HZAA 3HHQA 3P48A 2WE2A 1SNFA 3TPNA 2J4HA 2R9QA 3KM3A 5CCOA 1SJNA 3F4FA 3I93A 2J4QA 2HR6A 1SLHA 2OL1A 5EDDA 2BSYA 3LOJA 1MQ7A 1DUTA 3ECYA 2D4MA 3ZF4A 1SEHA 2WE0A 5F9KA 1Q5HA 3ARAA 4APZ1 1SYLA 5ECTA 2XCEA 1F7PA 3SO2A 2QLPA 3ZF2A 3CA9A 4AO5A 3TSLA 3ZF6A 3T6YA 4A6AA 1Q5UX 3TRNA 4LHRA 2ZDCA 2YZJA 2PY4A 1VYQA 3H6DA 2OKDA 2V9XA 3EHWA 3T70A 4GK6A 1PKHA 2OKBA 1XS1A 2XCDA 3TS6A 1RNJA 4OOPA 3TPWA 1DUNA 3C3IA 1F7NA 2BAZA 3GF0A 2Y8CA 3TP1A 3TPYA 3TQZA 3TPSA 4B0HA 1RN8A 3TQ3A 3MBQA 4OOQA 3LQWA 3T60A 4AOZA 1PKKA 3TQ4A 1F7RA 3H6XA 1EU5A 2OL0A 1EUWA 1F7KA 2OKEA 5CCTA 4GCYA 1DUPA 3T64A 1TULA 2XY3A 3ZF0A 2HXDA 3TRLA 3C2TA 2BT1A 4XJCA 3ZF5A 1OGHA 2PC5A 1DUCA 3ARNA 4AOOA 2D4LA
chains in the Genus database with same CATH topology
3ZF1A 1DUDA 1F7DA 2HQUA 4WRKA 4DHKA 1SIXA 2WE3A 1XS4A 1F7OA 3ZF3A 2QXXA 1PKJA 3TTAA 3TQ5A 1SMCA 2HRMA 2D4NA 2Y1TA 2WE1A 3ZEZA 4GV8A 1F7QA 2HXBA 2XX6A 3MDXA 1XS6A 1SM8A 3HZAA 3HHQA 3P48A 2WE2A 1SNFA 3TPNA 2J4HA 2R9QA 3KM3A 5CCOA 1SJNA 3F4FA 3I93A 2J4QA 2HR6A 1SLHA 2OL1A 5EDDA 2BSYA 3LOJA 1MQ7A 1DUTA 3ECYA 2D4MA 3ZF4A 1SEHA 2WE0A 5F9KA 1Q5HA 3ARAA 4APZ1 1SYLA 5ECTA 2XCEA 1F7PA 3SO2A 2QLPA 3ZF2A 3CA9A 4AO5A 3TSLA 3ZF6A 3T6YA 4A6AA 1Q5UX 3TRNA 4LHRA 2ZDCA 2YZJA 2PY4A 1VYQA 3H6DA 2OKDA 2V9XA 3EHWA 3T70A 4GK6A 1PKHA 2OKBA 1XS1A 2XCDA 3TS6A 1RNJA 4OOPA 3TPWA 1DUNA 3C3IA 1F7NA 2BAZA 3GF0A 2Y8CA 3TP1A 3TPYA 3TQZA 3TPSA 4B0HA 1RN8A 3TQ3A 3MBQA 4OOQA 3LQWA 3T60A 4AOZA 1PKKA 3TQ4A 1F7RA 3H6XA 1EU5A 2OL0A 1EUWA 1F7KA 2OKEA 5CCTA 4GCYA 1DUPA 3T64A 2XY3A 3ZF0A 2HXDA 3TRLA 3C2TA 2BT1A 4XJCA 3ZF5A 1OGHA 2PC5A 1DUCA 3ARNA 4AOOA 2D4LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZF1 A;  1DUD A;  1F7D A;  2HQU A;  4WRK A;  4DHK A;  1SIX A;  2WE3 A;  1XS4 A;  1F7O A;  3ZF3 A;  2QXX A;  1PKJ A;  3TTA A;  3TQ5 A;  1SMC A;  2HRM A;  2D4N A;  2Y1T A;  2WE1 A;  3ZEZ A;  4GV8 A;  1F7Q A;  2HXB A;  2XX6 A;  3MDX A;  1XS6 A;  1SM8 A;  3HZA A;  3HHQ A;  3P48 A;  2WE2 A;  1SNF A;  3TPN A;  2J4H A;  2R9Q A;  3KM3 A;  5CCO A;  1SJN A;  3F4F A;  3I93 A;  2J4Q A;  2HR6 A;  1SLH A;  2OL1 A;  5EDD A;  2BSY A;  3LOJ A;  1MQ7 A;  1DUT A;  3ECY A;  2D4M A;  3ZF4 A;  1SEH A;  2WE0 A;  5F9K A;  1Q5H A;  3ARA A;  4APZ 1;  1SYL A;  5ECT A;  2XCE A;  1F7P A;  3SO2 A;  2QLP A;  3ZF2 A;  3CA9 A;  4AO5 A;  3TSL A;  3ZF6 A;  3T6Y A;  4A6A A;  1Q5U X;  3TRN A;  4LHR A;  2ZDC A;  2YZJ A;  2PY4 A;  1VYQ A;  3H6D A;  2OKD A;  2V9X A;  3EHW A;  3T70 A;  4GK6 A;  1PKH A;  2OKB A;  1XS1 A;  2XCD A;  3TS6 A;  1RNJ A;  4OOP A;  3TPW A;  1DUN A;  3C3I A;  1F7N A;  2BAZ A;  3GF0 A;  2Y8C A;  3TP1 A;  3TPY A;  3TQZ A;  3TPS A;  4B0H A;  1RN8 A;  3TQ3 A;  3MBQ A;  4OOQ A;  3LQW A;  3T60 A;  4AOZ A;  1PKK A;  3TQ4 A;  1F7R A;  3H6X A;  1EU5 A;  2OL0 A;  1EUW A;  1F7K A;  2OKE A;  5CCT A;  4GCY A;  1DUP A;  3T64 A;  2XY3 A;  3ZF0 A;  2HXD A;  3TRL A;  3C2T A;  2BT1 A;  4XJC A;  3ZF5 A;  1OGH A;  2PC5 A;  1DUC A;  3ARN A;  4AOO A;  2D4L A; 
#chains in the Genus database with same CATH topology
 3ZF1 A;  1DUD A;  1F7D A;  2HQU A;  4WRK A;  4DHK A;  1SIX A;  2WE3 A;  1XS4 A;  1F7O A;  3ZF3 A;  2QXX A;  1PKJ A;  3TTA A;  3TQ5 A;  1SMC A;  2HRM A;  2D4N A;  2Y1T A;  2WE1 A;  3ZEZ A;  4GV8 A;  1F7Q A;  2HXB A;  2XX6 A;  3MDX A;  1XS6 A;  1SM8 A;  3HZA A;  3HHQ A;  3P48 A;  2WE2 A;  1SNF A;  3TPN A;  2J4H A;  2R9Q A;  3KM3 A;  5CCO A;  1SJN A;  3F4F A;  3I93 A;  2J4Q A;  2HR6 A;  1SLH A;  2OL1 A;  5EDD A;  2BSY A;  3LOJ A;  1MQ7 A;  1DUT A;  3ECY A;  2D4M A;  3ZF4 A;  1SEH A;  2WE0 A;  5F9K A;  1Q5H A;  3ARA A;  4APZ 1;  1SYL A;  5ECT A;  2XCE A;  1F7P A;  3SO2 A;  2QLP A;  3ZF2 A;  3CA9 A;  4AO5 A;  3TSL A;  3ZF6 A;  3T6Y A;  4A6A A;  1Q5U X;  3TRN A;  4LHR A;  2ZDC A;  2YZJ A;  2PY4 A;  1VYQ A;  3H6D A;  2OKD A;  2V9X A;  3EHW A;  3T70 A;  4GK6 A;  1PKH A;  2OKB A;  1XS1 A;  2XCD A;  3TS6 A;  1RNJ A;  4OOP A;  3TPW A;  1DUN A;  3C3I A;  1F7N A;  2BAZ A;  3GF0 A;  2Y8C A;  3TP1 A;  3TPY A;  3TQZ A;  3TPS A;  4B0H A;  1RN8 A;  3TQ3 A;  3MBQ A;  4OOQ A;  3LQW A;  3T60 A;  4AOZ A;  1PKK A;  3TQ4 A;  1F7R A;  3H6X A;  1EU5 A;  2OL0 A;  1EUW A;  1F7K A;  2OKE A;  5CCT A;  4GCY A;  1DUP A;  3T64 A;  1TUL A;  2XY3 A;  3ZF0 A;  2HXD A;  3TRL A;  3C2T A;  2BT1 A;  4XJC A;  3ZF5 A;  1OGH A;  2PC5 A;  1DUC A;  3ARN A;  4AOO A;  2D4L A; 
#chains in the Genus database with same CATH homology
 3ZF1 A;  1DUD A;  1F7D A;  2HQU A;  4WRK A;  4DHK A;  1SIX A;  2WE3 A;  1XS4 A;  1F7O A;  3ZF3 A;  2QXX A;  1PKJ A;  3TTA A;  3TQ5 A;  1SMC A;  2HRM A;  2D4N A;  2Y1T A;  2WE1 A;  3ZEZ A;  4GV8 A;  1F7Q A;  2HXB A;  2XX6 A;  3MDX A;  1XS6 A;  1SM8 A;  3HZA A;  3HHQ A;  3P48 A;  2WE2 A;  1SNF A;  3TPN A;  2J4H A;  2R9Q A;  3KM3 A;  5CCO A;  1SJN A;  3F4F A;  3I93 A;  2J4Q A;  2HR6 A;  1SLH A;  2OL1 A;  5EDD A;  2BSY A;  3LOJ A;  1MQ7 A;  1DUT A;  3ECY A;  2D4M A;  3ZF4 A;  1SEH A;  2WE0 A;  5F9K A;  1Q5H A;  3ARA A;  4APZ 1;  1SYL A;  5ECT A;  2XCE A;  1F7P A;  3SO2 A;  2QLP A;  3ZF2 A;  3CA9 A;  4AO5 A;  3TSL A;  3ZF6 A;  3T6Y A;  4A6A A;  1Q5U X;  3TRN A;  4LHR A;  2ZDC A;  2YZJ A;  2PY4 A;  1VYQ A;  3H6D A;  2OKD A;  2V9X A;  3EHW A;  3T70 A;  4GK6 A;  1PKH A;  2OKB A;  1XS1 A;  2XCD A;  3TS6 A;  1RNJ A;  4OOP A;  3TPW A;  1DUN A;  3C3I A;  1F7N A;  2BAZ A;  3GF0 A;  2Y8C A;  3TP1 A;  3TPY A;  3TQZ A;  3TPS A;  4B0H A;  1RN8 A;  3TQ3 A;  3MBQ A;  4OOQ A;  3LQW A;  3T60 A;  4AOZ A;  1PKK A;  3TQ4 A;  1F7R A;  3H6X A;  1EU5 A;  2OL0 A;  1EUW A;  1F7K A;  2OKE A;  5CCT A;  4GCY A;  1DUP A;  3T64 A;  2XY3 A;  3ZF0 A;  2HXD A;  3TRL A;  3C2T A;  2BT1 A;  4XJC A;  3ZF5 A;  1OGH A;  2PC5 A;  1DUC A;  3ARN A;  4AOO A;  2D4L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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