3TQ4A

Crystal structure of m-pmv dutpase with a mixed population of substrate (dupnpp) and post-inversion product (dump) in the active sites
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
112
structure length
112
Chain Sequence
KQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE
publication title Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize In-line Attack and Inversion
rcsb
source organism Mason-pfizer monkey virus
total genus 20
structure length 112
sequence length 112
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2011-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 3tq4A01
3TQ3A 3MDXA 1XS6A 2HXDA 3HHQA 5ECTA 3T64A 2XY3A 4B0HA 3TTAA 2QLPA 1OGHA 3TP1A 3MBQA 1Q5HA 4GV8A 1EU5A 3TQ5A 1EUWA 1VYQA 3TPWA 3TRNA 3TQZA 2HQUA 5F9KA 1SLHA 1DUTA 1PKKA 1F7OA 2OKBA 2OL0A 1MQ7A 2XCDA 3ARAA 3TQ4A 1SM8A 3ZF5A 2OL1A 2XX6A 3TRLA 3TPSA 3LOJA 4OOPA 3H6DA 3TS6A 2BSYA 4XJCA 2PY4A 1F7PA 2WE1A 2OKEA 2J4HA 2R9QA 1DUNA 3ARNA 1SJNA 3P48A 4GCYA 2Y1TA 3TPYA 3TSLA 2BAZA 1XS4A 2HXBA 3F4FA 3ZEZA 3ZF0A 2J4QA 3I93A 3T60A 2ZDCA 4A6AA 3ECYA 2D4LA 2WE2A 2QXXA 1RNJA 1F7NA 3EHWA 3ZF1A 4AOZA 1SNFA 3GF0A 3SO2A 4DHKA 2V9XA 3H6XA 3T70A 1SIXA 2D4NA 3ZF4A 1F7QA 2HR6A 1DUCA 2XCEA 2Y8CA 4APZ1 4LHRA 1F7RA 3TPNA 2D4MA 3T6YA 2YZJA 2WE0A 1Q5UX 3ZF6A 2BT1A 1SEHA 3LQWA 4WRKA 1SMCA 2PC5A 1XS1A 3C3IA 2WE3A 4GK6A 1PKJA 4AO5A 3HZAA 1RN8A 4OOQA 1F7DA 2HRMA 1DUDA 1DUPA 3ZF3A 3KM3A 5EDDA 2OKDA 1PKHA 5CCOA 1SYLA 3C2TA 5CCTA 3ZF2A 1F7KA 3CA9A 4AOOA
chains in the Genus database with same CATH superfamily
3TQ3A 3MDXA 1XS6A 2HXDA 3HHQA 5ECTA 3T64A 2XY3A 4B0HA 3TTAA 2QLPA 1OGHA 3TP1A 3MBQA 1Q5HA 4GV8A 1EU5A 3TQ5A 1EUWA 1VYQA 3TPWA 3TRNA 3TQZA 2HQUA 5F9KA 1SLHA 1DUTA 1PKKA 1F7OA 2OKBA 2OL0A 1MQ7A 2XCDA 3ARAA 3TQ4A 1SM8A 3ZF5A 2OL1A 2XX6A 3TRLA 3TPSA 3LOJA 4OOPA 3H6DA 3TS6A 2BSYA 4XJCA 2PY4A 1F7PA 2WE1A 2OKEA 2J4HA 2R9QA 1DUNA 3ARNA 1SJNA 3P48A 4GCYA 2Y1TA 3TPYA 3TSLA 2BAZA 1XS4A 2HXBA 3F4FA 3ZEZA 3ZF0A 2J4QA 3I93A 3T60A 2ZDCA 1TULA 4A6AA 3ECYA 2D4LA 2WE2A 2QXXA 1RNJA 1F7NA 3EHWA 3ZF1A 4AOZA 1SNFA 3GF0A 3SO2A 4DHKA 2V9XA 3H6XA 3T70A 1SIXA 2D4NA 3ZF4A 1F7QA 2HR6A 1DUCA 2XCEA 2Y8CA 4APZ1 4LHRA 1F7RA 3TPNA 2D4MA 3T6YA 2YZJA 2WE0A 1Q5UX 3ZF6A 2BT1A 1SEHA 3LQWA 4WRKA 1SMCA 2PC5A 1XS1A 3C3IA 2WE3A 4GK6A 1PKJA 4AO5A 3HZAA 1RN8A 4OOQA 1F7DA 2HRMA 1DUDA 1DUPA 3ZF3A 3KM3A 5EDDA 2OKDA 1PKHA 5CCOA 1SYLA 3C2TA 5CCTA 3ZF2A 1F7KA 3CA9A 4AOOA
chains in the Genus database with same CATH topology
3TQ3A 3MDXA 1XS6A 2HXDA 3HHQA 5ECTA 3T64A 2XY3A 4B0HA 3TTAA 2QLPA 1OGHA 3TP1A 3MBQA 1Q5HA 4GV8A 1EU5A 3TQ5A 1EUWA 1VYQA 3TPWA 3TRNA 3TQZA 2HQUA 5F9KA 1SLHA 1DUTA 1PKKA 1F7OA 2OKBA 2OL0A 1MQ7A 2XCDA 3ARAA 3TQ4A 1SM8A 3ZF5A 2OL1A 2XX6A 3TRLA 3TPSA 3LOJA 4OOPA 3H6DA 3TS6A 2BSYA 4XJCA 2PY4A 1F7PA 2WE1A 2OKEA 2J4HA 2R9QA 1DUNA 3ARNA 1SJNA 3P48A 4GCYA 2Y1TA 3TPYA 3TSLA 2BAZA 1XS4A 2HXBA 3F4FA 3ZEZA 3ZF0A 2J4QA 3I93A 3T60A 2ZDCA 4A6AA 3ECYA 2D4LA 2WE2A 2QXXA 1RNJA 1F7NA 3EHWA 3ZF1A 4AOZA 1SNFA 3GF0A 3SO2A 4DHKA 2V9XA 3H6XA 3T70A 1SIXA 2D4NA 3ZF4A 1F7QA 2HR6A 1DUCA 2XCEA 2Y8CA 4APZ1 4LHRA 1F7RA 3TPNA 2D4MA 3T6YA 2YZJA 2WE0A 1Q5UX 3ZF6A 2BT1A 1SEHA 3LQWA 4WRKA 1SMCA 2PC5A 1XS1A 3C3IA 2WE3A 4GK6A 1PKJA 4AO5A 3HZAA 1RN8A 4OOQA 1F7DA 2HRMA 1DUDA 1DUPA 3ZF3A 3KM3A 5EDDA 2OKDA 1PKHA 5CCOA 1SYLA 3C2TA 5CCTA 3ZF2A 1F7KA 3CA9A 4AOOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TQ3 A;  3MDX A;  1XS6 A;  2HXD A;  3HHQ A;  5ECT A;  3T64 A;  2XY3 A;  4B0H A;  3TTA A;  2QLP A;  1OGH A;  3TP1 A;  3MBQ A;  1Q5H A;  4GV8 A;  1EU5 A;  3TQ5 A;  1EUW A;  1VYQ A;  3TPW A;  3TRN A;  3TQZ A;  2HQU A;  5F9K A;  1SLH A;  1DUT A;  1PKK A;  1F7O A;  2OKB A;  2OL0 A;  1MQ7 A;  2XCD A;  3ARA A;  3TQ4 A;  1SM8 A;  3ZF5 A;  2OL1 A;  2XX6 A;  3TRL A;  3TPS A;  3LOJ A;  4OOP A;  3H6D A;  3TS6 A;  2BSY A;  4XJC A;  2PY4 A;  1F7P A;  2WE1 A;  2OKE A;  2J4H A;  2R9Q A;  1DUN A;  3ARN A;  1SJN A;  3P48 A;  4GCY A;  2Y1T A;  3TPY A;  3TSL A;  2BAZ A;  1XS4 A;  2HXB A;  3F4F A;  3ZEZ A;  3ZF0 A;  2J4Q A;  3I93 A;  3T60 A;  2ZDC A;  4A6A A;  3ECY A;  2D4L A;  2WE2 A;  2QXX A;  1RNJ A;  1F7N A;  3EHW A;  3ZF1 A;  4AOZ A;  1SNF A;  3GF0 A;  3SO2 A;  4DHK A;  2V9X A;  3H6X A;  3T70 A;  1SIX A;  2D4N A;  3ZF4 A;  1F7Q A;  2HR6 A;  1DUC A;  2XCE A;  2Y8C A;  4APZ 1;  4LHR A;  1F7R A;  3TPN A;  2D4M A;  3T6Y A;  2YZJ A;  2WE0 A;  1Q5U X;  3ZF6 A;  2BT1 A;  1SEH A;  3LQW A;  4WRK A;  1SMC A;  2PC5 A;  1XS1 A;  3C3I A;  2WE3 A;  4GK6 A;  1PKJ A;  4AO5 A;  3HZA A;  1RN8 A;  4OOQ A;  1F7D A;  2HRM A;  1DUD A;  1DUP A;  3ZF3 A;  3KM3 A;  5EDD A;  2OKD A;  1PKH A;  5CCO A;  1SYL A;  3C2T A;  5CCT A;  3ZF2 A;  1F7K A;  3CA9 A;  4AOO A; 
#chains in the Genus database with same CATH topology
 3TQ3 A;  3MDX A;  1XS6 A;  2HXD A;  3HHQ A;  5ECT A;  3T64 A;  2XY3 A;  4B0H A;  3TTA A;  2QLP A;  1OGH A;  3TP1 A;  3MBQ A;  1Q5H A;  4GV8 A;  1EU5 A;  3TQ5 A;  1EUW A;  1VYQ A;  3TPW A;  3TRN A;  3TQZ A;  2HQU A;  5F9K A;  1SLH A;  1DUT A;  1PKK A;  1F7O A;  2OKB A;  2OL0 A;  1MQ7 A;  2XCD A;  3ARA A;  3TQ4 A;  1SM8 A;  3ZF5 A;  2OL1 A;  2XX6 A;  3TRL A;  3TPS A;  3LOJ A;  4OOP A;  3H6D A;  3TS6 A;  2BSY A;  4XJC A;  2PY4 A;  1F7P A;  2WE1 A;  2OKE A;  2J4H A;  2R9Q A;  1DUN A;  3ARN A;  1SJN A;  3P48 A;  4GCY A;  2Y1T A;  3TPY A;  3TSL A;  2BAZ A;  1XS4 A;  2HXB A;  3F4F A;  3ZEZ A;  3ZF0 A;  2J4Q A;  3I93 A;  3T60 A;  2ZDC A;  1TUL A;  4A6A A;  3ECY A;  2D4L A;  2WE2 A;  2QXX A;  1RNJ A;  1F7N A;  3EHW A;  3ZF1 A;  4AOZ A;  1SNF A;  3GF0 A;  3SO2 A;  4DHK A;  2V9X A;  3H6X A;  3T70 A;  1SIX A;  2D4N A;  3ZF4 A;  1F7Q A;  2HR6 A;  1DUC A;  2XCE A;  2Y8C A;  4APZ 1;  4LHR A;  1F7R A;  3TPN A;  2D4M A;  3T6Y A;  2YZJ A;  2WE0 A;  1Q5U X;  3ZF6 A;  2BT1 A;  1SEH A;  3LQW A;  4WRK A;  1SMC A;  2PC5 A;  1XS1 A;  3C3I A;  2WE3 A;  4GK6 A;  1PKJ A;  4AO5 A;  3HZA A;  1RN8 A;  4OOQ A;  1F7D A;  2HRM A;  1DUD A;  1DUP A;  3ZF3 A;  3KM3 A;  5EDD A;  2OKD A;  1PKH A;  5CCO A;  1SYL A;  3C2T A;  5CCT A;  3ZF2 A;  1F7K A;  3CA9 A;  4AOO A; 
#chains in the Genus database with same CATH homology
 3TQ3 A;  3MDX A;  1XS6 A;  2HXD A;  3HHQ A;  5ECT A;  3T64 A;  2XY3 A;  4B0H A;  3TTA A;  2QLP A;  1OGH A;  3TP1 A;  3MBQ A;  1Q5H A;  4GV8 A;  1EU5 A;  3TQ5 A;  1EUW A;  1VYQ A;  3TPW A;  3TRN A;  3TQZ A;  2HQU A;  5F9K A;  1SLH A;  1DUT A;  1PKK A;  1F7O A;  2OKB A;  2OL0 A;  1MQ7 A;  2XCD A;  3ARA A;  3TQ4 A;  1SM8 A;  3ZF5 A;  2OL1 A;  2XX6 A;  3TRL A;  3TPS A;  3LOJ A;  4OOP A;  3H6D A;  3TS6 A;  2BSY A;  4XJC A;  2PY4 A;  1F7P A;  2WE1 A;  2OKE A;  2J4H A;  2R9Q A;  1DUN A;  3ARN A;  1SJN A;  3P48 A;  4GCY A;  2Y1T A;  3TPY A;  3TSL A;  2BAZ A;  1XS4 A;  2HXB A;  3F4F A;  3ZEZ A;  3ZF0 A;  2J4Q A;  3I93 A;  3T60 A;  2ZDC A;  4A6A A;  3ECY A;  2D4L A;  2WE2 A;  2QXX A;  1RNJ A;  1F7N A;  3EHW A;  3ZF1 A;  4AOZ A;  1SNF A;  3GF0 A;  3SO2 A;  4DHK A;  2V9X A;  3H6X A;  3T70 A;  1SIX A;  2D4N A;  3ZF4 A;  1F7Q A;  2HR6 A;  1DUC A;  2XCE A;  2Y8C A;  4APZ 1;  4LHR A;  1F7R A;  3TPN A;  2D4M A;  3T6Y A;  2YZJ A;  2WE0 A;  1Q5U X;  3ZF6 A;  2BT1 A;  1SEH A;  3LQW A;  4WRK A;  1SMC A;  2PC5 A;  1XS1 A;  3C3I A;  2WE3 A;  4GK6 A;  1PKJ A;  4AO5 A;  3HZA A;  1RN8 A;  4OOQ A;  1F7D A;  2HRM A;  1DUD A;  1DUP A;  3ZF3 A;  3KM3 A;  5EDD A;  2OKD A;  1PKH A;  5CCO A;  1SYL A;  3C2T A;  5CCT A;  3ZF2 A;  1F7K A;  3CA9 A;  4AOO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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