3TTAA

Crystal structure of m-pmv dutpase relaxed end-product (dump) complex
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
113
structure length
113
Chain Sequence
QKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE
publication title Structural Snapshots of Enzyme-Catalysed Phosphate Ester Hydrolysis Directly Visualize in-Line Attack and Inversion
rcsb
source organism Mason-pfizer monkey virus
total genus 18
structure length 113
sequence length 113
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2011-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 3ttaA01
4GK6A 1PKKA 4A6AA 3H6XA 2OL0A 1SM8A 2BAZA 3ECYA 2WE2A 2HXDA 2Y1TA 3TSLA 3CA9A 3T64A 3TRNA 4APZ1 1XS1A 1PKHA 3ZF3A 3LQWA 3TPSA 4DHKA 1DUNA 3HHQA 3MDXA 1XS6A 1F7KA 4GV8A 3ZF1A 3ZF5A 1VYQA 1Q5HA 3GF0A 3TRLA 1F7DA 2WE0A 5F9KA 5CCOA 1DUCA 2D4MA 4OOQA 3TQZA 1PKJA 3TQ5A 2J4HA 3HZAA 3C2TA 4AOOA 1Q5UX 3ZF6A 1F7QA 3ARNA 1MQ7A 1F7NA 2PC5A 3LOJA 2Y8CA 4B0HA 1SLHA 2XY3A 1SMCA 1SJNA 1XS4A 2OKDA 4OOPA 3TQ3A 2D4NA 5EDDA 5CCTA 3ZF4A 1F7RA 2HRMA 3T60A 2XX6A 1RNJA 3MBQA 3TQ4A 1DUTA 1SEHA 3EHWA 2BSYA 2PY4A 3I93A 3TPYA 3TS6A 2WE3A 2ZDCA 3ZEZA 1EUWA 2XCEA 4WRKA 3TPWA 3TTAA 3H6DA 2QXXA 4XJCA 1DUPA 2J4QA 1EU5A 2OKEA 2YZJA 3ARAA 1F7PA 1DUDA 3T6YA 2HXBA 3F4FA 3TP1A 3SO2A 3KM3A 2OL1A 3C3IA 5ECTA 2R9QA 3P48A 2HQUA 3T70A 1SNFA 2WE1A 4GCYA 2XCDA 1RN8A 1SYLA 4LHRA 2BT1A 2OKBA 2HR6A 1SIXA 3TPNA 4AOZA 2D4LA 3ZF2A 1OGHA 1F7OA 2QLPA 2V9XA 3ZF0A 4AO5A
chains in the Genus database with same CATH superfamily
4GK6A 1PKKA 4A6AA 3H6XA 2OL0A 1SM8A 2BAZA 3ECYA 2WE2A 2HXDA 2Y1TA 3TSLA 3CA9A 3T64A 3TRNA 4APZ1 1XS1A 1PKHA 3ZF3A 3LQWA 3TPSA 4DHKA 1DUNA 3HHQA 3MDXA 1XS6A 1F7KA 4GV8A 3ZF1A 3ZF5A 1VYQA 1Q5HA 3GF0A 3TRLA 1F7DA 2WE0A 5F9KA 5CCOA 1DUCA 2D4MA 4OOQA 3TQZA 1PKJA 3TQ5A 2J4HA 3HZAA 1TULA 3C2TA 4AOOA 1Q5UX 3ZF6A 1F7QA 3ARNA 1MQ7A 1F7NA 2PC5A 3LOJA 2Y8CA 4B0HA 1SLHA 2XY3A 1SMCA 1SJNA 1XS4A 2OKDA 4OOPA 3TQ3A 2D4NA 5EDDA 5CCTA 3ZF4A 1F7RA 2HRMA 3T60A 2XX6A 1RNJA 3MBQA 3TQ4A 1DUTA 1SEHA 3EHWA 2BSYA 2PY4A 3I93A 3TPYA 3TS6A 2WE3A 2ZDCA 3ZEZA 1EUWA 2XCEA 4WRKA 3TPWA 3TTAA 3H6DA 2QXXA 4XJCA 1DUPA 2J4QA 1EU5A 2OKEA 2YZJA 3ARAA 1F7PA 1DUDA 3T6YA 2HXBA 3F4FA 3TP1A 3SO2A 3KM3A 2OL1A 3C3IA 5ECTA 2R9QA 3P48A 2HQUA 3T70A 1SNFA 2WE1A 4GCYA 2XCDA 1RN8A 1SYLA 4LHRA 2BT1A 2OKBA 2HR6A 1SIXA 3TPNA 4AOZA 2D4LA 3ZF2A 1OGHA 1F7OA 2QLPA 2V9XA 3ZF0A 4AO5A
chains in the Genus database with same CATH topology
4GK6A 1PKKA 4A6AA 3H6XA 2OL0A 1SM8A 2BAZA 3ECYA 2WE2A 2HXDA 2Y1TA 3TSLA 3CA9A 3T64A 3TRNA 4APZ1 1XS1A 1PKHA 3ZF3A 3LQWA 3TPSA 4DHKA 1DUNA 3HHQA 3MDXA 1XS6A 1F7KA 4GV8A 3ZF1A 3ZF5A 1VYQA 1Q5HA 3GF0A 3TRLA 1F7DA 2WE0A 5F9KA 5CCOA 1DUCA 2D4MA 4OOQA 3TQZA 1PKJA 3TQ5A 2J4HA 3HZAA 3C2TA 4AOOA 1Q5UX 3ZF6A 1F7QA 3ARNA 1MQ7A 1F7NA 2PC5A 3LOJA 2Y8CA 4B0HA 1SLHA 2XY3A 1SMCA 1SJNA 1XS4A 2OKDA 4OOPA 3TQ3A 2D4NA 5EDDA 5CCTA 3ZF4A 1F7RA 2HRMA 3T60A 2XX6A 1RNJA 3MBQA 3TQ4A 1DUTA 1SEHA 3EHWA 2BSYA 2PY4A 3I93A 3TPYA 3TS6A 2WE3A 2ZDCA 3ZEZA 1EUWA 2XCEA 4WRKA 3TPWA 3TTAA 3H6DA 2QXXA 4XJCA 1DUPA 2J4QA 1EU5A 2OKEA 2YZJA 3ARAA 1F7PA 1DUDA 3T6YA 2HXBA 3F4FA 3TP1A 3SO2A 3KM3A 2OL1A 3C3IA 5ECTA 2R9QA 3P48A 2HQUA 3T70A 1SNFA 2WE1A 4GCYA 2XCDA 1RN8A 1SYLA 4LHRA 2BT1A 2OKBA 2HR6A 1SIXA 3TPNA 4AOZA 2D4LA 3ZF2A 1OGHA 1F7OA 2QLPA 2V9XA 3ZF0A 4AO5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GK6 A;  1PKK A;  4A6A A;  3H6X A;  2OL0 A;  1SM8 A;  2BAZ A;  3ECY A;  2WE2 A;  2HXD A;  2Y1T A;  3TSL A;  3CA9 A;  3T64 A;  3TRN A;  4APZ 1;  1XS1 A;  1PKH A;  3ZF3 A;  3LQW A;  3TPS A;  4DHK A;  1DUN A;  3HHQ A;  3MDX A;  1XS6 A;  1F7K A;  4GV8 A;  3ZF1 A;  3ZF5 A;  1VYQ A;  1Q5H A;  3GF0 A;  3TRL A;  1F7D A;  2WE0 A;  5F9K A;  5CCO A;  1DUC A;  2D4M A;  4OOQ A;  3TQZ A;  1PKJ A;  3TQ5 A;  2J4H A;  3HZA A;  3C2T A;  4AOO A;  1Q5U X;  3ZF6 A;  1F7Q A;  3ARN A;  1MQ7 A;  1F7N A;  2PC5 A;  3LOJ A;  2Y8C A;  4B0H A;  1SLH A;  2XY3 A;  1SMC A;  1SJN A;  1XS4 A;  2OKD A;  4OOP A;  3TQ3 A;  2D4N A;  5EDD A;  5CCT A;  3ZF4 A;  1F7R A;  2HRM A;  3T60 A;  2XX6 A;  1RNJ A;  3MBQ A;  3TQ4 A;  1DUT A;  1SEH A;  3EHW A;  2BSY A;  2PY4 A;  3I93 A;  3TPY A;  3TS6 A;  2WE3 A;  2ZDC A;  3ZEZ A;  1EUW A;  2XCE A;  4WRK A;  3TPW A;  3TTA A;  3H6D A;  2QXX A;  4XJC A;  1DUP A;  2J4Q A;  1EU5 A;  2OKE A;  2YZJ A;  3ARA A;  1F7P A;  1DUD A;  3T6Y A;  2HXB A;  3F4F A;  3TP1 A;  3SO2 A;  3KM3 A;  2OL1 A;  3C3I A;  5ECT A;  2R9Q A;  3P48 A;  2HQU A;  3T70 A;  1SNF A;  2WE1 A;  4GCY A;  2XCD A;  1RN8 A;  1SYL A;  4LHR A;  2BT1 A;  2OKB A;  2HR6 A;  1SIX A;  3TPN A;  4AOZ A;  2D4L A;  3ZF2 A;  1OGH A;  1F7O A;  2QLP A;  2V9X A;  3ZF0 A;  4AO5 A; 
#chains in the Genus database with same CATH topology
 4GK6 A;  1PKK A;  4A6A A;  3H6X A;  2OL0 A;  1SM8 A;  2BAZ A;  3ECY A;  2WE2 A;  2HXD A;  2Y1T A;  3TSL A;  3CA9 A;  3T64 A;  3TRN A;  4APZ 1;  1XS1 A;  1PKH A;  3ZF3 A;  3LQW A;  3TPS A;  4DHK A;  1DUN A;  3HHQ A;  3MDX A;  1XS6 A;  1F7K A;  4GV8 A;  3ZF1 A;  3ZF5 A;  1VYQ A;  1Q5H A;  3GF0 A;  3TRL A;  1F7D A;  2WE0 A;  5F9K A;  5CCO A;  1DUC A;  2D4M A;  4OOQ A;  3TQZ A;  1PKJ A;  3TQ5 A;  2J4H A;  3HZA A;  1TUL A;  3C2T A;  4AOO A;  1Q5U X;  3ZF6 A;  1F7Q A;  3ARN A;  1MQ7 A;  1F7N A;  2PC5 A;  3LOJ A;  2Y8C A;  4B0H A;  1SLH A;  2XY3 A;  1SMC A;  1SJN A;  1XS4 A;  2OKD A;  4OOP A;  3TQ3 A;  2D4N A;  5EDD A;  5CCT A;  3ZF4 A;  1F7R A;  2HRM A;  3T60 A;  2XX6 A;  1RNJ A;  3MBQ A;  3TQ4 A;  1DUT A;  1SEH A;  3EHW A;  2BSY A;  2PY4 A;  3I93 A;  3TPY A;  3TS6 A;  2WE3 A;  2ZDC A;  3ZEZ A;  1EUW A;  2XCE A;  4WRK A;  3TPW A;  3TTA A;  3H6D A;  2QXX A;  4XJC A;  1DUP A;  2J4Q A;  1EU5 A;  2OKE A;  2YZJ A;  3ARA A;  1F7P A;  1DUD A;  3T6Y A;  2HXB A;  3F4F A;  3TP1 A;  3SO2 A;  3KM3 A;  2OL1 A;  3C3I A;  5ECT A;  2R9Q A;  3P48 A;  2HQU A;  3T70 A;  1SNF A;  2WE1 A;  4GCY A;  2XCD A;  1RN8 A;  1SYL A;  4LHR A;  2BT1 A;  2OKB A;  2HR6 A;  1SIX A;  3TPN A;  4AOZ A;  2D4L A;  3ZF2 A;  1OGH A;  1F7O A;  2QLP A;  2V9X A;  3ZF0 A;  4AO5 A; 
#chains in the Genus database with same CATH homology
 4GK6 A;  1PKK A;  4A6A A;  3H6X A;  2OL0 A;  1SM8 A;  2BAZ A;  3ECY A;  2WE2 A;  2HXD A;  2Y1T A;  3TSL A;  3CA9 A;  3T64 A;  3TRN A;  4APZ 1;  1XS1 A;  1PKH A;  3ZF3 A;  3LQW A;  3TPS A;  4DHK A;  1DUN A;  3HHQ A;  3MDX A;  1XS6 A;  1F7K A;  4GV8 A;  3ZF1 A;  3ZF5 A;  1VYQ A;  1Q5H A;  3GF0 A;  3TRL A;  1F7D A;  2WE0 A;  5F9K A;  5CCO A;  1DUC A;  2D4M A;  4OOQ A;  3TQZ A;  1PKJ A;  3TQ5 A;  2J4H A;  3HZA A;  3C2T A;  4AOO A;  1Q5U X;  3ZF6 A;  1F7Q A;  3ARN A;  1MQ7 A;  1F7N A;  2PC5 A;  3LOJ A;  2Y8C A;  4B0H A;  1SLH A;  2XY3 A;  1SMC A;  1SJN A;  1XS4 A;  2OKD A;  4OOP A;  3TQ3 A;  2D4N A;  5EDD A;  5CCT A;  3ZF4 A;  1F7R A;  2HRM A;  3T60 A;  2XX6 A;  1RNJ A;  3MBQ A;  3TQ4 A;  1DUT A;  1SEH A;  3EHW A;  2BSY A;  2PY4 A;  3I93 A;  3TPY A;  3TS6 A;  2WE3 A;  2ZDC A;  3ZEZ A;  1EUW A;  2XCE A;  4WRK A;  3TPW A;  3TTA A;  3H6D A;  2QXX A;  4XJC A;  1DUP A;  2J4Q A;  1EU5 A;  2OKE A;  2YZJ A;  3ARA A;  1F7P A;  1DUD A;  3T6Y A;  2HXB A;  3F4F A;  3TP1 A;  3SO2 A;  3KM3 A;  2OL1 A;  3C3I A;  5ECT A;  2R9Q A;  3P48 A;  2HQU A;  3T70 A;  1SNF A;  2WE1 A;  4GCY A;  2XCD A;  1RN8 A;  1SYL A;  4LHR A;  2BT1 A;  2OKB A;  2HR6 A;  1SIX A;  3TPN A;  4AOZ A;  2D4L A;  3ZF2 A;  1OGH A;  1F7O A;  2QLP A;  2V9X A;  3ZF0 A;  4AO5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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